Wall clock time and date at job start Mon Mar 30 2020 02:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37857 * 120.18465 * 2 1 4 4 C 1.38524 * 120.17588 * 180.32163 * 3 2 1 5 5 C 1.38599 * 120.54134 * 1.28884 * 4 3 2 6 6 C 1.37662 * 120.11503 * 359.34544 * 5 4 3 7 7 C 1.40019 * 120.18734 * 180.27287 * 2 1 3 8 8 C 1.46257 * 120.95321 * 358.68788 * 7 2 1 9 9 C 1.38177 * 119.36111 * 195.10263 * 8 7 2 10 10 C 1.38810 * 119.78869 * 182.29058 * 9 8 7 11 11 H 1.07994 * 119.99947 * 151.02214 * 10 9 8 12 12 C 1.40662 * 119.99753 * 331.02604 * 10 9 8 13 13 N 1.30532 * 119.99752 * 159.62899 * 12 10 9 14 14 Si 1.86799 * 120.00221 * 339.62816 * 12 10 9 15 15 H 1.48504 * 109.46900 * 91.83834 * 14 12 10 16 16 H 1.48494 * 109.47209 * 211.84279 * 14 12 10 17 17 H 1.48503 * 109.47149 * 331.84452 * 14 12 10 18 18 C 1.50496 * 120.42948 * 2.31344 * 9 8 7 19 19 C 1.50540 * 120.43683 * 178.10148 * 6 5 4 20 20 H 1.09000 * 109.47142 * 264.16560 * 1 2 3 21 21 H 1.08998 * 109.47553 * 24.17131 * 1 2 3 22 22 H 1.09007 * 109.46936 * 144.17294 * 1 2 3 23 23 H 1.08001 * 119.91163 * 0.61668 * 3 2 1 24 24 H 1.08001 * 119.73036 * 181.00550 * 4 3 2 25 25 H 1.07994 * 119.94414 * 179.37314 * 5 4 3 26 26 H 1.08007 * 120.32147 * 15.12340 * 8 7 2 27 27 H 0.97002 * 120.00251 * 179.97438 * 13 12 10 28 28 H 1.08997 * 109.24048 * 84.21964 * 18 9 8 29 29 H 1.09006 * 109.24255 * 203.61598 * 18 9 8 30 30 H 1.09002 * 109.33108 * 24.55316 * 19 6 5 31 31 H 1.09000 * 109.17719 * 265.00079 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1916 0.0000 4 6 3.5853 1.1914 -0.0067 5 6 4.2893 -0.0020 -0.0404 6 6 3.6145 -1.2018 -0.0539 7 6 2.2110 -1.2103 -0.0058 8 6 1.5054 -2.4912 0.0169 9 6 2.2029 -3.6436 0.3247 10 6 1.5529 -4.8699 0.3022 11 1 2.1050 -5.7696 0.0743 12 6 0.1750 -4.9406 0.5761 13 7 -0.5165 -5.9750 0.1816 14 14 -0.6652 -3.5542 1.5042 15 1 -1.2009 -2.5638 0.5361 16 1 -1.7797 -4.1060 2.3158 17 1 0.3172 -2.8907 2.3986 18 6 3.6627 -3.5778 0.6847 19 6 4.3706 -2.5011 -0.1333 20 1 -0.3633 -0.1045 1.0223 21 1 -0.3634 0.9375 -0.4208 22 1 -0.3633 -0.8333 -0.6016 23 1 1.6617 2.1278 0.0101 24 1 4.1212 2.1290 0.0098 25 1 5.3691 0.0093 -0.0555 26 1 0.4493 -2.5359 -0.2052 27 1 -1.4667 -6.0241 0.3708 28 1 3.7610 -3.3460 1.7452 29 1 4.1259 -4.5440 0.4844 30 1 5.3784 -2.3566 0.2560 31 1 4.4283 -2.8187 -1.1745 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261132550.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:55 Heat of formation + Delta-G solvation = -6.588756 kcal Electronic energy + Delta-G solvation = -13894.284168 eV Core-core repulsion = 11717.557128 eV Total energy + Delta-G solvation = -2176.727040 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.47010 -37.39403 -35.32846 -34.05454 -31.67094 -30.47626 -28.00645 -26.40910 -24.47691 -22.64419 -21.30659 -20.28061 -17.91007 -17.62243 -16.54736 -15.91973 -15.86866 -15.02698 -14.91577 -14.37711 -14.18402 -13.92185 -13.68452 -13.48052 -13.16540 -12.76051 -12.56169 -12.45348 -12.36441 -11.99745 -11.80401 -11.39901 -11.12934 -10.85669 -10.30298 -9.28088 -9.05215 -8.70171 -6.42377 0.38898 0.72491 1.24983 1.29910 1.42714 1.79790 2.12816 2.86209 3.34589 4.02793 4.09620 4.27438 4.37630 4.47068 4.54263 4.59031 4.72913 4.78240 4.81203 4.94792 5.00690 5.03627 5.09813 5.19975 5.27661 5.46686 5.58904 5.66774 5.77530 5.85324 6.01071 6.17250 6.39948 6.47558 6.76220 6.90969 7.98648 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.033121 B = 0.012495 C = 0.009532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.187863 B = 2240.367323 C = 2936.620415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.160 4.160 3 C -0.111 4.111 4 C -0.175 4.175 5 C -0.109 4.109 6 C -0.148 4.148 7 C 0.012 3.988 8 C -0.403 4.403 9 C 0.061 3.939 10 C -0.457 4.457 11 H 0.069 0.931 12 C 0.054 3.946 13 N -0.823 5.823 14 Si 0.974 3.026 15 H -0.261 1.261 16 H -0.285 1.285 17 H -0.261 1.261 18 C -0.083 4.083 19 C -0.060 4.060 20 H 0.054 0.946 21 H 0.081 0.919 22 H 0.043 0.957 23 H 0.134 0.866 24 H 0.139 0.861 25 H 0.137 0.863 26 H 0.085 0.915 27 H 0.298 0.702 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.619 9.953 1.378 11.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.160 4.160 3 C -0.129 4.129 4 C -0.193 4.193 5 C -0.127 4.127 6 C -0.148 4.148 7 C 0.012 3.988 8 C -0.424 4.424 9 C 0.058 3.942 10 C -0.484 4.484 11 H 0.088 0.912 12 C -0.165 4.165 13 N -0.447 5.447 14 Si 0.799 3.201 15 H -0.187 1.187 16 H -0.213 1.213 17 H -0.185 1.185 18 C -0.120 4.120 19 C -0.096 4.096 20 H 0.072 0.928 21 H 0.100 0.900 22 H 0.062 0.938 23 H 0.151 0.849 24 H 0.157 0.843 25 H 0.155 0.845 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.423 9.709 1.334 10.752 hybrid contribution -0.840 -0.211 0.201 0.889 sum 3.583 9.497 1.535 10.266 Atomic orbital electron populations 1.20656 0.91981 1.01987 1.01015 1.20129 0.95999 0.93094 1.06763 1.21061 0.94828 0.96708 1.00299 1.21210 0.93899 0.98213 1.06018 1.21043 1.00034 0.91521 1.00057 1.20182 0.92971 0.95881 1.05774 1.18899 0.92949 0.92914 0.94057 1.21183 0.98323 0.91972 1.30888 1.19501 0.94231 0.92193 0.88283 1.19437 0.93523 0.95230 1.40209 0.91247 1.27070 0.97655 0.97983 0.93771 1.69590 1.10325 1.30509 1.34257 0.85347 0.77489 0.78014 0.79215 1.18673 1.21312 1.18505 1.20515 0.92779 0.99053 0.99627 1.20205 0.98153 0.91359 0.99924 0.92772 0.89981 0.93845 0.84855 0.84271 0.84519 0.89715 0.89107 0.91346 0.90917 0.88945 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.71 9.46 71.24 0.67 -3.03 16 2 C -0.16 -6.46 5.93 -19.52 -0.12 -6.57 16 3 C -0.11 -3.73 9.67 22.25 0.22 -3.52 16 4 C -0.18 -5.43 10.04 22.42 0.23 -5.20 16 5 C -0.11 -3.59 9.68 22.22 0.22 -3.38 16 6 C -0.15 -5.88 5.68 -19.52 -0.11 -5.99 16 7 C 0.01 0.54 5.80 -20.23 -0.12 0.43 16 8 C -0.40 -20.29 6.74 24.34 0.16 -20.13 16 9 C 0.06 3.05 5.05 -19.81 -0.10 2.95 16 10 C -0.46 -24.88 9.43 23.00 0.22 -24.66 16 11 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 12 C 0.05 2.90 5.36 85.48 0.46 3.36 16 13 N -0.82 -44.22 13.91 21.96 0.31 -43.92 16 14 Si 0.97 45.14 24.62 68.60 1.69 46.83 16 15 H -0.26 -11.87 5.92 99.48 0.59 -11.28 16 16 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 17 H -0.26 -12.56 7.08 99.48 0.70 -11.85 16 18 C -0.08 -3.41 5.87 29.66 0.17 -3.24 16 19 C -0.06 -2.16 5.91 29.68 0.18 -1.98 16 20 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 21 H 0.08 2.44 8.05 -2.39 -0.02 2.42 16 22 H 0.04 1.77 6.07 -2.38 -0.01 1.76 16 23 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 24 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 25 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 26 H 0.09 4.46 2.96 -2.91 -0.01 4.45 16 27 H 0.30 14.40 8.29 -92.71 -0.77 13.63 16 28 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.07 2.79 8.03 -2.38 -0.02 2.78 16 30 H 0.09 2.67 8.05 -2.39 -0.02 2.65 16 31 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -58.98 251.35 5.07 -53.91 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 1.00 Total: 14.15 kcal Atomic # 6 Polarization: -73.05 SS G_CDS: 2.07 Total: -70.97 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.31 Total: -43.92 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.69 Total: 46.83 kcal Total: -58.98 5.07 -53.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261132550.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.320 kcal (2) G-P(sol) polarization free energy of solvation -58.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds