Wall clock time and date at job start Mon Mar 30 2020 02:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47514 * 2 1 4 4 C 1.53003 * 109.46766 * 239.99946 * 2 1 3 5 5 C 1.53003 * 109.47051 * 120.00607 * 2 1 3 6 6 C 1.50697 * 108.84875 * 177.12012 * 5 2 1 7 7 H 1.08001 * 120.00569 * 25.83920 * 6 5 2 8 8 C 1.37879 * 119.99703 * 205.84040 * 6 5 2 9 9 N 1.31511 * 120.00469 * 342.43811 * 8 6 5 10 10 Si 1.86804 * 119.99935 * 162.43591 * 8 6 5 11 11 H 1.48501 * 109.46984 * 59.99982 * 10 8 6 12 12 H 1.48503 * 109.47178 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47166 * 300.00142 * 10 8 6 14 14 C 1.52942 * 108.88308 * 295.55944 * 5 2 1 15 15 C 1.55154 * 108.96026 * 150.89607 * 14 5 2 16 16 S 1.83994 * 100.91023 * 318.56309 * 15 14 5 17 17 C 1.53706 * 108.88810 * 58.54138 * 5 2 1 18 18 H 1.09008 * 109.46553 * 299.99907 * 1 2 3 19 19 H 1.09005 * 109.47225 * 59.99284 * 1 2 3 20 20 H 1.08995 * 109.47354 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47113 * 179.97438 * 3 2 1 22 22 H 1.08998 * 109.47530 * 300.00180 * 3 2 1 23 23 H 1.08999 * 109.47117 * 60.00294 * 3 2 1 24 24 H 1.08995 * 109.47455 * 300.00270 * 4 2 1 25 25 H 1.08998 * 109.46904 * 60.00660 * 4 2 1 26 26 H 1.09003 * 109.47185 * 180.02562 * 4 2 1 27 27 H 0.96991 * 120.00411 * 179.97438 * 9 8 6 28 28 H 1.09003 * 109.60606 * 270.82487 * 14 5 2 29 29 H 1.09000 * 109.60652 * 31.14705 * 14 5 2 30 30 H 1.09006 * 111.13168 * 76.46787 * 15 14 5 31 31 H 1.08996 * 111.13759 * 200.64930 * 15 14 5 32 32 H 1.08996 * 110.34383 * 355.25263 * 17 5 2 33 33 H 1.09000 * 110.33952 * 117.51439 * 17 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2492 6 6 3.5452 -0.7756 1.1997 7 1 4.0945 -0.0300 0.6440 8 6 4.2211 -1.7771 1.8639 9 7 3.6149 -2.4677 2.8047 10 14 5.9981 -2.1531 1.4274 11 1 6.8305 -0.9450 1.6572 12 1 6.4928 -3.2639 2.2798 13 1 6.0838 -2.5488 -0.0013 14 6 1.6163 0.0717 2.4864 15 6 1.4428 -0.9072 3.6776 16 16 0.5999 -2.3176 2.8494 17 6 1.4903 -2.1568 1.2541 18 1 -0.3633 0.5139 0.8901 19 1 -0.3634 0.5140 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 3.1301 1.4423 0.0005 22 1 1.6768 1.9563 -0.8899 23 1 1.6768 1.9562 0.8900 24 1 1.6766 -1.7489 -1.2493 25 1 1.6766 -0.2074 -2.1392 26 1 3.1299 -0.7217 -1.2491 27 1 4.0903 -3.1725 3.2716 28 1 2.3817 0.8093 2.7278 29 1 0.6704 0.5768 2.2908 30 1 2.4089 -1.2094 4.0819 31 1 0.8123 -0.4737 4.4539 32 1 0.8033 -2.3023 0.4205 33 1 2.3079 -2.8758 1.2025 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261137456.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:27 Heat of formation + Delta-G solvation = -7.709581 kcal Electronic energy + Delta-G solvation = -13846.105316 eV Core-core repulsion = 11804.773625 eV Total energy + Delta-G solvation = -2041.331691 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.40097 -33.26308 -31.20403 -28.20103 -27.14484 -26.28199 -24.69788 -22.74662 -20.24740 -17.57755 -15.77676 -15.22747 -14.96576 -13.99691 -13.42349 -13.20272 -13.09462 -12.44105 -11.90921 -11.66179 -11.37961 -11.26045 -10.95021 -10.86469 -10.73465 -10.62601 -10.35808 -10.35111 -10.16318 -9.97098 -9.42651 -9.24461 -8.66927 -8.35041 -8.15622 -6.24148 -5.98403 -4.07167 3.27446 3.35080 3.37603 3.53527 3.89553 4.39584 5.17815 5.70315 5.77188 5.83143 6.20438 6.24173 6.33298 6.38435 6.47575 6.51355 6.55895 6.63563 6.67962 6.74564 6.81966 6.91869 7.08661 7.18771 7.20115 7.28049 7.43376 7.56584 7.77215 7.93678 8.37951 8.86890 9.51736 10.94230 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.026103 B = 0.017808 C = 0.012946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.411495 B = 1571.980719 C = 2162.335945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C -0.131 4.131 4 C -0.127 4.127 5 C 0.078 3.922 6 C -0.513 4.513 7 H 0.062 0.938 8 C 0.066 3.934 9 N -0.860 5.860 10 Si 0.878 3.122 11 H -0.280 1.280 12 H -0.289 1.289 13 H -0.278 1.278 14 C -0.099 4.099 15 C -0.036 4.036 16 S -0.358 6.358 17 C -0.013 4.013 18 H 0.052 0.948 19 H 0.036 0.964 20 H 0.053 0.947 21 H 0.060 0.940 22 H 0.031 0.969 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.029 0.971 26 H 0.064 0.936 27 H 0.263 0.737 28 H 0.059 0.941 29 H 0.038 0.962 30 H 0.113 0.887 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.007 3.681 -3.044 5.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.054 4.054 3 C -0.188 4.188 4 C -0.185 4.185 5 C 0.077 3.923 6 C -0.551 4.551 7 H 0.080 0.920 8 C -0.137 4.137 9 N -0.497 5.497 10 Si 0.705 3.295 11 H -0.205 1.205 12 H -0.215 1.215 13 H -0.204 1.204 14 C -0.138 4.138 15 C -0.184 4.184 16 S -0.132 6.132 17 C -0.161 4.161 18 H 0.071 0.929 19 H 0.055 0.945 20 H 0.072 0.928 21 H 0.079 0.921 22 H 0.050 0.950 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.048 0.952 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.131 0.869 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.836 2.729 -2.513 5.337 hybrid contribution 1.945 0.405 -0.505 2.050 sum -1.891 3.134 -3.018 4.744 Atomic orbital electron populations 1.22018 0.96720 1.01279 1.00012 1.20546 0.93134 0.95061 0.96682 1.21820 1.01696 0.95890 0.99375 1.21780 1.02150 0.99108 0.95425 1.18576 0.95531 0.88819 0.89411 1.21103 0.90093 1.12179 1.31721 0.92012 1.24962 0.97506 0.96686 0.94502 1.70144 1.36674 1.22565 1.20312 0.86892 0.85998 0.77951 0.78628 1.20526 1.21486 1.20363 1.22570 0.98393 0.97837 0.94991 1.24174 1.02855 0.93184 0.98156 1.86493 1.54457 1.51460 1.20773 1.24024 0.99281 1.02363 0.90457 0.92873 0.94528 0.92810 0.92101 0.94953 0.93483 0.93591 0.95215 0.91664 0.92702 0.92235 0.94333 0.86886 0.92555 0.92865 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 7.97 37.16 0.30 -2.24 16 2 C -0.05 -1.02 0.29 -154.51 -0.05 -1.07 16 3 C -0.13 -2.34 7.94 37.15 0.29 -2.04 16 4 C -0.13 -2.37 7.93 37.16 0.29 -2.08 16 5 C 0.08 1.72 0.09 -155.32 -0.01 1.71 16 6 C -0.51 -12.44 6.00 -34.44 -0.21 -12.65 16 7 H 0.06 1.51 6.06 -52.49 -0.32 1.19 16 8 C 0.07 1.66 4.50 -17.82 -0.08 1.58 16 9 N -0.86 -22.18 7.70 55.43 0.43 -21.75 16 10 Si 0.88 19.99 29.57 -169.99 -5.03 14.96 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 C -0.10 -2.13 3.83 -25.62 -0.10 -2.23 16 15 C -0.04 -0.80 6.81 38.30 0.26 -0.54 16 16 S -0.36 -8.30 22.46 -107.50 -2.41 -10.72 16 17 C -0.01 -0.31 4.60 37.52 0.17 -0.14 16 18 H 0.05 0.94 6.16 -51.92 -0.32 0.62 16 19 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 20 H 0.05 0.98 6.21 -51.93 -0.32 0.66 16 21 H 0.06 1.15 6.39 -51.93 -0.33 0.82 16 22 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.82 6.82 -51.93 -0.35 0.47 16 24 H 0.05 0.86 6.60 -51.93 -0.34 0.52 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 1.29 6.97 -51.93 -0.36 0.93 16 27 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 28 H 0.06 1.31 7.70 -51.93 -0.40 0.91 16 29 H 0.04 0.78 5.51 -51.93 -0.29 0.49 16 30 H 0.11 2.79 6.18 -51.93 -0.32 2.47 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.05 1.17 4.86 -51.93 -0.25 0.91 16 33 H 0.10 2.54 5.62 -51.93 -0.29 2.25 16 LS Contribution 246.95 15.07 3.72 3.72 Total: -1.00 -24.95 246.95 -7.15 -32.09 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -4.73 Total: 1.38 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: 0.88 Total: -19.69 kcal Atomic # 7 Polarization: -22.18 SS G_CDS: 0.43 Total: -21.75 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.96 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -2.41 Total: -10.72 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -24.95 -7.15 -32.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137456.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.383 kcal (2) G-P(sol) polarization free energy of solvation -24.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds