Wall clock time and date at job start Mon Mar 30 2020 02:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47405 * 2 1 4 4 H 1.09003 * 109.46993 * 54.99731 * 3 2 1 5 5 C 1.53003 * 109.46897 * 295.00214 * 3 2 1 6 6 C 1.53000 * 109.47268 * 175.00110 * 3 2 1 7 7 C 1.50693 * 108.82859 * 61.47027 * 6 3 2 8 8 H 1.08001 * 120.00330 * 357.82667 * 7 6 3 9 9 C 1.37883 * 119.99928 * 177.83337 * 7 6 3 10 10 N 1.31511 * 119.99632 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99979 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47169 * 359.97438 * 11 9 7 13 13 H 1.48507 * 109.47032 * 119.99548 * 11 9 7 14 14 H 1.48501 * 109.47128 * 239.99471 * 11 9 7 15 15 C 1.52333 * 108.86598 * 179.97438 * 6 3 2 16 16 C 1.54260 * 112.47388 * 120.88872 * 15 6 3 17 17 S 1.83619 * 102.73384 * 24.48855 * 16 15 6 18 18 C 1.54259 * 108.86611 * 303.07503 * 6 3 2 19 19 H 1.09003 * 109.47273 * 59.99784 * 1 2 3 20 20 H 1.08997 * 109.47457 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47243 * 300.00224 * 1 2 3 22 22 H 1.09004 * 109.47243 * 239.99776 * 2 1 3 23 23 H 1.08997 * 109.47317 * 119.99498 * 2 1 3 24 24 H 1.08996 * 109.47358 * 59.99612 * 5 3 2 25 25 H 1.08997 * 109.46828 * 180.02562 * 5 3 2 26 26 H 1.09003 * 109.46905 * 299.99571 * 5 3 2 27 27 H 0.97005 * 119.99774 * 180.02562 * 10 9 7 28 28 H 1.09002 * 108.86808 * 241.63813 * 15 6 3 29 29 H 1.09004 * 108.87242 * 0.14373 * 15 6 3 30 30 H 1.09006 * 110.78554 * 142.72647 * 16 15 6 31 31 H 1.08996 * 110.79180 * 266.17939 * 16 15 6 32 32 H 1.09001 * 110.78735 * 332.92425 * 18 6 3 33 33 H 1.09001 * 110.78787 * 96.18979 * 18 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5649 1.4443 0.1257 7 6 4.1517 0.7275 -1.0629 8 1 3.5005 0.2873 -1.8036 9 6 5.5200 0.6337 -1.2048 10 7 6.3128 1.1701 -0.3031 11 14 6.2474 -0.2555 -2.6778 12 1 5.1507 -0.7663 -3.5388 13 1 7.0915 0.6858 -3.4569 14 1 7.0784 -1.3931 -2.2084 15 6 4.0576 2.8857 0.1236 16 6 4.8377 3.2441 1.4053 17 16 5.4447 1.6092 1.9801 18 6 3.9605 0.6841 1.4083 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5137 0.8900 24 1 0.5490 2.1252 -1.3970 25 1 1.9990 3.1540 -1.3076 26 1 2.0699 1.5875 -2.1492 27 1 7.2755 1.1044 -0.4031 28 1 4.7081 3.0347 -0.7382 29 1 3.1991 3.5517 0.0357 30 1 5.6728 3.9065 1.1774 31 1 4.1775 3.6934 2.1472 32 1 3.1633 0.7355 2.1499 33 1 4.2102 -0.3525 1.1822 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261163152.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:22 Heat of formation + Delta-G solvation = -18.197608 kcal Electronic energy + Delta-G solvation = -13581.416228 eV Core-core repulsion = 11539.629742 eV Total energy + Delta-G solvation = -2041.786486 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.50757 -35.03636 -33.24487 -30.50254 -29.87884 -26.97911 -24.99892 -24.55525 -21.39980 -20.30465 -17.55204 -16.97624 -16.50869 -15.72849 -15.40306 -15.03343 -14.41419 -14.15268 -13.73831 -13.47822 -13.26554 -12.82339 -12.71600 -12.47833 -12.37899 -12.17522 -12.07747 -11.94559 -11.85953 -11.50733 -10.94986 -10.80510 -10.43012 -10.24831 -9.93916 -8.63037 -6.57317 -5.74024 1.41687 1.49556 1.54096 1.71527 2.11459 2.58918 3.45705 4.21631 4.29065 4.35292 4.45905 4.47884 4.71745 4.75843 4.81366 4.87287 4.95194 5.00461 5.05139 5.16618 5.23001 5.31671 5.38056 5.47820 5.50772 5.69739 5.74654 5.85951 6.04569 6.13070 6.62006 7.07586 7.74264 9.17455 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.023323 B = 0.016874 C = 0.011980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.256732 B = 1658.912957 C = 2336.657578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.069 4.069 4 H 0.054 0.946 5 C -0.131 4.131 6 C 0.067 3.933 7 C -0.524 4.524 8 H 0.049 0.951 9 C 0.029 3.971 10 N -0.827 5.827 11 Si 0.905 3.095 12 H -0.278 1.278 13 H -0.293 1.293 14 H -0.296 1.296 15 C -0.086 4.086 16 C -0.047 4.047 17 S -0.293 6.293 18 C -0.026 4.026 19 H 0.057 0.943 20 H 0.054 0.946 21 H 0.057 0.943 22 H 0.046 0.954 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.240 0.760 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.372 2.082 1.943 8.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.089 4.089 4 H 0.073 0.927 5 C -0.188 4.188 6 C 0.066 3.934 7 C -0.563 4.563 8 H 0.067 0.933 9 C -0.176 4.176 10 N -0.464 5.464 11 Si 0.734 3.266 12 H -0.203 1.203 13 H -0.220 1.220 14 H -0.224 1.224 15 C -0.125 4.125 16 C -0.196 4.196 17 S -0.065 6.065 18 C -0.174 4.174 19 H 0.076 0.924 20 H 0.073 0.927 21 H 0.076 0.924 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.104 1.777 2.596 7.769 hybrid contribution 0.117 -0.385 -1.642 1.691 sum -6.987 1.393 0.954 7.188 Atomic orbital electron populations 1.21805 0.95113 1.01459 1.01858 1.21462 0.95608 0.96659 1.00949 1.21175 0.94951 0.95643 0.97103 0.92718 1.21784 0.99737 0.99677 0.97608 1.18730 0.91946 0.90696 0.92076 1.21139 0.90708 1.36518 1.07923 0.93264 1.25824 0.98816 0.96776 0.96165 1.71690 1.02541 1.43283 1.28922 0.86350 0.78701 0.78656 0.82878 1.20311 1.21995 1.22351 1.21948 0.97359 0.97258 0.95909 1.23820 1.00781 0.95268 0.99693 1.86671 1.37590 1.08508 1.73689 1.24126 0.93629 1.00233 0.99439 0.92442 0.92662 0.92424 0.93521 0.93367 0.92274 0.93556 0.93904 0.94784 0.93786 0.92615 0.90832 0.90079 0.91852 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.67 71.98 0.70 -3.12 16 2 C -0.11 -3.71 4.87 30.59 0.15 -3.56 16 3 C -0.07 -2.49 1.37 -10.79 -0.01 -2.50 16 4 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 5 C -0.13 -4.44 8.38 71.98 0.60 -3.84 16 6 C 0.07 2.91 0.34 -52.72 -0.02 2.90 16 7 C -0.52 -26.12 6.07 25.60 0.16 -25.96 16 8 H 0.05 2.51 5.59 -2.91 -0.02 2.49 16 9 C 0.03 1.52 4.82 84.66 0.41 1.92 16 10 N -0.83 -44.57 7.99 21.45 0.17 -44.40 16 11 Si 0.91 43.05 29.54 68.60 2.03 45.08 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 14 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 15 C -0.09 -3.67 4.45 30.80 0.14 -3.53 16 16 C -0.05 -1.93 7.33 72.41 0.53 -1.40 16 17 S -0.29 -13.61 19.55 -56.49 -1.10 -14.71 16 18 C -0.03 -1.13 4.78 72.41 0.35 -0.79 16 19 H 0.06 1.43 6.57 -2.39 -0.02 1.42 16 20 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 21 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 22 H 0.05 1.78 6.78 -2.38 -0.02 1.76 16 23 H 0.05 1.68 6.71 -2.39 -0.02 1.66 16 24 H 0.06 1.67 6.56 -2.39 -0.02 1.65 16 25 H 0.05 1.55 6.38 -2.39 -0.02 1.53 16 26 H 0.04 1.62 6.52 -2.39 -0.02 1.61 16 27 H 0.24 13.04 8.31 -92.70 -0.77 12.27 16 28 H 0.04 2.16 6.76 -2.39 -0.02 2.14 16 29 H 0.06 2.09 6.07 -2.38 -0.01 2.08 16 30 H 0.07 3.00 8.14 -2.38 -0.02 2.98 16 31 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.06 2.51 7.56 -2.39 -0.02 2.49 16 33 H 0.06 2.81 7.79 -2.39 -0.02 2.79 16 Total: -1.00 -54.32 252.78 5.16 -49.16 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: 1.08 Total: 4.74 kcal Atomic # 6 Polarization: -42.86 SS G_CDS: 2.99 Total: -39.87 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.17 Total: -44.40 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: -13.61 SS G_CDS: -1.10 Total: -14.71 kcal Total: -54.32 5.16 -49.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261163152.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.964 kcal (2) G-P(sol) polarization free energy of solvation -54.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds