Wall clock time and date at job start Mon Mar 30 2020 02:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47513 * 2 1 4 4 C 1.53008 * 109.46946 * 119.99917 * 2 1 3 5 5 C 1.50701 * 109.38673 * 300.00033 * 4 2 1 6 6 H 1.08003 * 120.00115 * 337.05489 * 5 4 2 7 7 C 1.37873 * 119.99809 * 157.06067 * 5 4 2 8 8 N 1.31523 * 119.99929 * 299.71366 * 7 5 4 9 9 Si 1.86796 * 120.00472 * 119.71803 * 7 5 4 10 10 H 1.48502 * 109.47187 * 59.99572 * 9 7 5 11 11 H 1.48506 * 109.47130 * 300.00119 * 9 7 5 12 12 H 1.48498 * 109.47444 * 179.97438 * 9 7 5 13 13 C 1.52580 * 109.30972 * 180.24360 * 4 2 1 14 14 C 1.52581 * 110.72392 * 169.22379 * 13 4 2 15 15 C 1.53100 * 109.95667 * 70.67763 * 14 13 4 16 16 S 1.81743 * 108.83944 * 296.97605 * 15 14 13 17 17 C 1.53101 * 109.38718 * 59.79927 * 4 2 1 18 18 H 1.09005 * 109.46921 * 300.00787 * 1 2 3 19 19 H 1.09004 * 109.46820 * 59.99654 * 1 2 3 20 20 H 1.08994 * 109.47135 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47176 * 239.99227 * 2 1 3 22 22 H 1.09005 * 109.47670 * 59.99671 * 3 2 1 23 23 H 1.09004 * 109.47398 * 179.97438 * 3 2 1 24 24 H 1.09004 * 109.47360 * 300.00016 * 3 2 1 25 25 H 0.96997 * 119.99695 * 19.78749 * 8 7 5 26 26 H 1.08994 * 109.22698 * 289.54846 * 13 4 2 27 27 H 1.09005 * 109.22677 * 48.90986 * 13 4 2 28 28 H 1.09002 * 109.39594 * 310.52938 * 14 13 4 29 29 H 1.09005 * 109.31339 * 190.77449 * 14 13 4 30 30 H 1.08994 * 109.57555 * 177.16825 * 15 14 13 31 31 H 1.09000 * 109.57377 * 56.77719 * 15 14 13 32 32 H 1.09001 * 109.57727 * 302.88097 * 17 4 2 33 33 H 1.08998 * 109.57767 * 63.26899 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5366 -0.0094 2.4785 6 1 1.2483 1.0299 2.4206 7 6 1.4441 -0.6847 3.6769 8 7 0.6705 -1.7436 3.7770 9 14 2.4174 -0.0958 5.1585 10 1 2.0126 1.2923 5.4968 11 1 3.8679 -0.1249 4.8413 12 1 2.1452 -0.9862 6.3154 13 6 3.5658 -0.7138 1.2487 14 6 4.1085 -1.1830 2.5953 15 6 3.8555 -2.6832 2.7668 16 16 2.0621 -2.9777 2.7830 17 6 1.5244 -2.1629 1.2499 18 1 -0.3633 0.5140 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 1.8933 -0.5139 -0.8899 22 1 1.6768 1.9564 0.8900 23 1 3.1301 1.4424 0.0005 24 1 1.6768 1.9563 -0.8900 25 1 0.3956 -2.2206 2.9784 26 1 3.9276 -1.3787 0.4645 27 1 3.9197 0.2982 1.0520 28 1 3.6094 -0.6379 3.3966 29 1 5.1804 -0.9895 2.6392 30 1 4.2897 -3.0216 3.7075 31 1 4.3074 -3.2269 1.9372 32 1 0.4356 -2.1614 1.1996 33 1 1.9309 -2.6965 0.3908 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261133108.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:18 Heat of formation + Delta-G solvation = 36.872569 kcal Electronic energy + Delta-G solvation = -14046.670798 eV Core-core repulsion = 12007.272333 eV Total energy + Delta-G solvation = -2039.398464 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.78916 -35.02208 -34.57430 -30.60558 -28.84357 -26.99355 -26.59512 -23.76557 -21.71394 -20.69745 -18.41607 -17.33976 -16.41275 -15.92063 -15.29034 -14.76353 -14.43843 -14.23484 -14.01396 -13.84966 -13.35513 -13.03418 -12.70919 -12.58942 -12.36359 -12.24051 -12.04209 -11.87350 -11.68236 -11.38411 -11.18254 -10.65034 -10.48877 -10.30681 -9.84630 -8.41033 -6.75348 -5.42472 1.26781 1.62153 1.66960 1.85428 2.06113 2.74438 3.32087 4.16936 4.21104 4.29626 4.37873 4.43244 4.49758 4.69077 4.74041 4.80648 4.89454 4.95998 5.02947 5.09178 5.16455 5.21324 5.33906 5.48606 5.56434 5.63822 5.71253 5.78326 5.98157 6.35071 6.74518 7.20689 7.87465 8.69053 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.029253 B = 0.018280 C = 0.016580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.922189 B = 1531.359851 C = 1688.391493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.073 4.073 3 C -0.129 4.129 4 C 0.069 3.931 5 C -0.657 4.657 6 H 0.043 0.957 7 C 0.016 3.984 8 N -0.744 5.744 9 Si 1.043 2.957 10 H -0.293 1.293 11 H -0.255 1.255 12 H -0.302 1.302 13 C -0.104 4.104 14 C -0.131 4.131 15 C -0.133 4.133 16 S -0.236 6.236 17 C -0.075 4.075 18 H 0.041 0.959 19 H 0.052 0.948 20 H 0.036 0.964 21 H 0.047 0.953 22 H 0.044 0.956 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.268 0.732 26 H 0.028 0.972 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.954 0.980 -4.879 6.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.093 4.093 3 C -0.186 4.186 4 C 0.067 3.933 5 C -0.692 4.692 6 H 0.061 0.939 7 C -0.200 4.200 8 N -0.388 5.388 9 Si 0.873 3.127 10 H -0.221 1.221 11 H -0.182 1.182 12 H -0.230 1.230 13 C -0.142 4.142 14 C -0.168 4.168 15 C -0.278 4.278 16 S -0.005 6.005 17 C -0.223 4.223 18 H 0.061 0.939 19 H 0.071 0.929 20 H 0.055 0.945 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.046 0.954 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.432 0.099 -2.571 4.290 hybrid contribution 0.516 0.365 -2.236 2.323 sum 3.948 0.464 -4.806 6.238 Atomic orbital electron populations 1.21637 0.96063 1.00123 1.00265 1.20971 0.95401 0.96356 0.96606 1.21736 1.00343 0.96021 1.00520 1.18199 0.91203 0.89472 0.94471 1.20997 1.56414 0.98464 0.93310 0.93870 1.25369 0.93732 0.97751 1.03181 1.70540 1.13799 1.20531 1.33974 0.84201 0.78867 0.75521 0.74069 1.22065 1.18191 1.22975 1.21586 0.98343 0.99438 0.94806 1.22016 0.99176 0.94579 1.01070 1.23628 1.01625 0.99925 1.02659 1.88838 1.03617 1.77981 1.30051 1.23567 1.01846 1.02024 0.94867 0.93938 0.92895 0.94476 0.93506 0.93650 0.93000 0.92907 0.90739 0.95379 0.92192 0.89303 0.93028 0.90204 0.92311 0.90529 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.66 8.59 71.98 0.62 -4.04 16 2 C -0.07 -2.80 2.27 -10.79 -0.02 -2.82 16 3 C -0.13 -4.56 8.61 71.98 0.62 -3.94 16 4 C 0.07 3.03 0.31 -53.03 -0.02 3.02 16 5 C -0.66 -32.94 5.75 25.60 0.15 -32.79 16 6 H 0.04 2.32 6.21 -2.91 -0.02 2.30 16 7 C 0.02 0.82 2.77 84.65 0.23 1.05 16 8 N -0.74 -40.33 10.81 21.45 0.23 -40.10 16 9 Si 1.04 48.17 27.69 68.60 1.90 50.07 16 10 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.25 -10.88 5.90 99.48 0.59 -10.30 16 12 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 13 C -0.10 -4.26 4.45 30.32 0.13 -4.13 16 14 C -0.13 -5.50 5.44 30.49 0.17 -5.33 16 15 C -0.13 -5.53 6.46 72.02 0.46 -5.07 16 16 S -0.24 -11.11 15.28 -56.49 -0.86 -11.97 16 17 C -0.07 -3.32 4.38 72.02 0.32 -3.01 16 18 H 0.04 1.81 7.12 -2.38 -0.02 1.79 16 19 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 20 H 0.04 1.40 6.35 -2.39 -0.02 1.38 16 21 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.04 1.78 6.30 -2.38 -0.02 1.76 16 23 H 0.05 1.75 6.18 -2.39 -0.01 1.73 16 24 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 25 H 0.27 14.34 4.10 -113.54 -0.47 13.87 16 26 H 0.03 1.08 8.08 -2.39 -0.02 1.06 16 27 H 0.06 2.36 5.85 -2.38 -0.01 2.35 16 28 H 0.09 4.07 1.04 -2.39 0.00 4.07 16 29 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 31 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.08 3.56 5.36 -2.39 -0.01 3.55 16 33 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -52.68 236.53 5.20 -47.49 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.27 Total: 11.58 kcal Atomic # 6 Polarization: -59.72 SS G_CDS: 2.66 Total: -57.06 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.23 Total: -40.10 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 1.90 Total: 50.07 kcal Atomic # 16 Polarization: -11.11 SS G_CDS: -0.86 Total: -11.97 kcal Total: -52.68 5.20 -47.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261133108.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.359 kcal (2) G-P(sol) polarization free energy of solvation -52.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds