Wall clock time and date at job start Mon Mar 30 2020 02:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47131 * 2 1 4 4 C 1.52998 * 109.47286 * 239.99610 * 2 1 3 5 5 C 1.53003 * 109.46623 * 119.99968 * 2 1 3 6 6 C 1.50702 * 109.60005 * 89.65057 * 5 2 1 7 7 H 1.07999 * 120.00380 * 263.54782 * 6 5 2 8 8 C 1.37882 * 119.99919 * 83.81669 * 6 5 2 9 9 N 1.31519 * 119.99881 * 178.49627 * 8 6 5 10 10 Si 1.86798 * 119.99997 * 358.50274 * 8 6 5 11 11 H 1.48508 * 109.47014 * 96.38298 * 10 8 6 12 12 H 1.48496 * 109.47146 * 216.38456 * 10 8 6 13 13 H 1.48500 * 109.47348 * 336.38708 * 10 8 6 14 14 C 1.52933 * 109.60475 * 329.32697 * 5 2 1 15 15 C 1.53703 * 112.49126 * 210.15210 * 14 5 2 16 16 S 1.83403 * 104.96913 * 2.82588 * 15 14 5 17 17 C 1.55155 * 109.45052 * 209.87784 * 5 2 1 18 18 H 1.08991 * 109.47402 * 300.00385 * 1 2 3 19 19 H 1.09005 * 109.46694 * 60.00357 * 1 2 3 20 20 H 1.08995 * 109.47475 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46904 * 186.20873 * 3 2 1 22 22 H 1.08996 * 109.47171 * 306.20603 * 3 2 1 23 23 H 1.09001 * 109.47221 * 66.21037 * 3 2 1 24 24 H 1.08994 * 109.47513 * 282.71725 * 4 2 1 25 25 H 1.09007 * 109.46976 * 42.70971 * 4 2 1 26 26 H 1.08997 * 109.47228 * 162.71048 * 4 2 1 27 27 H 0.96997 * 119.99717 * 180.02562 * 9 8 6 28 28 H 1.08997 * 108.88860 * 330.94644 * 14 5 2 29 29 H 1.09000 * 108.89026 * 89.49948 * 14 5 2 30 30 H 1.09000 * 110.34428 * 121.69439 * 15 14 5 31 31 H 1.09002 * 110.34653 * 243.95363 * 15 14 5 32 32 H 1.08993 * 111.13352 * 279.19171 * 17 5 2 33 33 H 1.08998 * 111.13089 * 43.37486 * 17 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2493 6 6 2.2002 -2.1905 0.9548 7 1 1.4146 -2.8831 1.2187 8 6 3.3522 -2.6514 0.3533 9 7 3.5046 -3.9373 0.1232 10 14 4.6964 -1.4494 -0.1343 11 1 5.7292 -1.4026 0.9318 12 1 5.3188 -1.8928 -1.4075 13 1 4.1097 -0.0972 -0.3147 14 6 1.0426 -0.5332 2.3934 15 6 1.7219 -0.5372 3.7721 16 16 3.5147 -0.6894 3.4165 17 6 3.4081 -0.1223 1.6695 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 -1.0276 -0.0005 21 1 3.1243 1.4444 -0.1111 22 1 1.5888 1.9873 -0.8292 23 1 1.7703 1.9232 0.9404 24 1 1.9479 -1.7984 -1.1099 25 1 1.4492 -0.4148 -2.1124 26 1 3.0862 -0.4646 -1.4153 27 1 4.3152 -4.2615 -0.2996 28 1 0.5251 0.4165 2.2578 29 1 0.3112 -1.3407 2.3603 30 1 1.5178 0.3956 4.2978 31 1 1.3789 -1.3878 4.3611 32 1 4.2192 -0.5376 1.0714 33 1 3.3956 0.9660 1.6097 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261137457.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:29 Heat of formation + Delta-G solvation = 30.954301 kcal Electronic energy + Delta-G solvation = -13997.274431 eV Core-core repulsion = 11957.619331 eV Total energy + Delta-G solvation = -2039.655100 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.58559 -34.53575 -34.13619 -31.14582 -29.01877 -28.15726 -26.26724 -24.82513 -22.16647 -19.66938 -18.34057 -17.86005 -17.02098 -16.00696 -15.45834 -15.17148 -14.88888 -14.61528 -14.42145 -13.57218 -13.51662 -13.12318 -12.80717 -12.74352 -12.43587 -12.14703 -12.02183 -11.90445 -11.79201 -11.45359 -11.02016 -10.60672 -10.54221 -10.48211 -10.14059 -8.45427 -8.25402 -6.17525 1.07741 1.23742 1.27456 1.37218 1.62429 2.28436 3.12837 3.83520 3.93349 4.09443 4.19234 4.27110 4.35242 4.45719 4.57843 4.60330 4.86366 4.89652 4.98014 5.00167 5.07184 5.11423 5.20600 5.30062 5.35868 5.46989 5.68144 5.71116 5.77159 5.97497 6.35519 6.79492 7.40623 8.91600 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.024408 B = 0.021781 C = 0.016081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.873849 B = 1285.222256 C = 1740.715262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.055 4.055 3 C -0.146 4.146 4 C -0.164 4.164 5 C 0.048 3.952 6 C -0.469 4.469 7 H 0.038 0.962 8 C 0.032 3.968 9 N -0.948 5.948 10 Si 0.923 3.077 11 H -0.317 1.317 12 H -0.320 1.320 13 H -0.191 1.191 14 C -0.107 4.107 15 C -0.042 4.042 16 S -0.377 6.377 17 C -0.063 4.063 18 H 0.073 0.927 19 H 0.059 0.941 20 H 0.037 0.963 21 H 0.047 0.953 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.037 0.963 27 H 0.258 0.742 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.449 12.744 1.328 13.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.057 4.057 3 C -0.203 4.203 4 C -0.221 4.221 5 C 0.045 3.955 6 C -0.507 4.507 7 H 0.056 0.944 8 C -0.165 4.165 9 N -0.589 5.589 10 Si 0.760 3.240 11 H -0.249 1.249 12 H -0.252 1.252 13 H -0.116 1.116 14 C -0.145 4.145 15 C -0.189 4.189 16 S -0.151 6.151 17 C -0.209 4.209 18 H 0.092 0.908 19 H 0.078 0.922 20 H 0.057 0.943 21 H 0.066 0.934 22 H 0.086 0.914 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.113 0.887 29 H 0.083 0.917 30 H 0.130 0.870 31 H 0.106 0.894 32 H 0.070 0.930 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.443 12.254 1.981 13.184 hybrid contribution 0.413 -0.322 -0.935 1.072 sum -4.031 11.932 1.045 12.638 Atomic orbital electron populations 1.21893 0.93642 1.01053 1.02018 1.20612 0.96378 0.94251 0.94493 1.22145 1.00410 0.95349 1.02433 1.22486 0.99285 1.03091 0.97193 1.19513 0.88729 0.93779 0.93436 1.20834 1.01941 0.91501 1.36458 0.94413 1.25657 0.99701 0.95567 0.95529 1.70010 1.28083 1.15068 1.45764 0.86804 0.79327 0.83552 0.74279 1.24864 1.25152 1.11637 1.22121 0.98582 1.02986 0.90857 1.23901 0.88880 1.05451 1.00708 1.87552 1.17626 1.91197 1.18757 1.25692 1.01792 1.03082 0.90338 0.90836 0.92182 0.94341 0.93428 0.91417 0.91292 0.91690 0.92754 0.94407 0.93263 0.88735 0.91727 0.87015 0.89355 0.93049 0.86657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 7.52 71.98 0.54 -3.23 16 2 C -0.06 -1.90 0.41 -52.18 -0.02 -1.93 16 3 C -0.15 -4.09 6.96 71.98 0.50 -3.59 16 4 C -0.16 -6.48 6.87 71.98 0.49 -5.99 16 5 C 0.05 1.93 0.22 -52.21 -0.01 1.91 16 6 C -0.47 -24.64 6.76 25.60 0.17 -24.47 16 7 H 0.04 2.24 7.78 -2.91 -0.02 2.22 16 8 C 0.03 1.79 4.18 84.66 0.35 2.15 16 9 N -0.95 -59.32 13.96 21.45 0.30 -59.02 16 10 Si 0.92 45.52 21.00 68.60 1.44 46.96 16 11 H -0.32 -16.63 7.11 99.48 0.71 -15.93 16 12 H -0.32 -16.31 7.11 99.48 0.71 -15.60 16 13 H -0.19 -7.86 2.53 99.48 0.25 -7.61 16 14 C -0.11 -3.60 4.15 30.81 0.13 -3.48 16 15 C -0.04 -1.36 7.38 72.22 0.53 -0.83 16 16 S -0.38 -15.91 22.84 -56.49 -1.29 -17.20 16 17 C -0.06 -2.58 4.11 72.72 0.30 -2.28 16 18 H 0.07 1.80 5.82 -2.39 -0.01 1.79 16 19 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 20 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 21 H 0.05 1.42 5.22 -2.39 -0.01 1.40 16 22 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.07 1.66 7.58 -2.39 -0.02 1.64 16 24 H 0.06 3.12 5.01 -2.39 -0.01 3.11 16 25 H 0.05 1.83 8.02 -2.38 -0.02 1.81 16 26 H 0.04 1.51 3.75 -2.39 -0.01 1.50 16 27 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 28 H 0.09 2.50 5.73 -2.39 -0.01 2.48 16 29 H 0.06 2.30 7.62 -2.39 -0.02 2.29 16 30 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 31 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.05 2.38 0.67 -2.39 0.00 2.37 16 33 H 0.12 3.96 5.46 -2.39 -0.01 3.95 16 Total: -1.00 -64.87 234.79 4.08 -60.79 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 0.64 Total: 10.20 kcal Atomic # 6 Polarization: -44.71 SS G_CDS: 2.99 Total: -41.72 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: 0.30 Total: -59.02 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.44 Total: 46.96 kcal Atomic # 16 Polarization: -15.91 SS G_CDS: -1.29 Total: -17.20 kcal Total: -64.87 4.08 -60.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137457.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.740 kcal (2) G-P(sol) polarization free energy of solvation -64.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds