Wall clock time and date at job start Mon Mar 30 2020 02:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37857 * 120.18465 * 2 1 4 4 C 1.38524 * 120.17588 * 180.32163 * 3 2 1 5 5 C 1.38599 * 120.54134 * 1.28884 * 4 3 2 6 6 C 1.37662 * 120.11503 * 359.34544 * 5 4 3 7 7 C 1.40019 * 120.18734 * 180.27287 * 2 1 3 8 8 C 1.46257 * 120.95321 * 358.68788 * 7 2 1 9 9 C 1.38177 * 119.36111 * 195.10263 * 8 7 2 10 10 C 1.38810 * 119.78869 * 182.29058 * 9 8 7 11 11 H 1.07994 * 119.99947 * 151.02214 * 10 9 8 12 12 C 1.40662 * 119.99753 * 331.02604 * 10 9 8 13 13 N 1.30532 * 119.99752 * 159.62899 * 12 10 9 14 14 Si 1.86799 * 120.00221 * 339.62816 * 12 10 9 15 15 H 1.48504 * 109.46900 * 91.83834 * 14 12 10 16 16 H 1.48494 * 109.47209 * 211.84279 * 14 12 10 17 17 H 1.48503 * 109.47149 * 331.84452 * 14 12 10 18 18 C 1.50496 * 120.42948 * 2.31344 * 9 8 7 19 19 C 1.50540 * 120.43683 * 178.10148 * 6 5 4 20 20 H 1.09000 * 109.47142 * 264.16560 * 1 2 3 21 21 H 1.08998 * 109.47553 * 24.17131 * 1 2 3 22 22 H 1.09007 * 109.46936 * 144.17294 * 1 2 3 23 23 H 1.08001 * 119.91163 * 0.61668 * 3 2 1 24 24 H 1.08001 * 119.73036 * 181.00550 * 4 3 2 25 25 H 1.07994 * 119.94414 * 179.37314 * 5 4 3 26 26 H 1.08007 * 120.32147 * 15.12340 * 8 7 2 27 27 H 0.97002 * 120.00251 * 179.97438 * 13 12 10 28 28 H 1.08997 * 109.24048 * 84.21964 * 18 9 8 29 29 H 1.09006 * 109.24255 * 203.61598 * 18 9 8 30 30 H 1.09002 * 109.33108 * 24.55316 * 19 6 5 31 31 H 1.09000 * 109.17719 * 265.00079 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1916 0.0000 4 6 3.5853 1.1914 -0.0067 5 6 4.2893 -0.0020 -0.0404 6 6 3.6145 -1.2018 -0.0539 7 6 2.2110 -1.2103 -0.0058 8 6 1.5054 -2.4912 0.0169 9 6 2.2029 -3.6436 0.3247 10 6 1.5529 -4.8699 0.3022 11 1 2.1050 -5.7696 0.0743 12 6 0.1750 -4.9406 0.5761 13 7 -0.5165 -5.9750 0.1816 14 14 -0.6652 -3.5542 1.5042 15 1 -1.2009 -2.5638 0.5361 16 1 -1.7797 -4.1060 2.3158 17 1 0.3172 -2.8907 2.3986 18 6 3.6627 -3.5778 0.6847 19 6 4.3706 -2.5011 -0.1333 20 1 -0.3633 -0.1045 1.0223 21 1 -0.3634 0.9375 -0.4208 22 1 -0.3633 -0.8333 -0.6016 23 1 1.6617 2.1278 0.0101 24 1 4.1212 2.1290 0.0098 25 1 5.3691 0.0093 -0.0555 26 1 0.4493 -2.5359 -0.2052 27 1 -1.4667 -6.0241 0.3708 28 1 3.7610 -3.3460 1.7452 29 1 4.1259 -4.5440 0.4844 30 1 5.3784 -2.3566 0.2560 31 1 4.4283 -2.8187 -1.1745 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261132550.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:55 Heat of formation + Delta-G solvation = 6.681587 kcal Electronic energy + Delta-G solvation = -13893.708723 eV Core-core repulsion = 11717.557128 eV Total energy + Delta-G solvation = -2176.151595 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.86627 -35.68946 -33.57883 -32.42594 -29.98916 -28.84566 -26.40465 -24.67831 -22.84371 -20.96173 -19.73528 -18.51906 -16.16180 -15.88278 -14.93527 -14.26404 -14.22352 -13.36062 -13.21463 -12.78324 -12.55780 -12.33494 -11.97546 -11.82445 -11.62105 -11.11874 -10.92735 -10.73967 -10.63065 -10.39175 -10.11926 -9.57708 -9.49406 -9.10472 -8.57218 -7.75782 -7.16479 -6.93759 -4.50379 2.05090 2.27550 3.08151 3.16662 3.27410 3.58305 3.97626 4.62709 5.09779 5.56006 5.59952 5.74281 5.86928 5.97664 6.05310 6.12278 6.26583 6.30353 6.37987 6.48824 6.59135 6.63075 6.67384 6.82816 6.97695 7.09157 7.20386 7.29196 7.45690 7.47654 7.82514 7.92729 8.05961 8.26750 8.61134 8.76470 9.81070 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.033121 B = 0.012495 C = 0.009532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.187863 B = 2240.367323 C = 2936.620415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.149 4.149 3 C -0.104 4.104 4 C -0.195 4.195 5 C -0.103 4.103 6 C -0.140 4.140 7 C 0.058 3.942 8 C -0.401 4.401 9 C 0.075 3.925 10 C -0.416 4.416 11 H 0.091 0.909 12 C 0.083 3.917 13 N -0.786 5.786 14 Si 0.932 3.068 15 H -0.262 1.262 16 H -0.301 1.301 17 H -0.246 1.246 18 C -0.083 4.083 19 C -0.062 4.062 20 H 0.053 0.947 21 H 0.049 0.951 22 H 0.064 0.936 23 H 0.101 0.899 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.290 0.710 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.049 6.576 1.141 7.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.149 4.149 3 C -0.122 4.122 4 C -0.213 4.213 5 C -0.121 4.121 6 C -0.140 4.140 7 C 0.058 3.942 8 C -0.422 4.422 9 C 0.072 3.928 10 C -0.442 4.442 11 H 0.109 0.891 12 C -0.140 4.140 13 N -0.407 5.407 14 Si 0.759 3.241 15 H -0.188 1.188 16 H -0.230 1.230 17 H -0.169 1.169 18 C -0.120 4.120 19 C -0.099 4.099 20 H 0.072 0.928 21 H 0.068 0.932 22 H 0.083 0.917 23 H 0.119 0.881 24 H 0.119 0.881 25 H 0.120 0.880 26 H 0.119 0.881 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.855 6.333 1.099 7.034 hybrid contribution -0.511 0.502 0.326 0.787 sum 2.344 6.835 1.425 7.365 Atomic orbital electron populations 1.20629 0.92680 1.01117 1.01117 1.19760 0.95001 0.92672 1.07457 1.20659 0.94028 0.96387 1.01118 1.20636 0.93965 0.96756 1.09965 1.20625 0.98120 0.92312 1.01091 1.19826 0.93533 0.94062 1.06615 1.18643 0.91481 0.92958 0.91116 1.21030 0.98753 0.90607 1.31797 1.19224 0.92173 0.92923 0.88511 1.19428 0.92892 0.95245 1.36633 0.89091 1.26586 0.97359 0.96657 0.93437 1.69580 1.09655 1.29161 1.32300 0.85973 0.78164 0.79747 0.80257 1.18767 1.22959 1.16886 1.20506 0.94719 0.97642 0.99128 1.20164 0.96846 0.92746 1.00141 0.92800 0.93231 0.91725 0.88057 0.88147 0.87965 0.88123 0.89882 0.91748 0.91880 0.92567 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.91 9.46 36.00 0.34 -1.57 16 2 C -0.15 -3.18 5.93 -104.10 -0.62 -3.80 16 3 C -0.10 -1.98 9.67 -39.62 -0.38 -2.37 16 4 C -0.19 -3.58 10.04 -39.34 -0.40 -3.97 16 5 C -0.10 -1.96 9.68 -39.66 -0.38 -2.35 16 6 C -0.14 -2.98 5.68 -104.08 -0.59 -3.57 16 7 C 0.06 1.36 5.80 -105.18 -0.61 0.75 16 8 C -0.40 -9.94 6.74 -36.38 -0.25 -10.19 16 9 C 0.08 1.83 5.05 -104.53 -0.53 1.30 16 10 C -0.42 -10.74 9.43 -38.46 -0.36 -11.10 16 11 H 0.09 2.39 8.06 -52.49 -0.42 1.97 16 12 C 0.08 2.11 5.36 -17.19 -0.09 2.02 16 13 N -0.79 -20.14 13.91 55.59 0.77 -19.37 16 14 Si 0.93 21.27 24.62 -169.99 -4.18 17.08 16 15 H -0.26 -5.87 5.92 56.52 0.33 -5.54 16 16 H -0.30 -6.59 7.11 56.52 0.40 -6.18 16 17 H -0.25 -5.81 7.08 56.52 0.40 -5.41 16 18 C -0.08 -1.72 5.87 -28.17 -0.17 -1.89 16 19 C -0.06 -1.19 5.91 -28.15 -0.17 -1.36 16 20 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 21 H 0.05 0.81 8.05 -51.93 -0.42 0.39 16 22 H 0.06 1.33 6.07 -51.92 -0.32 1.01 16 23 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 24 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 25 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 26 H 0.10 2.56 2.96 -52.48 -0.16 2.41 16 27 H 0.29 6.73 8.29 -40.82 -0.34 6.39 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.06 1.21 8.03 -51.93 -0.42 0.79 16 30 H 0.06 0.92 8.05 -51.93 -0.42 0.50 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 251.35 15.07 3.79 3.79 Total: -1.00 -26.68 251.35 -7.71 -34.39 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -3.89 Total: 2.20 kcal Atomic # 6 Polarization: -33.89 SS G_CDS: -4.20 Total: -38.09 kcal Atomic # 7 Polarization: -20.14 SS G_CDS: 0.77 Total: -19.37 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.18 Total: 17.08 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -26.68 -7.71 -34.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261132550.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.073 kcal (2) G-P(sol) polarization free energy of solvation -26.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds