Wall clock time and date at job start Mon Mar 30 2020 02:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46954 * 2 1 4 4 H 1.08997 * 109.46950 * 54.99828 * 3 2 1 5 5 C 1.53004 * 109.47039 * 294.99926 * 3 2 1 6 6 C 1.52994 * 109.47189 * 175.00123 * 3 2 1 7 7 C 1.50703 * 108.84957 * 303.96062 * 6 3 2 8 8 H 1.07998 * 119.99837 * 124.01049 * 7 6 3 9 9 C 1.37870 * 120.00410 * 304.00259 * 7 6 3 10 10 N 1.31517 * 119.99713 * 354.02650 * 9 7 6 11 11 Si 1.86802 * 120.00558 * 174.01672 * 9 7 6 12 12 H 1.48504 * 109.46720 * 90.00296 * 11 9 7 13 13 H 1.48493 * 109.47151 * 210.00189 * 11 9 7 14 14 H 1.48499 * 109.46989 * 330.00625 * 11 9 7 15 15 C 1.52942 * 108.89004 * 185.38644 * 6 3 2 16 16 C 1.55156 * 108.96126 * 209.10626 * 15 6 3 17 17 S 1.83983 * 100.91013 * 41.43618 * 16 15 6 18 18 C 1.53704 * 108.89104 * 62.40036 * 6 3 2 19 19 H 1.08999 * 109.47194 * 60.00281 * 1 2 3 20 20 H 1.08996 * 109.47127 * 299.99462 * 1 2 3 21 21 H 1.09004 * 109.46804 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47194 * 119.99719 * 2 1 3 23 23 H 1.09004 * 109.47434 * 239.99966 * 2 1 3 24 24 H 1.09001 * 109.46785 * 62.77990 * 5 3 2 25 25 H 1.08994 * 109.47072 * 182.77951 * 5 3 2 26 26 H 1.08996 * 109.47281 * 302.78337 * 5 3 2 27 27 H 0.96998 * 120.00443 * 179.97438 * 10 9 7 28 28 H 1.08999 * 109.60150 * 329.03583 * 15 6 3 29 29 H 1.08996 * 109.60230 * 89.17211 * 15 6 3 30 30 H 1.09003 * 111.12890 * 159.34998 * 16 15 6 31 31 H 1.09002 * 111.12888 * 283.52620 * 16 15 6 32 32 H 1.08996 * 110.34998 * 242.49183 * 18 6 3 33 33 H 1.09001 * 110.33963 * 4.75154 * 18 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5647 1.4445 0.1257 7 6 3.9519 0.6830 1.3673 8 1 4.6305 -0.1542 1.2976 9 6 3.4399 1.0553 2.5921 10 7 2.7087 2.1436 2.6958 11 14 3.7846 0.0141 4.1042 12 1 5.0299 0.4892 4.7589 13 1 2.6499 0.1310 5.0548 14 1 3.9481 -1.4057 3.7007 15 6 4.0487 2.8891 0.2598 16 6 5.4784 2.9989 -0.3330 17 16 5.3107 1.9588 -1.8413 18 6 4.1658 0.7342 -1.0977 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 0.5480 2.1693 -1.3736 25 1 2.0405 3.1381 -1.3288 26 1 2.0285 1.5596 -2.1511 27 1 2.3482 2.4054 3.5574 28 1 3.3756 3.5522 -0.2835 29 1 4.0663 3.1726 1.3121 30 1 5.7184 4.0303 -0.5914 31 1 6.2198 2.5841 0.3499 32 1 4.7126 -0.1564 -0.7882 33 1 3.3807 0.4706 -1.8064 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261163153.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:23 Heat of formation + Delta-G solvation = -31.165150 kcal Electronic energy + Delta-G solvation = -13589.507623 eV Core-core repulsion = 11547.158822 eV Total energy + Delta-G solvation = -2042.348801 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.59522 -34.73944 -33.72526 -30.65677 -29.58341 -27.31156 -25.15817 -24.57191 -21.42792 -19.77496 -17.99806 -17.17079 -16.67795 -16.00045 -15.57694 -14.90348 -14.63162 -14.42449 -13.54003 -13.37504 -13.21171 -12.96462 -12.73845 -12.69329 -12.47586 -12.36311 -12.10151 -11.94352 -11.80427 -11.35580 -11.11423 -10.89398 -10.46413 -10.36374 -10.13576 -8.52146 -7.97886 -6.08604 1.26965 1.40710 1.46569 1.52137 1.65764 2.47754 3.26897 4.13048 4.27625 4.33977 4.50337 4.53031 4.62322 4.66303 4.74678 4.84408 4.91178 4.94526 5.02388 5.22626 5.25655 5.30450 5.41770 5.49741 5.60974 5.72162 5.84339 5.93924 6.11542 6.29174 6.51149 6.92409 7.55051 9.00463 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.024783 B = 0.015699 C = 0.011526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.554965 B = 1783.175105 C = 2428.725231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C -0.074 4.074 4 H 0.074 0.926 5 C -0.141 4.141 6 C 0.069 3.931 7 C -0.508 4.508 8 H 0.042 0.958 9 C 0.038 3.962 10 N -0.894 5.894 11 Si 0.927 3.073 12 H -0.284 1.284 13 H -0.288 1.288 14 H -0.276 1.276 15 C -0.101 4.101 16 C -0.045 4.045 17 S -0.365 6.365 18 C -0.033 4.033 19 H 0.059 0.941 20 H 0.036 0.964 21 H 0.055 0.945 22 H 0.045 0.955 23 H 0.047 0.953 24 H 0.052 0.948 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.258 0.742 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.405 -0.443 -4.480 4.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.141 4.141 3 C -0.094 4.094 4 H 0.092 0.908 5 C -0.198 4.198 6 C 0.067 3.933 7 C -0.547 4.547 8 H 0.060 0.940 9 C -0.162 4.162 10 N -0.533 5.533 11 Si 0.755 3.245 12 H -0.210 1.210 13 H -0.214 1.214 14 H -0.201 1.201 15 C -0.140 4.140 16 C -0.192 4.192 17 S -0.139 6.139 18 C -0.181 4.181 19 H 0.078 0.922 20 H 0.056 0.944 21 H 0.074 0.926 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.123 0.877 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.012 -0.256 -5.461 5.560 hybrid contribution -0.167 -0.642 2.261 2.356 sum -1.179 -0.898 -3.201 3.527 Atomic orbital electron populations 1.21761 0.96205 1.00959 1.01048 1.21411 0.94942 0.97359 1.00355 1.21062 0.96042 0.95372 0.96894 0.90777 1.21962 1.00062 0.99981 0.97803 1.18627 0.93163 0.91086 0.90385 1.21348 1.27053 1.14069 0.92243 0.93980 1.25268 0.95331 0.95544 1.00100 1.69919 1.35393 1.23329 1.24669 0.86036 0.77345 0.80013 0.81093 1.20980 1.21358 1.20058 1.22365 0.91753 0.98183 1.01685 1.24283 1.01436 1.00007 0.93520 1.87058 1.65225 1.36293 1.25371 1.24265 0.97290 0.97217 0.99327 0.92154 0.94436 0.92628 0.93620 0.93395 0.92947 0.93808 0.93291 0.93232 0.93432 0.90374 0.87737 0.90695 0.91640 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.69 9.67 71.98 0.70 -4.00 16 2 C -0.10 -4.00 4.87 30.60 0.15 -3.86 16 3 C -0.07 -3.08 1.32 -10.79 -0.01 -3.09 16 4 H 0.07 3.58 6.06 -2.39 -0.01 3.56 16 5 C -0.14 -5.07 8.37 71.98 0.60 -4.47 16 6 C 0.07 3.01 0.20 -52.71 -0.01 3.00 16 7 C -0.51 -25.02 6.36 25.60 0.16 -24.86 16 8 H 0.04 2.14 7.27 -2.91 -0.02 2.12 16 9 C 0.04 1.87 4.78 84.65 0.40 2.28 16 10 N -0.89 -45.70 9.47 21.45 0.20 -45.50 16 11 Si 0.93 41.15 29.54 68.60 2.03 43.18 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 14 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 15 C -0.10 -4.36 4.83 31.31 0.15 -4.21 16 16 C -0.04 -1.72 7.52 72.72 0.55 -1.18 16 17 S -0.37 -14.16 23.23 -56.49 -1.31 -15.47 16 18 C -0.03 -1.35 5.53 72.22 0.40 -0.95 16 19 H 0.06 1.78 6.63 -2.39 -0.02 1.77 16 20 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 21 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 22 H 0.05 2.01 6.77 -2.39 -0.02 2.00 16 23 H 0.05 1.74 6.81 -2.39 -0.02 1.72 16 24 H 0.05 1.69 6.70 -2.39 -0.02 1.68 16 25 H 0.04 1.60 6.13 -2.39 -0.01 1.59 16 26 H 0.05 1.67 6.25 -2.39 -0.01 1.65 16 27 H 0.26 12.92 8.31 -92.71 -0.77 12.15 16 28 H 0.05 2.01 5.80 -2.39 -0.01 2.00 16 29 H 0.08 3.84 5.91 -2.39 -0.01 3.82 16 30 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 31 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.06 2.74 7.29 -2.39 -0.02 2.72 16 33 H 0.09 3.49 4.85 -2.39 -0.01 3.48 16 Total: -1.00 -50.10 254.33 5.09 -45.01 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 1.09 Total: 14.11 kcal Atomic # 6 Polarization: -44.42 SS G_CDS: 3.09 Total: -41.33 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.20 Total: -45.50 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 16 Polarization: -14.16 SS G_CDS: -1.31 Total: -15.47 kcal Total: -50.10 5.09 -45.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261163153.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.842 kcal (2) G-P(sol) polarization free energy of solvation -50.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds