Wall clock time and date at job start Mon Mar 30 2020 02:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47405 * 2 1 4 4 H 1.09003 * 109.46993 * 54.99731 * 3 2 1 5 5 C 1.53003 * 109.46897 * 295.00214 * 3 2 1 6 6 C 1.53000 * 109.47268 * 175.00110 * 3 2 1 7 7 C 1.50693 * 108.82859 * 61.47027 * 6 3 2 8 8 H 1.08001 * 120.00330 * 357.82667 * 7 6 3 9 9 C 1.37883 * 119.99928 * 177.83337 * 7 6 3 10 10 N 1.31511 * 119.99632 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99979 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47169 * 359.97438 * 11 9 7 13 13 H 1.48507 * 109.47032 * 119.99548 * 11 9 7 14 14 H 1.48501 * 109.47128 * 239.99471 * 11 9 7 15 15 C 1.52333 * 108.86598 * 179.97438 * 6 3 2 16 16 C 1.54260 * 112.47388 * 120.88872 * 15 6 3 17 17 S 1.83619 * 102.73384 * 24.48855 * 16 15 6 18 18 C 1.54259 * 108.86611 * 303.07503 * 6 3 2 19 19 H 1.09003 * 109.47273 * 59.99784 * 1 2 3 20 20 H 1.08997 * 109.47457 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47243 * 300.00224 * 1 2 3 22 22 H 1.09004 * 109.47243 * 239.99776 * 2 1 3 23 23 H 1.08997 * 109.47317 * 119.99498 * 2 1 3 24 24 H 1.08996 * 109.47358 * 59.99612 * 5 3 2 25 25 H 1.08997 * 109.46828 * 180.02562 * 5 3 2 26 26 H 1.09003 * 109.46905 * 299.99571 * 5 3 2 27 27 H 0.97005 * 119.99774 * 180.02562 * 10 9 7 28 28 H 1.09002 * 108.86808 * 241.63813 * 15 6 3 29 29 H 1.09004 * 108.87242 * 0.14373 * 15 6 3 30 30 H 1.09006 * 110.78554 * 142.72647 * 16 15 6 31 31 H 1.08996 * 110.79180 * 266.17939 * 16 15 6 32 32 H 1.09001 * 110.78735 * 332.92425 * 18 6 3 33 33 H 1.09001 * 110.78787 * 96.18979 * 18 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5649 1.4443 0.1257 7 6 4.1517 0.7275 -1.0629 8 1 3.5005 0.2873 -1.8036 9 6 5.5200 0.6337 -1.2048 10 7 6.3128 1.1701 -0.3031 11 14 6.2474 -0.2555 -2.6778 12 1 5.1507 -0.7663 -3.5388 13 1 7.0915 0.6858 -3.4569 14 1 7.0784 -1.3931 -2.2084 15 6 4.0576 2.8857 0.1236 16 6 4.8377 3.2441 1.4053 17 16 5.4447 1.6092 1.9801 18 6 3.9605 0.6841 1.4083 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5137 0.8900 24 1 0.5490 2.1252 -1.3970 25 1 1.9990 3.1540 -1.3076 26 1 2.0699 1.5875 -2.1492 27 1 7.2755 1.1044 -0.4031 28 1 4.7081 3.0347 -0.7382 29 1 3.1991 3.5517 0.0357 30 1 5.6728 3.9065 1.1774 31 1 4.1775 3.6934 2.1472 32 1 3.1633 0.7355 2.1499 33 1 4.2102 -0.3525 1.1822 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261163152.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:22 Heat of formation + Delta-G solvation = -6.104011 kcal Electronic energy + Delta-G solvation = -13580.891810 eV Core-core repulsion = 11539.629742 eV Total energy + Delta-G solvation = -2041.262069 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.83931 -33.41327 -31.36591 -28.98192 -28.22690 -25.06013 -23.51923 -22.86005 -19.85110 -18.50653 -15.69136 -15.24437 -14.61520 -14.09951 -13.76841 -13.34653 -12.73180 -12.64792 -12.12532 -11.86740 -11.58530 -11.21533 -10.91033 -10.82335 -10.60566 -10.54958 -10.37022 -10.31428 -10.00291 -9.92799 -9.37656 -9.12119 -8.63037 -8.26778 -8.15792 -6.71184 -4.62256 -3.75068 3.36994 3.46532 3.48738 3.51513 3.89691 4.57783 5.45323 5.63661 5.70492 5.81101 6.04853 6.09493 6.19479 6.23587 6.33685 6.41094 6.46023 6.55300 6.62016 6.70676 6.78074 6.83519 6.91317 7.01296 7.17530 7.21764 7.29052 7.54403 7.88125 8.07572 8.52925 9.05724 9.75881 11.20930 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.023323 B = 0.016874 C = 0.011980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.256732 B = 1658.912957 C = 2336.657578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.071 4.071 4 H 0.039 0.961 5 C -0.137 4.137 6 C 0.075 3.925 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.067 3.933 10 N -0.815 5.815 11 Si 0.862 3.138 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.288 1.288 15 C -0.090 4.090 16 C -0.059 4.059 17 S -0.247 6.247 18 C -0.038 4.038 19 H 0.050 0.950 20 H 0.042 0.958 21 H 0.043 0.957 22 H 0.069 0.931 23 H 0.055 0.945 24 H 0.031 0.969 25 H 0.046 0.954 26 H 0.064 0.936 27 H 0.249 0.751 28 H 0.076 0.924 29 H 0.032 0.968 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.525 1.498 1.639 6.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.090 4.090 4 H 0.058 0.942 5 C -0.194 4.194 6 C 0.073 3.927 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.451 5.451 11 Si 0.690 3.310 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.215 1.215 15 C -0.129 4.129 16 C -0.208 4.208 17 S -0.019 6.019 18 C -0.187 4.187 19 H 0.069 0.931 20 H 0.061 0.939 21 H 0.063 0.937 22 H 0.087 0.913 23 H 0.073 0.927 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.050 0.950 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.249 1.198 2.302 5.856 hybrid contribution -0.434 -0.196 -1.528 1.601 sum -5.683 1.002 0.774 5.822 Atomic orbital electron populations 1.21882 0.97962 1.00209 1.00919 1.21530 0.93120 0.97841 1.02394 1.21203 0.97345 0.94493 0.96006 0.94217 1.21858 0.98076 1.00311 0.99134 1.18661 0.89637 0.90983 0.93413 1.20927 0.91003 1.37314 1.07382 0.92397 1.25395 0.98113 0.95749 0.94719 1.71531 1.03168 1.42225 1.28125 0.87024 0.79594 0.79824 0.84590 1.20328 1.21542 1.21487 1.22068 0.97112 0.96935 0.96795 1.23779 1.00559 0.96914 0.99561 1.86530 1.35861 1.06008 1.73465 1.24222 0.93830 1.01819 0.98817 0.93099 0.93919 0.93744 0.91256 0.92667 0.95015 0.93546 0.91736 0.93837 0.90532 0.94959 0.90733 0.93070 0.93996 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.67 37.15 0.36 -1.91 16 2 C -0.11 -2.00 4.87 -26.73 -0.13 -2.13 16 3 C -0.07 -1.36 1.37 -90.62 -0.12 -1.49 16 4 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 5 C -0.14 -2.49 8.38 37.16 0.31 -2.18 16 6 C 0.07 1.67 0.34 -155.35 -0.05 1.62 16 7 C -0.53 -13.18 6.07 -34.44 -0.21 -13.39 16 8 H 0.06 1.47 5.59 -52.49 -0.29 1.18 16 9 C 0.07 1.75 4.82 -17.82 -0.09 1.66 16 10 N -0.81 -21.72 7.99 55.43 0.44 -21.28 16 11 Si 0.86 20.66 29.54 -169.99 -5.02 15.64 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 C -0.09 -2.00 4.45 -26.41 -0.12 -2.12 16 16 C -0.06 -1.27 7.33 37.82 0.28 -0.99 16 17 S -0.25 -5.81 19.55 -107.50 -2.10 -7.91 16 18 C -0.04 -0.86 4.78 37.82 0.18 -0.68 16 19 H 0.05 0.73 6.57 -51.93 -0.34 0.39 16 20 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.07 1.35 6.78 -51.93 -0.35 1.00 16 23 H 0.05 1.01 6.71 -51.93 -0.35 0.66 16 24 H 0.03 0.50 6.56 -51.93 -0.34 0.16 16 25 H 0.05 0.84 6.38 -51.93 -0.33 0.51 16 26 H 0.06 1.27 6.52 -51.93 -0.34 0.93 16 27 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 28 H 0.08 1.90 6.76 -51.93 -0.35 1.55 16 29 H 0.03 0.65 6.07 -51.93 -0.32 0.33 16 30 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.04 0.87 7.56 -51.93 -0.39 0.48 16 33 H 0.08 1.99 7.79 -51.93 -0.40 1.59 16 LS Contribution 252.78 15.07 3.81 3.81 Total: -1.00 -25.95 252.78 -7.52 -33.47 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -5.06 Total: -2.11 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: 0.41 Total: -21.61 kcal Atomic # 7 Polarization: -21.72 SS G_CDS: 0.44 Total: -21.28 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: -5.81 SS G_CDS: -2.10 Total: -7.91 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -25.95 -7.52 -33.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261163152.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.367 kcal (2) G-P(sol) polarization free energy of solvation -25.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds