Wall clock time and date at job start Mon Mar 30 2020 02:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47484 * 2 1 4 4 H 1.09007 * 109.47168 * 305.00039 * 3 2 1 5 5 C 1.53001 * 109.47256 * 65.00084 * 3 2 1 6 6 C 1.53006 * 109.47440 * 185.00461 * 3 2 1 7 7 C 1.50704 * 108.72860 * 302.94030 * 6 3 2 8 8 H 1.07996 * 120.00187 * 334.02920 * 7 6 3 9 9 C 1.37875 * 120.00058 * 154.02222 * 7 6 3 10 10 N 1.31519 * 119.99953 * 11.44205 * 9 7 6 11 11 Si 1.86793 * 120.00294 * 191.44044 * 9 7 6 12 12 H 1.48497 * 109.47311 * 90.00037 * 11 9 7 13 13 H 1.48505 * 109.47304 * 209.99893 * 11 9 7 14 14 H 1.48498 * 109.47035 * 330.00041 * 11 9 7 15 15 C 1.52937 * 108.88799 * 184.43398 * 6 3 2 16 16 C 1.55158 * 108.96014 * 209.10299 * 15 6 3 17 17 S 1.83988 * 100.90824 * 41.43881 * 16 15 6 18 18 C 1.53701 * 108.88698 * 61.44993 * 6 3 2 19 19 H 1.09001 * 109.46809 * 299.99916 * 1 2 3 20 20 H 1.09001 * 109.46966 * 59.99825 * 1 2 3 21 21 H 1.08999 * 109.47266 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46982 * 239.99575 * 2 1 3 23 23 H 1.09001 * 109.47479 * 120.00054 * 2 1 3 24 24 H 1.09005 * 109.46878 * 179.97438 * 5 3 2 25 25 H 1.09001 * 109.46698 * 299.99831 * 5 3 2 26 26 H 1.08994 * 109.46751 * 60.00425 * 5 3 2 27 27 H 0.96992 * 120.00053 * 180.02562 * 10 9 7 28 28 H 1.08999 * 109.60328 * 89.17466 * 15 6 3 29 29 H 1.08993 * 109.60728 * 329.03324 * 15 6 3 30 30 H 1.09001 * 111.13061 * 283.52782 * 16 15 6 31 31 H 1.09001 * 111.13120 * 159.35372 * 16 15 6 32 32 H 1.09000 * 110.34476 * 4.75078 * 18 6 3 33 33 H 1.09008 * 110.34206 * 242.49492 * 18 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6354 2.1265 1.3074 6 6 3.5649 1.4442 -0.1258 7 6 4.1448 0.6342 1.0050 8 1 3.5961 0.5268 1.9290 9 6 5.3756 0.0301 0.8600 10 7 6.1427 0.3378 -0.1631 11 14 5.9539 -1.2252 2.1165 12 1 5.5164 -2.5814 1.6988 13 1 7.4358 -1.1891 2.2065 14 1 5.3693 -0.9033 3.4430 15 6 4.0693 2.8836 -0.0132 16 6 5.3829 3.0227 -0.8270 17 16 4.9669 2.0453 -2.3293 18 6 3.9549 0.7872 -1.4595 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.9992 3.1540 1.3075 25 1 0.5490 2.1253 1.3969 26 1 2.0700 1.5875 2.1491 27 1 7.0084 -0.0874 -0.2654 28 1 4.2601 3.1234 1.0329 29 1 3.3186 3.5664 -0.4110 30 1 6.2248 2.5825 -0.2926 31 1 5.5810 4.0647 -1.0784 32 1 3.0634 0.5505 -2.0403 33 1 4.5419 -0.1137 -1.2808 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261163151.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:21 Heat of formation + Delta-G solvation = -15.021915 kcal Electronic energy + Delta-G solvation = -13591.523399 eV Core-core repulsion = 11549.874621 eV Total energy + Delta-G solvation = -2041.648778 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.88996 -33.53441 -31.54174 -28.93557 -28.03891 -25.31269 -23.47732 -22.77430 -19.81163 -18.65012 -15.76468 -15.02407 -14.98169 -14.13892 -13.76590 -13.45292 -12.86277 -12.64688 -12.03600 -11.70932 -11.53069 -11.30593 -10.93441 -10.87326 -10.81088 -10.64744 -10.40664 -10.24112 -10.08229 -9.84227 -9.44401 -9.28236 -8.75942 -8.31245 -8.23670 -6.23280 -5.93660 -4.09454 3.26315 3.35337 3.36680 3.52506 3.91327 4.38961 5.20460 5.62670 5.72174 5.80680 6.03707 6.17733 6.19126 6.25927 6.33391 6.47622 6.54969 6.61311 6.67997 6.75487 6.77985 6.88013 7.07056 7.14682 7.17422 7.26175 7.36611 7.54559 7.77403 7.95171 8.37894 8.86914 9.51214 10.95889 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.021323 B = 0.017914 C = 0.012055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.831000 B = 1562.660190 C = 2322.214879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.070 4.070 4 H 0.043 0.957 5 C -0.139 4.139 6 C 0.067 3.933 7 C -0.505 4.505 8 H 0.062 0.938 9 C 0.061 3.939 10 N -0.865 5.865 11 Si 0.882 3.118 12 H -0.282 1.282 13 H -0.289 1.289 14 H -0.276 1.276 15 C -0.096 4.096 16 C -0.034 4.034 17 S -0.357 6.357 18 C -0.014 4.014 19 H 0.049 0.951 20 H 0.044 0.956 21 H 0.042 0.958 22 H 0.055 0.945 23 H 0.070 0.930 24 H 0.045 0.955 25 H 0.034 0.966 26 H 0.060 0.940 27 H 0.261 0.739 28 H 0.060 0.940 29 H 0.033 0.967 30 H 0.106 0.894 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.633 1.564 0.801 5.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.089 4.089 4 H 0.061 0.939 5 C -0.196 4.196 6 C 0.066 3.934 7 C -0.544 4.544 8 H 0.080 0.920 9 C -0.141 4.141 10 N -0.502 5.502 11 Si 0.710 3.290 12 H -0.208 1.208 13 H -0.215 1.215 14 H -0.202 1.202 15 C -0.135 4.135 16 C -0.182 4.182 17 S -0.131 6.131 18 C -0.162 4.162 19 H 0.068 0.932 20 H 0.063 0.937 21 H 0.061 0.939 22 H 0.074 0.926 23 H 0.089 0.911 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.052 0.948 30 H 0.124 0.876 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.138 1.657 -0.463 5.418 hybrid contribution 0.218 -0.911 1.824 2.050 sum -4.920 0.746 1.360 5.159 Atomic orbital electron populations 1.21890 0.98043 1.00206 1.00873 1.21506 0.92904 0.97660 1.02579 1.21175 0.97101 0.94689 0.95980 0.93850 1.21855 0.98549 1.00121 0.99048 1.18670 0.90197 0.91340 0.93208 1.21177 1.02587 1.30874 0.99721 0.91980 1.25012 0.96634 0.96830 0.95617 1.70178 1.10027 1.41124 1.28918 0.86749 0.77756 0.82425 0.82029 1.20798 1.21509 1.20153 1.22494 0.93978 0.98272 0.98785 1.24071 1.02511 0.97052 0.94602 1.86486 1.70743 1.36686 1.19175 1.24050 0.96355 1.00465 0.95289 0.93168 0.93732 0.93914 0.92636 0.91139 0.93627 0.94694 0.92104 0.92794 0.92101 0.94818 0.87604 0.92305 0.93624 0.87186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.67 37.16 0.36 -1.95 16 2 C -0.11 -2.00 4.82 -26.74 -0.13 -2.13 16 3 C -0.07 -1.36 1.36 -90.62 -0.12 -1.49 16 4 H 0.04 0.84 8.14 -51.92 -0.42 0.42 16 5 C -0.14 -2.46 8.41 37.16 0.31 -2.15 16 6 C 0.07 1.50 0.34 -155.32 -0.05 1.45 16 7 C -0.51 -12.21 6.12 -34.44 -0.21 -12.42 16 8 H 0.06 1.52 6.01 -52.49 -0.32 1.20 16 9 C 0.06 1.53 4.70 -17.82 -0.08 1.44 16 10 N -0.86 -22.33 7.57 55.43 0.42 -21.91 16 11 Si 0.88 20.03 29.55 -169.99 -5.02 15.01 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 15 C -0.10 -2.08 3.95 -25.62 -0.10 -2.18 16 16 C -0.03 -0.77 6.85 38.30 0.26 -0.51 16 17 S -0.36 -8.39 22.41 -107.50 -2.41 -10.79 16 18 C -0.01 -0.32 4.99 37.52 0.19 -0.13 16 19 H 0.05 0.72 6.57 -51.93 -0.34 0.38 16 20 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.05 1.06 6.47 -51.93 -0.34 0.72 16 23 H 0.07 1.38 7.15 -51.93 -0.37 1.01 16 24 H 0.04 0.79 6.81 -51.93 -0.35 0.44 16 25 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 26 H 0.06 1.14 6.39 -51.93 -0.33 0.81 16 27 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 28 H 0.06 1.33 7.70 -51.93 -0.40 0.93 16 29 H 0.03 0.69 7.57 -51.93 -0.39 0.29 16 30 H 0.11 2.60 6.49 -51.93 -0.34 2.27 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 1.02 6.59 -51.93 -0.34 0.67 16 33 H 0.11 2.87 5.40 -51.92 -0.28 2.59 16 LS Contribution 252.66 15.07 3.81 3.81 Total: -1.00 -24.99 252.66 -7.75 -32.75 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -4.97 Total: 1.22 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 0.42 Total: -20.08 kcal Atomic # 7 Polarization: -22.33 SS G_CDS: 0.42 Total: -21.91 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -2.41 Total: -10.79 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -24.99 -7.75 -32.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261163151.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.726 kcal (2) G-P(sol) polarization free energy of solvation -24.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds