Wall clock time and date at job start Mon Mar 30 2020 02:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46954 * 2 1 4 4 H 1.08997 * 109.46950 * 54.99828 * 3 2 1 5 5 C 1.53004 * 109.47039 * 294.99926 * 3 2 1 6 6 C 1.52994 * 109.47189 * 175.00123 * 3 2 1 7 7 C 1.50703 * 108.84957 * 303.96062 * 6 3 2 8 8 H 1.07998 * 119.99837 * 124.01049 * 7 6 3 9 9 C 1.37870 * 120.00410 * 304.00259 * 7 6 3 10 10 N 1.31517 * 119.99713 * 354.02650 * 9 7 6 11 11 Si 1.86802 * 120.00558 * 174.01672 * 9 7 6 12 12 H 1.48504 * 109.46720 * 90.00296 * 11 9 7 13 13 H 1.48493 * 109.47151 * 210.00189 * 11 9 7 14 14 H 1.48499 * 109.46989 * 330.00625 * 11 9 7 15 15 C 1.52942 * 108.89004 * 185.38644 * 6 3 2 16 16 C 1.55156 * 108.96126 * 209.10626 * 15 6 3 17 17 S 1.83983 * 100.91013 * 41.43618 * 16 15 6 18 18 C 1.53704 * 108.89104 * 62.40036 * 6 3 2 19 19 H 1.08999 * 109.47194 * 60.00281 * 1 2 3 20 20 H 1.08996 * 109.47127 * 299.99462 * 1 2 3 21 21 H 1.09004 * 109.46804 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47194 * 119.99719 * 2 1 3 23 23 H 1.09004 * 109.47434 * 239.99966 * 2 1 3 24 24 H 1.09001 * 109.46785 * 62.77990 * 5 3 2 25 25 H 1.08994 * 109.47072 * 182.77951 * 5 3 2 26 26 H 1.08996 * 109.47281 * 302.78337 * 5 3 2 27 27 H 0.96998 * 120.00443 * 179.97438 * 10 9 7 28 28 H 1.08999 * 109.60150 * 329.03583 * 15 6 3 29 29 H 1.08996 * 109.60230 * 89.17211 * 15 6 3 30 30 H 1.09003 * 111.12890 * 159.34998 * 16 15 6 31 31 H 1.09002 * 111.12888 * 283.52620 * 16 15 6 32 32 H 1.08996 * 110.34998 * 242.49183 * 18 6 3 33 33 H 1.09001 * 110.33963 * 4.75154 * 18 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5647 1.4445 0.1257 7 6 3.9519 0.6830 1.3673 8 1 4.6305 -0.1542 1.2976 9 6 3.4399 1.0553 2.5921 10 7 2.7087 2.1436 2.6958 11 14 3.7846 0.0141 4.1042 12 1 5.0299 0.4892 4.7589 13 1 2.6499 0.1310 5.0548 14 1 3.9481 -1.4057 3.7007 15 6 4.0487 2.8891 0.2598 16 6 5.4784 2.9989 -0.3330 17 16 5.3107 1.9588 -1.8413 18 6 4.1658 0.7342 -1.0977 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 0.5480 2.1693 -1.3736 25 1 2.0405 3.1381 -1.3288 26 1 2.0285 1.5596 -2.1511 27 1 2.3482 2.4054 3.5574 28 1 3.3756 3.5522 -0.2835 29 1 4.0663 3.1726 1.3121 30 1 5.7184 4.0303 -0.5914 31 1 6.2198 2.5841 0.3499 32 1 4.7126 -0.1564 -0.7882 33 1 3.3807 0.4706 -1.8064 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261163153.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:24 Heat of formation + Delta-G solvation = -20.696737 kcal Electronic energy + Delta-G solvation = -13589.053679 eV Core-core repulsion = 11547.158822 eV Total energy + Delta-G solvation = -2041.894857 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.88684 -33.07718 -31.87986 -29.05308 -27.94973 -25.50766 -23.47446 -22.95590 -19.76050 -17.99875 -16.20205 -15.54010 -14.78982 -14.32026 -13.94597 -13.22921 -12.93125 -12.85838 -11.87435 -11.73607 -11.60779 -11.33907 -11.04965 -10.97424 -10.73395 -10.70250 -10.47164 -10.22856 -10.02397 -9.68051 -9.45933 -9.18470 -8.70394 -8.65313 -8.27984 -6.88887 -6.07095 -4.14287 2.90932 3.23257 3.30830 3.32604 3.36590 4.35451 5.19444 5.75305 5.88971 5.94175 6.01871 6.11018 6.20710 6.26909 6.35514 6.38265 6.48171 6.53816 6.61860 6.69859 6.86571 6.96123 6.97733 7.11240 7.32215 7.47889 7.59389 7.72194 7.85756 8.07521 8.36706 8.83155 9.48481 10.93649 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.024783 B = 0.015699 C = 0.011526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.554965 B = 1783.175105 C = 2428.725231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.077 4.077 4 H 0.104 0.896 5 C -0.150 4.150 6 C 0.073 3.927 7 C -0.502 4.502 8 H 0.056 0.944 9 C 0.068 3.932 10 N -0.882 5.882 11 Si 0.884 3.116 12 H -0.282 1.282 13 H -0.286 1.286 14 H -0.274 1.274 15 C -0.105 4.105 16 C -0.047 4.047 17 S -0.377 6.377 18 C -0.036 4.036 19 H 0.043 0.957 20 H 0.048 0.952 21 H 0.036 0.964 22 H 0.073 0.927 23 H 0.037 0.963 24 H 0.035 0.965 25 H 0.048 0.952 26 H 0.040 0.960 27 H 0.261 0.739 28 H 0.045 0.955 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.150 -0.311 -3.465 3.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 C -0.096 4.096 4 H 0.122 0.878 5 C -0.207 4.207 6 C 0.072 3.928 7 C -0.540 4.540 8 H 0.074 0.926 9 C -0.133 4.133 10 N -0.520 5.520 11 Si 0.712 3.288 12 H -0.208 1.208 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.144 4.144 16 C -0.195 4.195 17 S -0.151 6.151 18 C -0.183 4.183 19 H 0.062 0.938 20 H 0.068 0.932 21 H 0.055 0.945 22 H 0.092 0.908 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.123 0.877 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.762 -0.121 -4.444 4.510 hybrid contribution -0.269 -0.682 1.947 2.080 sum -1.031 -0.803 -2.497 2.818 Atomic orbital electron populations 1.21831 0.98268 0.99625 1.00877 1.21487 0.93085 0.98448 1.01290 1.21186 0.96945 0.94721 0.96775 0.87800 1.22073 0.98977 1.00588 0.99075 1.18599 0.92243 0.91207 0.90763 1.21205 1.27439 1.14356 0.91010 0.92626 1.24854 0.95141 0.94867 0.98474 1.69812 1.34884 1.22676 1.24645 0.86705 0.77814 0.81122 0.83114 1.20811 1.21225 1.19921 1.22498 0.90394 0.98311 1.03198 1.24288 1.02896 0.98561 0.93765 1.87112 1.65459 1.36753 1.25796 1.24375 0.96908 0.97480 0.99564 0.93752 0.93245 0.94482 0.90821 0.94408 0.94573 0.93277 0.94070 0.92898 0.93641 0.87728 0.90185 0.90138 0.90753 0.90106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.67 37.16 0.36 -2.24 16 2 C -0.11 -2.11 4.87 -26.73 -0.13 -2.24 16 3 C -0.08 -1.63 1.32 -90.62 -0.12 -1.75 16 4 H 0.10 2.51 6.06 -51.93 -0.31 2.19 16 5 C -0.15 -2.86 8.37 37.16 0.31 -2.55 16 6 C 0.07 1.63 0.20 -155.33 -0.03 1.60 16 7 C -0.50 -12.30 6.36 -34.44 -0.22 -12.51 16 8 H 0.06 1.41 7.27 -52.49 -0.38 1.02 16 9 C 0.07 1.69 4.78 -17.82 -0.09 1.60 16 10 N -0.88 -22.31 9.47 55.43 0.52 -21.78 16 11 Si 0.88 19.96 29.54 -169.99 -5.02 14.94 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 15 C -0.11 -2.31 4.83 -25.62 -0.12 -2.43 16 16 C -0.05 -0.95 7.52 38.30 0.29 -0.66 16 17 S -0.38 -7.69 23.23 -107.50 -2.50 -10.18 16 18 C -0.04 -0.75 5.53 37.52 0.21 -0.54 16 19 H 0.04 0.72 6.63 -51.93 -0.34 0.37 16 20 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.07 1.63 6.77 -51.93 -0.35 1.28 16 23 H 0.04 0.72 6.81 -51.93 -0.35 0.36 16 24 H 0.04 0.63 6.70 -51.93 -0.35 0.28 16 25 H 0.05 0.95 6.13 -51.93 -0.32 0.63 16 26 H 0.04 0.76 6.25 -51.93 -0.32 0.43 16 27 H 0.26 6.46 8.31 -40.82 -0.34 6.12 16 28 H 0.05 0.98 5.80 -51.93 -0.30 0.68 16 29 H 0.10 2.56 5.91 -51.93 -0.31 2.25 16 30 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 32 H 0.07 1.59 7.29 -51.93 -0.38 1.21 16 33 H 0.08 1.61 4.85 -51.93 -0.25 1.36 16 LS Contribution 254.33 15.07 3.83 3.83 Total: -1.00 -24.33 254.33 -7.50 -31.84 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -4.80 Total: 3.07 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 0.46 Total: -21.72 kcal Atomic # 7 Polarization: -22.31 SS G_CDS: 0.52 Total: -21.78 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: -7.69 SS G_CDS: -2.50 Total: -10.18 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -24.33 -7.50 -31.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261163153.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.139 kcal (2) G-P(sol) polarization free energy of solvation -24.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds