Wall clock time and date at job start Mon Mar 30 2020 02:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47514 * 2 1 4 4 C 1.53003 * 109.46766 * 239.99946 * 2 1 3 5 5 C 1.53003 * 109.47051 * 120.00607 * 2 1 3 6 6 C 1.50697 * 108.84875 * 177.12012 * 5 2 1 7 7 H 1.08001 * 120.00569 * 25.83920 * 6 5 2 8 8 C 1.37879 * 119.99703 * 205.84040 * 6 5 2 9 9 N 1.31511 * 120.00469 * 342.43811 * 8 6 5 10 10 Si 1.86804 * 119.99935 * 162.43591 * 8 6 5 11 11 H 1.48501 * 109.46984 * 59.99982 * 10 8 6 12 12 H 1.48503 * 109.47178 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47166 * 300.00142 * 10 8 6 14 14 C 1.52942 * 108.88308 * 295.55944 * 5 2 1 15 15 C 1.55154 * 108.96026 * 150.89607 * 14 5 2 16 16 S 1.83994 * 100.91023 * 318.56309 * 15 14 5 17 17 C 1.53706 * 108.88810 * 58.54138 * 5 2 1 18 18 H 1.09008 * 109.46553 * 299.99907 * 1 2 3 19 19 H 1.09005 * 109.47225 * 59.99284 * 1 2 3 20 20 H 1.08995 * 109.47354 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47113 * 179.97438 * 3 2 1 22 22 H 1.08998 * 109.47530 * 300.00180 * 3 2 1 23 23 H 1.08999 * 109.47117 * 60.00294 * 3 2 1 24 24 H 1.08995 * 109.47455 * 300.00270 * 4 2 1 25 25 H 1.08998 * 109.46904 * 60.00660 * 4 2 1 26 26 H 1.09003 * 109.47185 * 180.02562 * 4 2 1 27 27 H 0.96991 * 120.00411 * 179.97438 * 9 8 6 28 28 H 1.09003 * 109.60606 * 270.82487 * 14 5 2 29 29 H 1.09000 * 109.60652 * 31.14705 * 14 5 2 30 30 H 1.09006 * 111.13168 * 76.46787 * 15 14 5 31 31 H 1.08996 * 111.13759 * 200.64930 * 15 14 5 32 32 H 1.08996 * 110.34383 * 355.25263 * 17 5 2 33 33 H 1.09000 * 110.33952 * 117.51439 * 17 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2492 6 6 3.5452 -0.7756 1.1997 7 1 4.0945 -0.0300 0.6440 8 6 4.2211 -1.7771 1.8639 9 7 3.6149 -2.4677 2.8047 10 14 5.9981 -2.1531 1.4274 11 1 6.8305 -0.9450 1.6572 12 1 6.4928 -3.2639 2.2798 13 1 6.0838 -2.5488 -0.0013 14 6 1.6163 0.0717 2.4864 15 6 1.4428 -0.9072 3.6776 16 16 0.5999 -2.3176 2.8494 17 6 1.4903 -2.1568 1.2541 18 1 -0.3633 0.5139 0.8901 19 1 -0.3634 0.5140 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 3.1301 1.4423 0.0005 22 1 1.6768 1.9563 -0.8899 23 1 1.6768 1.9562 0.8900 24 1 1.6766 -1.7489 -1.2493 25 1 1.6766 -0.2074 -2.1392 26 1 3.1299 -0.7217 -1.2491 27 1 4.0903 -3.1725 3.2716 28 1 2.3817 0.8093 2.7278 29 1 0.6704 0.5768 2.2908 30 1 2.4089 -1.2094 4.0819 31 1 0.8123 -0.4737 4.4539 32 1 0.8033 -2.3023 0.4205 33 1 2.3079 -2.8758 1.2025 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261137456.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:27 Heat of formation + Delta-G solvation = -19.034931 kcal Electronic energy + Delta-G solvation = -13846.596420 eV Core-core repulsion = 11804.773625 eV Total energy + Delta-G solvation = -2041.822795 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.04210 -35.00703 -32.99663 -29.93890 -28.72509 -27.80056 -26.43114 -24.50985 -21.92603 -19.29527 -17.58485 -16.91836 -16.81287 -15.77365 -15.04933 -14.89531 -14.69084 -14.15479 -13.56062 -13.41888 -12.89718 -12.84101 -12.67841 -12.54103 -12.42421 -12.28273 -12.10099 -12.03436 -11.90366 -11.59688 -11.06211 -10.91815 -10.37396 -10.24185 -9.98580 -8.11196 -7.89826 -6.00949 1.42971 1.48849 1.51934 1.72392 2.07049 2.50491 3.25246 4.15235 4.26444 4.32281 4.55052 4.61036 4.74964 4.83898 4.94832 5.00092 5.02802 5.07525 5.15645 5.20808 5.26732 5.32554 5.43109 5.49886 5.60969 5.69902 5.75592 5.86945 5.97448 6.09128 6.52334 6.96189 7.58263 8.99270 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.026103 B = 0.017808 C = 0.012946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.411495 B = 1571.980719 C = 2162.335945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.056 4.056 3 C -0.126 4.126 4 C -0.124 4.124 5 C 0.074 3.926 6 C -0.513 4.513 7 H 0.057 0.943 8 C 0.030 3.970 9 N -0.876 5.876 10 Si 0.923 3.077 11 H -0.280 1.280 12 H -0.296 1.296 13 H -0.279 1.279 14 C -0.092 4.092 15 C -0.033 4.033 16 S -0.370 6.370 17 C -0.006 4.006 18 H 0.052 0.948 19 H 0.061 0.939 20 H 0.044 0.956 21 H 0.044 0.956 22 H 0.056 0.944 23 H 0.048 0.952 24 H 0.037 0.963 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.255 0.745 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.804 4.811 -3.924 7.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.057 4.057 3 C -0.183 4.183 4 C -0.181 4.181 5 C 0.072 3.928 6 C -0.551 4.551 7 H 0.075 0.925 8 C -0.171 4.171 9 N -0.514 5.514 10 Si 0.752 3.248 11 H -0.205 1.205 12 H -0.223 1.223 13 H -0.205 1.205 14 C -0.132 4.132 15 C -0.181 4.181 16 S -0.144 6.144 17 C -0.154 4.154 18 H 0.071 0.929 19 H 0.080 0.920 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.627 3.867 -3.401 6.923 hybrid contribution 2.195 0.057 -0.239 2.209 sum -2.432 3.923 -3.639 5.878 Atomic orbital electron populations 1.21937 0.95148 1.01062 1.01238 1.20552 0.94383 0.95506 0.95248 1.21758 1.00662 0.95168 1.00725 1.21732 1.00945 0.99041 0.96423 1.18629 0.94258 0.88658 0.91255 1.21329 0.91558 1.11595 1.30644 0.92493 1.25418 0.99765 0.97131 0.94774 1.70261 1.37253 1.22832 1.21025 0.86170 0.83408 0.77288 0.77967 1.20533 1.22267 1.20469 1.22493 0.98977 0.97367 0.94316 1.24156 1.01954 0.93028 0.98987 1.86482 1.54176 1.52446 1.21278 1.23915 0.98443 1.02344 0.90719 0.92918 0.92012 0.93724 0.93671 0.92459 0.93281 0.94348 0.92535 0.93487 0.93543 0.92970 0.92540 0.89374 0.90294 0.91752 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.39 7.97 71.98 0.57 -3.82 16 2 C -0.06 -2.02 0.29 -52.18 -0.02 -2.03 16 3 C -0.13 -4.16 7.94 71.98 0.57 -3.59 16 4 C -0.12 -4.36 7.93 71.98 0.57 -3.79 16 5 C 0.07 3.16 0.09 -52.71 0.00 3.15 16 6 C -0.51 -24.66 6.00 25.60 0.15 -24.51 16 7 H 0.06 2.76 6.06 -2.91 -0.02 2.74 16 8 C 0.03 1.49 4.50 84.66 0.38 1.88 16 9 N -0.88 -45.67 7.70 21.45 0.17 -45.50 16 10 Si 0.92 41.36 29.57 68.60 2.03 43.39 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 13 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 14 C -0.09 -3.85 3.83 31.31 0.12 -3.73 16 15 C -0.03 -1.46 6.81 72.72 0.50 -0.97 16 16 S -0.37 -16.86 22.46 -56.49 -1.27 -18.13 16 17 C -0.01 -0.28 4.60 72.22 0.33 0.05 16 18 H 0.05 1.69 6.16 -2.38 -0.01 1.67 16 19 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 20 H 0.04 1.50 6.21 -2.39 -0.01 1.49 16 21 H 0.04 1.62 6.39 -2.39 -0.02 1.60 16 22 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.05 1.58 6.82 -2.39 -0.02 1.56 16 24 H 0.04 1.37 6.60 -2.39 -0.02 1.36 16 25 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.05 1.80 6.97 -2.39 -0.02 1.78 16 27 H 0.25 13.33 8.31 -92.72 -0.77 12.56 16 28 H 0.05 2.23 7.70 -2.39 -0.02 2.22 16 29 H 0.06 2.14 5.51 -2.39 -0.01 2.13 16 30 H 0.09 4.35 6.18 -2.38 -0.01 4.33 16 31 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 32 H 0.06 2.76 4.86 -2.39 -0.01 2.74 16 33 H 0.07 3.49 5.62 -2.39 -0.01 3.48 16 Total: -1.00 -51.49 246.95 5.19 -46.29 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 1.09 Total: 11.28 kcal Atomic # 6 Polarization: -40.52 SS G_CDS: 3.18 Total: -37.34 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.17 Total: -45.50 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 16 Polarization: -16.86 SS G_CDS: -1.27 Total: -18.13 kcal Total: -51.49 5.19 -46.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137456.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.259 kcal (2) G-P(sol) polarization free energy of solvation -51.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds