Wall clock time and date at job start Mon Mar 30 2020 02:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38561 * 119.89525 * 2 1 4 4 C 1.38576 * 120.55806 * 180.67978 * 3 2 1 5 5 C 1.37685 * 120.07256 * 359.51855 * 4 3 2 6 6 C 1.40285 * 119.71288 * 359.01881 * 5 4 3 7 7 C 1.37819 * 119.89142 * 180.02562 * 2 1 3 8 8 C 1.46262 * 119.39125 * 183.02119 * 6 5 4 9 9 C 1.38188 * 119.31478 * 15.08465 * 8 6 5 10 10 C 1.38804 * 119.73945 * 182.49122 * 9 8 6 11 11 H 1.07997 * 120.00032 * 23.71284 * 10 9 8 12 12 C 1.40654 * 119.99815 * 203.70500 * 10 9 8 13 13 N 1.30535 * 120.00238 * 11.21685 * 12 10 9 14 14 Si 1.86797 * 120.00040 * 191.21289 * 12 10 9 15 15 H 1.48505 * 109.47321 * 60.00116 * 14 12 10 16 16 H 1.48505 * 109.47411 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47391 * 300.00127 * 14 12 10 18 18 C 1.50474 * 120.51905 * 2.51308 * 9 8 6 19 19 C 1.50557 * 120.45223 * 178.61617 * 5 4 3 20 20 H 1.09003 * 109.47308 * 90.00031 * 1 2 3 21 21 H 1.09001 * 109.47151 * 209.99877 * 1 2 3 22 22 H 1.08997 * 109.46935 * 329.99723 * 1 2 3 23 23 H 1.08001 * 119.72129 * 0.95949 * 3 2 1 24 24 H 1.08001 * 119.96363 * 179.50151 * 4 3 2 25 25 H 1.07999 * 120.22932 * 0.56934 * 7 2 1 26 26 H 1.07997 * 120.34601 * 195.08446 * 8 6 5 27 27 H 0.97004 * 120.00343 * 180.02562 * 13 12 10 28 28 H 1.09003 * 109.22011 * 203.94242 * 18 9 8 29 29 H 1.08997 * 109.22226 * 84.59334 * 18 9 8 30 30 H 1.09002 * 109.33014 * 264.33097 * 19 5 4 31 31 H 1.09007 * 109.32805 * 23.80896 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1975 1.2012 0.0000 4 6 3.5831 1.2173 -0.0142 5 6 4.2868 0.0339 -0.0184 6 6 3.5954 -1.1864 0.0126 7 6 2.1938 -1.1949 -0.0005 8 6 4.3501 -2.4377 0.0750 9 6 5.6889 -2.4040 0.4157 10 6 6.4263 -3.5800 0.4272 11 1 6.1081 -4.4226 -0.1686 12 6 7.5879 -3.6740 1.2147 13 7 7.8552 -2.7494 2.0966 14 14 8.7481 -5.1219 0.9986 15 1 9.2575 -5.1443 -0.3961 16 1 9.8884 -4.9875 1.9404 17 1 8.0206 -6.3856 1.2802 18 6 6.3536 -1.1026 0.7748 19 6 5.7917 0.0411 -0.0651 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5139 23 1 1.6514 2.1328 0.0157 24 1 4.1116 2.1592 -0.0222 25 1 1.6558 -2.1313 -0.0102 26 1 3.8661 -3.3782 -0.1429 27 1 8.6565 -2.8141 2.6394 28 1 7.4256 -1.1860 0.5963 29 1 6.1815 -0.8911 1.8302 30 1 6.1212 -0.0739 -1.0977 31 1 6.1602 0.9900 0.3249 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261152708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:01 Heat of formation + Delta-G solvation = -10.253529 kcal Electronic energy + Delta-G solvation = -13495.635450 eV Core-core repulsion = 11318.749494 eV Total energy + Delta-G solvation = -2176.885956 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.32736 -37.64163 -35.23449 -33.14175 -31.83020 -30.62993 -27.25613 -27.07775 -23.59498 -22.91031 -22.05419 -19.62474 -17.90386 -17.12031 -16.59658 -15.96663 -15.64997 -15.08648 -14.71079 -14.35230 -14.19525 -13.53213 -13.46468 -13.22922 -12.98263 -12.81813 -12.79171 -12.45896 -12.23901 -12.06186 -11.81726 -11.27664 -11.08228 -10.97174 -10.31169 -9.29413 -8.93931 -8.56906 -6.37377 0.48974 0.75201 1.33500 1.36661 1.48501 1.94936 2.13834 2.92125 3.41542 4.08216 4.17671 4.34299 4.41230 4.47278 4.59525 4.75547 4.83430 4.86976 4.89899 5.00769 5.06136 5.09495 5.18381 5.28870 5.46889 5.51803 5.64117 5.76012 5.81010 5.97091 6.04480 6.32384 6.38932 6.52385 6.91408 6.99476 8.09232 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.056795 B = 0.007404 C = 0.006780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.879386 B = 3780.810860 C = 4128.789936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.079 4.079 3 C -0.192 4.192 4 C -0.099 4.099 5 C -0.168 4.168 6 C 0.024 3.976 7 C -0.197 4.197 8 C -0.426 4.426 9 C 0.090 3.910 10 C -0.468 4.468 11 H 0.075 0.925 12 C 0.034 3.966 13 N -0.799 5.799 14 Si 0.992 3.008 15 H -0.256 1.256 16 H -0.258 1.258 17 H -0.262 1.262 18 C -0.049 4.049 19 C -0.066 4.066 20 H 0.077 0.923 21 H 0.062 0.938 22 H 0.080 0.920 23 H 0.137 0.863 24 H 0.133 0.867 25 H 0.103 0.897 26 H 0.067 0.933 27 H 0.300 0.700 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.664 4.275 -1.401 5.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.079 4.079 3 C -0.210 4.210 4 C -0.117 4.117 5 C -0.168 4.168 6 C 0.024 3.976 7 C -0.215 4.215 8 C -0.446 4.446 9 C 0.086 3.914 10 C -0.494 4.494 11 H 0.093 0.907 12 C -0.185 4.185 13 N -0.422 5.422 14 Si 0.811 3.189 15 H -0.180 1.180 16 H -0.182 1.182 17 H -0.186 1.186 18 C -0.086 4.086 19 C -0.103 4.103 20 H 0.095 0.905 21 H 0.081 0.919 22 H 0.099 0.901 23 H 0.155 0.845 24 H 0.151 0.849 25 H 0.122 0.878 26 H 0.085 0.915 27 H 0.111 0.889 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.478 4.368 -1.187 5.160 hybrid contribution 0.459 -0.994 0.021 1.095 sum -2.019 3.374 -1.166 4.101 Atomic orbital electron populations 1.20757 0.89462 1.03056 1.02726 1.20072 0.97138 0.92579 0.98096 1.21024 0.93760 0.97518 1.08702 1.21022 0.94662 0.96781 0.99189 1.20096 0.95716 0.93084 1.07925 1.19054 0.93177 0.93319 0.92052 1.21050 0.93044 0.97588 1.09865 1.21036 0.94529 0.93609 1.35476 1.19593 0.91421 0.94237 0.86104 1.19797 1.06796 1.00219 1.22632 0.90708 1.27121 0.98599 1.00581 0.92242 1.69719 1.24997 1.33254 1.14241 0.85097 0.76872 0.77024 0.79910 1.18042 1.18161 1.18587 1.20102 0.98654 0.92027 0.97838 1.20309 0.91625 0.98812 0.99561 0.90481 0.91862 0.90129 0.84504 0.84924 0.87849 0.91460 0.88857 0.91670 0.93515 0.92596 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.77 10.01 71.23 0.71 -2.06 16 2 C -0.08 -2.91 5.88 -19.89 -0.12 -3.03 16 3 C -0.19 -6.75 9.69 22.43 0.22 -6.53 16 4 C -0.10 -3.77 9.68 22.22 0.22 -3.56 16 5 C -0.17 -7.67 5.67 -19.54 -0.11 -7.78 16 6 C 0.02 1.22 5.80 -20.22 -0.12 1.10 16 7 C -0.20 -8.77 9.49 22.64 0.21 -8.56 16 8 C -0.43 -23.63 9.68 24.34 0.24 -23.40 16 9 C 0.09 4.94 5.50 -19.81 -0.11 4.83 16 10 C -0.47 -25.11 8.94 23.00 0.21 -24.90 16 11 H 0.07 3.97 7.88 -2.91 -0.02 3.95 16 12 C 0.03 1.63 5.14 85.48 0.44 2.07 16 13 N -0.80 -38.68 10.69 21.96 0.23 -38.45 16 14 Si 0.99 35.86 29.58 68.60 2.03 37.89 16 15 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 16 H -0.26 -8.54 7.11 99.48 0.71 -7.83 16 17 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 18 C -0.05 -2.45 4.27 29.65 0.13 -2.32 16 19 C -0.07 -2.88 5.92 29.68 0.18 -2.71 16 20 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 21 H 0.06 1.63 8.08 -2.39 -0.02 1.61 16 22 H 0.08 1.79 8.08 -2.39 -0.02 1.77 16 23 H 0.14 3.79 8.06 -2.91 -0.02 3.76 16 24 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 25 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 26 H 0.07 3.81 8.06 -2.91 -0.02 3.79 16 27 H 0.30 12.84 8.29 -92.71 -0.77 12.07 16 28 H 0.06 3.25 6.66 -2.39 -0.02 3.23 16 29 H 0.05 2.46 7.95 -2.39 -0.02 2.44 16 30 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.08 3.01 8.05 -2.38 -0.02 2.99 16 Total: -1.00 -59.36 260.75 5.46 -53.90 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 1.10 Total: 23.50 kcal Atomic # 6 Polarization: -78.92 SS G_CDS: 2.09 Total: -76.84 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.23 Total: -38.45 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.03 Total: 37.89 kcal Total: -59.36 5.46 -53.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261152708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.645 kcal (2) G-P(sol) polarization free energy of solvation -59.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds