Wall clock time and date at job start Mon Mar 30 2020 02:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47300 * 2 1 4 4 C 1.53004 * 109.46833 * 120.00267 * 2 1 3 5 5 C 1.50691 * 109.31133 * 59.74990 * 4 2 1 6 6 H 1.08007 * 119.99956 * 238.20633 * 5 4 2 7 7 C 1.37879 * 120.00032 * 58.20824 * 5 4 2 8 8 N 1.31511 * 120.00232 * 6.42559 * 7 5 4 9 9 Si 1.86804 * 119.99960 * 186.42162 * 7 5 4 10 10 H 1.48507 * 109.46846 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46736 * 120.00060 * 9 7 5 12 12 H 1.48495 * 109.47444 * 240.00313 * 9 7 5 13 13 C 1.52569 * 109.48793 * 179.42872 * 4 2 1 14 14 C 1.52581 * 110.83828 * 190.69868 * 13 4 2 15 15 C 1.53099 * 109.95604 * 289.36915 * 14 13 4 16 16 S 1.81749 * 108.84061 * 63.03017 * 15 14 13 17 17 C 1.53094 * 109.38847 * 299.99246 * 4 2 1 18 18 H 1.09000 * 109.46516 * 299.99925 * 1 2 3 19 19 H 1.08996 * 109.47087 * 59.99408 * 1 2 3 20 20 H 1.09000 * 109.47414 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46405 * 239.99593 * 2 1 3 22 22 H 1.08995 * 109.47236 * 59.99818 * 3 2 1 23 23 H 1.09002 * 109.47282 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.47405 * 299.99998 * 3 2 1 25 25 H 0.96995 * 120.00348 * 179.97438 * 8 7 5 26 26 H 1.08999 * 109.13384 * 70.36980 * 13 4 2 27 27 H 1.08997 * 109.17472 * 311.05773 * 13 4 2 28 28 H 1.09005 * 109.38948 * 169.22439 * 14 13 4 29 29 H 1.08997 * 109.39417 * 49.52176 * 14 13 4 30 30 H 1.08993 * 109.57840 * 303.21657 * 15 14 13 31 31 H 1.09007 * 109.57512 * 182.83375 * 15 14 13 32 32 H 1.08997 * 109.57780 * 57.02457 * 17 4 2 33 33 H 1.08995 * 109.57976 * 296.76865 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5306 -2.1395 1.2486 6 1 0.9330 -2.4991 2.0733 7 6 1.8275 -2.9782 0.1953 8 7 2.6573 -2.5838 -0.7456 9 14 1.0511 -4.6749 0.1048 10 1 0.1608 -4.8749 1.2764 11 1 0.2572 -4.7898 -1.1449 12 1 2.1174 -5.7083 0.1107 13 6 3.5656 -0.7340 1.2426 14 6 4.1054 -1.6649 2.3243 15 6 3.8563 -1.0581 3.7077 16 16 2.0638 -0.9164 3.9724 17 6 1.5287 0.0019 2.4980 18 1 -0.3632 0.5138 0.8900 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 1.8933 -0.5139 -0.8900 22 1 1.6767 1.9563 0.8899 23 1 3.1301 1.4424 -0.0005 24 1 1.6768 1.9563 -0.8900 25 1 2.8664 -3.1740 -1.4865 26 1 3.9321 0.2765 1.4230 27 1 3.9165 -1.0744 0.2684 28 1 5.1764 -1.8062 2.1787 29 1 3.6021 -2.6292 2.2562 30 1 4.3126 -0.0697 3.7605 31 1 4.2886 -1.7032 4.4727 32 1 0.4401 0.0494 2.4726 33 1 1.9377 1.0118 2.5283 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261133109.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:21 Heat of formation + Delta-G solvation = -32.853197 kcal Electronic energy + Delta-G solvation = -13734.194315 eV Core-core repulsion = 11691.772314 eV Total energy + Delta-G solvation = -2042.422000 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.56799 -34.78715 -33.88218 -30.73952 -28.34794 -27.64806 -26.43649 -23.92388 -21.56108 -19.86603 -17.89180 -17.12677 -16.58881 -15.53360 -15.25180 -14.94228 -14.74460 -14.38993 -13.83454 -13.64002 -13.39127 -13.02575 -12.83492 -12.63525 -12.41638 -12.30036 -11.85839 -11.77099 -11.57680 -11.54097 -11.11495 -10.71023 -10.60091 -10.12310 -10.00440 -8.25280 -7.86451 -5.91574 1.24217 1.40654 1.47789 1.55553 1.95516 2.54029 3.37252 4.20197 4.26830 4.40171 4.41819 4.55500 4.62875 4.70177 4.78102 4.88935 4.93690 5.00583 5.05861 5.19391 5.21606 5.29978 5.38580 5.66829 5.77390 5.80122 5.87434 5.97866 6.15633 6.33560 6.62106 7.08817 7.68301 9.11705 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.024744 B = 0.016930 C = 0.013290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.323017 B = 1653.427745 C = 2106.313542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.085 4.085 3 C -0.140 4.140 4 C 0.074 3.926 5 C -0.476 4.476 6 H 0.048 0.952 7 C 0.033 3.967 8 N -0.902 5.902 9 Si 0.918 3.082 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.291 1.291 13 C -0.100 4.100 14 C -0.105 4.105 15 C -0.058 4.058 16 S -0.318 6.318 17 C -0.048 4.048 18 H 0.047 0.953 19 H 0.040 0.960 20 H 0.037 0.963 21 H 0.067 0.933 22 H 0.053 0.947 23 H 0.043 0.957 24 H 0.048 0.952 25 H 0.252 0.748 26 H 0.028 0.972 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.967 5.428 3.597 6.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.105 4.105 3 C -0.197 4.197 4 C 0.073 3.927 5 C -0.515 4.515 6 H 0.066 0.934 7 C -0.165 4.165 8 N -0.543 5.543 9 Si 0.748 3.252 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.218 1.218 13 C -0.138 4.138 14 C -0.143 4.143 15 C -0.206 4.206 16 S -0.091 6.091 17 C -0.196 4.196 18 H 0.066 0.934 19 H 0.059 0.941 20 H 0.056 0.944 21 H 0.086 0.914 22 H 0.072 0.928 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.046 0.954 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.121 0.879 32 H 0.104 0.896 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.425 4.977 4.337 6.615 hybrid contribution 0.288 -0.862 -1.330 1.611 sum 0.714 4.115 3.007 5.147 Atomic orbital electron populations 1.21651 0.96647 1.00296 0.99505 1.21044 0.94658 0.94091 1.00734 1.21893 1.00244 0.96842 1.00710 1.18234 0.91945 0.93255 0.89277 1.21215 1.30464 0.96150 1.03670 0.93384 1.25199 0.95714 0.99401 0.96227 1.69932 1.35196 1.36555 1.12575 0.86116 0.78607 0.83215 0.77307 1.20190 1.21550 1.21758 1.21388 0.97628 0.95368 0.99405 1.21493 0.99273 1.00632 0.92924 1.23313 0.92384 1.03998 1.00926 1.86155 1.11450 1.78929 1.32607 1.23640 1.02841 0.98551 0.94594 0.93364 0.94057 0.94416 0.91445 0.92807 0.93755 0.93340 0.93838 0.95357 0.91516 0.92734 0.92171 0.89834 0.87924 0.89593 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.84 8.59 71.98 0.62 -4.22 16 2 C -0.08 -3.53 2.00 -10.79 -0.02 -3.56 16 3 C -0.14 -4.85 8.51 71.98 0.61 -4.23 16 4 C 0.07 3.22 0.06 -53.04 0.00 3.21 16 5 C -0.48 -23.58 4.32 25.60 0.11 -23.47 16 6 H 0.05 2.53 7.15 -2.91 -0.02 2.51 16 7 C 0.03 1.68 4.95 84.66 0.42 2.10 16 8 N -0.90 -47.30 9.50 21.45 0.20 -47.09 16 9 Si 0.92 42.78 29.54 68.60 2.03 44.80 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 12 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 13 C -0.10 -4.27 3.52 30.31 0.11 -4.16 16 14 C -0.10 -4.20 5.60 30.49 0.17 -4.03 16 15 C -0.06 -2.01 6.45 72.02 0.46 -1.55 16 16 S -0.32 -12.41 21.07 -56.49 -1.19 -13.60 16 17 C -0.05 -1.89 4.50 72.01 0.32 -1.57 16 18 H 0.05 1.71 6.36 -2.39 -0.02 1.70 16 19 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 20 H 0.04 1.64 7.20 -2.39 -0.02 1.62 16 21 H 0.07 3.30 6.18 -2.38 -0.01 3.29 16 22 H 0.05 1.70 6.50 -2.39 -0.02 1.68 16 23 H 0.04 1.54 6.69 -2.39 -0.02 1.53 16 24 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.25 13.03 8.31 -92.71 -0.77 12.26 16 26 H 0.03 1.10 6.94 -2.39 -0.02 1.09 16 27 H 0.07 3.25 6.26 -2.39 -0.01 3.24 16 28 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 29 H 0.06 2.81 6.49 -2.39 -0.02 2.80 16 30 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.10 3.15 8.14 -2.38 -0.02 3.13 16 32 H 0.09 3.38 6.27 -2.39 -0.01 3.36 16 33 H 0.07 2.59 6.61 -2.39 -0.02 2.58 16 Total: -1.00 -51.96 251.59 4.92 -47.05 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 1.08 Total: 10.31 kcal Atomic # 6 Polarization: -44.27 SS G_CDS: 2.80 Total: -41.47 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.20 Total: -47.09 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: -12.41 SS G_CDS: -1.19 Total: -13.60 kcal Total: -51.96 4.92 -47.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261133109.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.192 kcal (2) G-P(sol) polarization free energy of solvation -51.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds