Wall clock time and date at job start Mon Mar 30 2020 02:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46872 * 2 1 4 4 H 1.08997 * 109.46958 * 304.99481 * 3 2 1 5 5 C 1.52994 * 109.47420 * 64.99469 * 3 2 1 6 6 C 1.53005 * 109.46902 * 184.99579 * 3 2 1 7 7 C 1.50693 * 108.82779 * 59.29676 * 6 3 2 8 8 H 1.08003 * 120.00393 * 266.20682 * 7 6 3 9 9 C 1.37880 * 120.00231 * 86.48620 * 7 6 3 10 10 N 1.31516 * 120.00348 * 164.11165 * 9 7 6 11 11 Si 1.86807 * 119.99637 * 344.11275 * 9 7 6 12 12 H 1.48503 * 109.46929 * 93.84281 * 11 9 7 13 13 H 1.48502 * 109.47086 * 213.83878 * 11 9 7 14 14 H 1.48493 * 109.47044 * 333.83885 * 11 9 7 15 15 C 1.52331 * 108.74922 * 177.75941 * 6 3 2 16 16 C 1.54267 * 112.58528 * 120.74242 * 15 6 3 17 17 S 1.83956 * 102.57872 * 24.52718 * 16 15 6 18 18 C 1.54256 * 108.86834 * 300.76630 * 6 3 2 19 19 H 1.09003 * 109.47144 * 60.00850 * 1 2 3 20 20 H 1.09005 * 109.46960 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47738 * 300.00326 * 1 2 3 22 22 H 1.08997 * 109.47738 * 239.99674 * 2 1 3 23 23 H 1.09004 * 109.46649 * 119.98972 * 2 1 3 24 24 H 1.09005 * 109.47289 * 179.97438 * 5 3 2 25 25 H 1.09006 * 109.47372 * 300.00134 * 5 3 2 26 26 H 1.09002 * 109.47358 * 60.00437 * 5 3 2 27 27 H 0.97004 * 119.99930 * 179.97438 * 10 9 7 28 28 H 1.09000 * 108.86907 * 241.55436 * 15 6 3 29 29 H 1.08997 * 108.87803 * 359.92259 * 15 6 3 30 30 H 1.08998 * 110.78486 * 266.25216 * 16 15 6 31 31 H 1.09002 * 110.78562 * 142.80026 * 16 15 6 32 32 H 1.08997 * 110.78654 * 333.06694 * 18 6 3 33 33 H 1.08996 * 110.78661 * 96.33649 * 18 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6351 2.1266 1.3072 6 6 3.5648 1.4444 -0.1256 7 6 3.9479 0.7526 -1.4084 8 1 4.1832 -0.3015 -1.4041 9 6 4.0038 1.4665 -2.5866 10 7 4.6263 0.9647 -3.6308 11 14 3.1951 3.1467 -2.6998 12 1 4.1978 4.1999 -2.3988 13 1 2.6621 3.3482 -4.0712 14 1 2.0826 3.2276 -1.7196 15 6 4.0499 2.8874 -0.1802 16 6 5.0266 3.2277 0.9643 17 16 5.7209 1.5812 1.4015 18 6 4.1641 0.6622 1.0612 19 1 -0.3633 0.5137 -0.8901 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5137 0.8901 24 1 1.9988 3.1542 1.3074 25 1 0.5487 2.1253 1.3968 26 1 2.0697 1.5877 2.1491 27 1 4.6652 1.4669 -4.4598 28 1 4.5517 3.0548 -1.1332 29 1 3.1881 3.5517 -0.1173 30 1 4.4943 3.6604 1.8113 31 1 5.8120 3.8986 0.6160 32 1 3.4980 0.6971 1.9233 33 1 4.3743 -0.3692 0.7781 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261163154.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:25 Heat of formation + Delta-G solvation = -1.282057 kcal Electronic energy + Delta-G solvation = -13636.270755 eV Core-core repulsion = 11595.217782 eV Total energy + Delta-G solvation = -2041.052973 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.39946 -33.50066 -31.99289 -29.36497 -28.31512 -26.34655 -23.66088 -22.91633 -20.25504 -18.47832 -16.34337 -15.85195 -15.15885 -14.87246 -13.78787 -13.51571 -13.21318 -12.95713 -12.52847 -12.19922 -12.01034 -11.71946 -11.41571 -11.14302 -11.05203 -10.82505 -10.61903 -10.12165 -10.09058 -9.79547 -9.50764 -9.16735 -8.90858 -8.87573 -8.35747 -6.89592 -6.12591 -4.05672 2.70502 3.13025 3.21101 3.27982 3.37093 4.32365 5.06787 5.40427 5.53893 5.60909 5.62501 5.78675 5.86359 5.92099 6.05704 6.10824 6.15107 6.22246 6.27747 6.30623 6.46285 6.55753 6.59437 6.68014 6.72004 7.04424 7.11016 7.29586 7.31969 7.73521 8.45674 8.91378 9.50389 10.99425 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.020693 B = 0.019841 C = 0.013598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.799633 B = 1410.857922 C = 2058.583878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.092 4.092 4 H 0.074 0.926 5 C -0.155 4.155 6 C 0.051 3.949 7 C -0.498 4.498 8 H 0.076 0.924 9 C 0.073 3.927 10 N -0.888 5.888 11 Si 0.872 3.128 12 H -0.286 1.286 13 H -0.303 1.303 14 H -0.246 1.246 15 C -0.145 4.145 16 C -0.054 4.054 17 S -0.328 6.328 18 C -0.031 4.031 19 H 0.048 0.952 20 H 0.043 0.957 21 H 0.046 0.954 22 H 0.080 0.920 23 H 0.048 0.952 24 H 0.045 0.955 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.263 0.737 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.470 2.949 8.126 10.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.112 4.112 4 H 0.092 0.908 5 C -0.212 4.212 6 C 0.049 3.951 7 C -0.536 4.536 8 H 0.094 0.906 9 C -0.129 4.129 10 N -0.525 5.525 11 Si 0.703 3.297 12 H -0.214 1.214 13 H -0.231 1.231 14 H -0.172 1.172 15 C -0.183 4.183 16 C -0.202 4.202 17 S -0.101 6.101 18 C -0.179 4.179 19 H 0.067 0.933 20 H 0.062 0.938 21 H 0.065 0.935 22 H 0.099 0.901 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.279 2.601 8.317 9.709 hybrid contribution -1.417 1.362 -0.658 2.073 sum -5.697 3.963 7.660 10.336 Atomic orbital electron populations 1.21853 0.97787 1.00321 1.00896 1.21484 0.93522 0.97298 1.02402 1.21766 0.97495 0.95641 0.96318 0.90762 1.22108 0.99920 1.00195 0.99001 1.18957 0.91224 0.89992 0.94933 1.20802 1.46072 0.97242 0.89453 0.90563 1.25032 0.94371 0.97487 0.96053 1.69961 1.39977 1.39224 1.03311 0.87478 0.80582 0.85182 0.76457 1.21420 1.23137 1.17155 1.22889 0.97752 0.98752 0.98899 1.23965 1.00471 0.95443 1.00310 1.87394 1.25680 1.07953 1.89115 1.24422 0.91911 1.01519 1.00050 0.93310 0.93775 0.93544 0.90112 0.93341 0.93564 0.93693 0.93055 0.92693 0.89763 0.92163 0.90626 0.89279 0.90993 0.88726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.67 37.16 0.36 -1.93 16 2 C -0.11 -1.95 4.88 -26.73 -0.13 -2.08 16 3 C -0.09 -1.76 1.30 -90.62 -0.12 -1.88 16 4 H 0.07 1.55 4.80 -51.93 -0.25 1.30 16 5 C -0.16 -2.51 8.45 37.15 0.31 -2.19 16 6 C 0.05 1.09 0.18 -155.35 -0.03 1.06 16 7 C -0.50 -12.92 7.07 -34.44 -0.24 -13.16 16 8 H 0.08 2.18 7.74 -52.48 -0.41 1.78 16 9 C 0.07 1.99 5.07 -17.82 -0.09 1.90 16 10 N -0.89 -26.32 13.96 55.43 0.77 -25.54 16 11 Si 0.87 20.67 22.88 -169.99 -3.89 16.78 16 12 H -0.29 -6.73 6.66 56.52 0.38 -6.36 16 13 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 14 H -0.25 -5.33 4.25 56.52 0.24 -5.09 16 15 C -0.14 -3.04 2.99 -26.41 -0.08 -3.11 16 16 C -0.05 -0.99 7.46 37.82 0.28 -0.71 16 17 S -0.33 -6.65 23.27 -107.50 -2.50 -9.16 16 18 C -0.03 -0.62 5.11 37.81 0.19 -0.42 16 19 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 20 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.05 0.64 6.56 -51.93 -0.34 0.30 16 22 H 0.08 1.64 6.98 -51.93 -0.36 1.28 16 23 H 0.05 0.81 7.19 -51.93 -0.37 0.44 16 24 H 0.05 0.73 6.52 -51.93 -0.34 0.39 16 25 H 0.04 0.65 6.57 -51.93 -0.34 0.31 16 26 H 0.05 0.79 6.02 -51.93 -0.31 0.47 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.08 2.00 3.41 -51.93 -0.18 1.83 16 29 H 0.06 1.18 4.75 -51.93 -0.25 0.93 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.07 1.26 5.45 -51.93 -0.28 0.98 16 33 H 0.09 1.95 7.59 -51.93 -0.39 1.55 16 LS Contribution 244.75 15.07 3.69 3.69 Total: -1.00 -27.90 244.75 -6.31 -34.21 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -4.84 Total: 2.57 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 0.46 Total: -22.54 kcal Atomic # 7 Polarization: -26.32 SS G_CDS: 0.77 Total: -25.54 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -3.89 Total: 16.78 kcal Atomic # 16 Polarization: -6.65 SS G_CDS: -2.50 Total: -9.16 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -27.90 -6.31 -34.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261163154.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.927 kcal (2) G-P(sol) polarization free energy of solvation -27.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds