Wall clock time and date at job start Mon Mar 30 2020 02:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46872 * 2 1 4 4 H 1.08997 * 109.46958 * 304.99481 * 3 2 1 5 5 C 1.52994 * 109.47420 * 64.99469 * 3 2 1 6 6 C 1.53005 * 109.46902 * 184.99579 * 3 2 1 7 7 C 1.50693 * 108.82779 * 59.29676 * 6 3 2 8 8 H 1.08003 * 120.00393 * 266.20682 * 7 6 3 9 9 C 1.37880 * 120.00231 * 86.48620 * 7 6 3 10 10 N 1.31516 * 120.00348 * 164.11165 * 9 7 6 11 11 Si 1.86807 * 119.99637 * 344.11275 * 9 7 6 12 12 H 1.48503 * 109.46929 * 93.84281 * 11 9 7 13 13 H 1.48502 * 109.47086 * 213.83878 * 11 9 7 14 14 H 1.48493 * 109.47044 * 333.83885 * 11 9 7 15 15 C 1.52331 * 108.74922 * 177.75941 * 6 3 2 16 16 C 1.54267 * 112.58528 * 120.74242 * 15 6 3 17 17 S 1.83956 * 102.57872 * 24.52718 * 16 15 6 18 18 C 1.54256 * 108.86834 * 300.76630 * 6 3 2 19 19 H 1.09003 * 109.47144 * 60.00850 * 1 2 3 20 20 H 1.09005 * 109.46960 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47738 * 300.00326 * 1 2 3 22 22 H 1.08997 * 109.47738 * 239.99674 * 2 1 3 23 23 H 1.09004 * 109.46649 * 119.98972 * 2 1 3 24 24 H 1.09005 * 109.47289 * 179.97438 * 5 3 2 25 25 H 1.09006 * 109.47372 * 300.00134 * 5 3 2 26 26 H 1.09002 * 109.47358 * 60.00437 * 5 3 2 27 27 H 0.97004 * 119.99930 * 179.97438 * 10 9 7 28 28 H 1.09000 * 108.86907 * 241.55436 * 15 6 3 29 29 H 1.08997 * 108.87803 * 359.92259 * 15 6 3 30 30 H 1.08998 * 110.78486 * 266.25216 * 16 15 6 31 31 H 1.09002 * 110.78562 * 142.80026 * 16 15 6 32 32 H 1.08997 * 110.78654 * 333.06694 * 18 6 3 33 33 H 1.08996 * 110.78661 * 96.33649 * 18 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6351 2.1266 1.3072 6 6 3.5648 1.4444 -0.1256 7 6 3.9479 0.7526 -1.4084 8 1 4.1832 -0.3015 -1.4041 9 6 4.0038 1.4665 -2.5866 10 7 4.6263 0.9647 -3.6308 11 14 3.1951 3.1467 -2.6998 12 1 4.1978 4.1999 -2.3988 13 1 2.6621 3.3482 -4.0712 14 1 2.0826 3.2276 -1.7196 15 6 4.0499 2.8874 -0.1802 16 6 5.0266 3.2277 0.9643 17 16 5.7209 1.5812 1.4015 18 6 4.1641 0.6622 1.0612 19 1 -0.3633 0.5137 -0.8901 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5137 0.8901 24 1 1.9988 3.1542 1.3074 25 1 0.5487 2.1253 1.3968 26 1 2.0697 1.5877 2.1491 27 1 4.6652 1.4669 -4.4598 28 1 4.5517 3.0548 -1.1332 29 1 3.1881 3.5517 -0.1173 30 1 4.4943 3.6604 1.8113 31 1 5.8120 3.8986 0.6160 32 1 3.4980 0.6971 1.9233 33 1 4.3743 -0.3692 0.7781 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261163154.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:25 Heat of formation + Delta-G solvation = -18.172811 kcal Electronic energy + Delta-G solvation = -13637.003193 eV Core-core repulsion = 11595.217782 eV Total energy + Delta-G solvation = -2041.785411 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.01758 -35.06774 -33.94356 -30.86500 -29.74814 -28.12961 -25.07172 -24.65373 -21.79370 -20.20369 -18.19519 -17.42760 -17.00325 -16.39255 -15.37948 -15.00786 -14.90343 -14.57754 -14.08532 -13.87149 -13.51565 -13.08850 -12.84807 -12.68757 -12.43588 -12.39168 -12.31740 -11.88619 -11.65986 -11.36437 -11.20928 -10.93436 -10.59580 -10.52281 -10.28727 -8.49890 -8.24076 -6.19677 1.16732 1.29717 1.37125 1.46484 1.58646 2.34271 3.06156 3.83718 4.04849 4.11776 4.19124 4.40518 4.46353 4.51487 4.59489 4.69629 4.74187 4.78575 4.87946 4.90456 4.96197 5.15451 5.20290 5.30765 5.39798 5.52125 5.57046 5.69792 5.81367 5.89616 6.35336 6.79294 7.39568 8.91931 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.020693 B = 0.019841 C = 0.013598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.799633 B = 1410.857922 C = 2058.583878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.091 4.091 4 H 0.058 0.942 5 C -0.150 4.150 6 C 0.048 3.952 7 C -0.486 4.486 8 H 0.029 0.971 9 C 0.012 3.988 10 N -0.948 5.948 11 Si 0.929 3.071 12 H -0.280 1.280 13 H -0.319 1.319 14 H -0.206 1.206 15 C -0.150 4.150 16 C -0.041 4.041 17 S -0.367 6.367 18 C -0.021 4.021 19 H 0.043 0.957 20 H 0.055 0.945 21 H 0.069 0.931 22 H 0.040 0.960 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.260 0.740 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.451 4.959 10.751 13.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C -0.111 4.111 4 H 0.076 0.924 5 C -0.207 4.207 6 C 0.046 3.954 7 C -0.524 4.524 8 H 0.047 0.953 9 C -0.185 4.185 10 N -0.588 5.588 11 Si 0.758 3.242 12 H -0.207 1.207 13 H -0.248 1.248 14 H -0.129 1.129 15 C -0.188 4.188 16 C -0.188 4.188 17 S -0.141 6.141 18 C -0.169 4.169 19 H 0.062 0.938 20 H 0.074 0.926 21 H 0.088 0.912 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.132 0.868 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.272 4.611 10.985 13.464 hybrid contribution -0.740 0.603 -1.464 1.747 sum -7.012 5.214 9.521 12.923 Atomic orbital electron populations 1.21801 0.95225 1.01529 1.01740 1.21427 0.95793 0.96458 1.01011 1.21648 0.95003 0.96488 0.97929 0.92371 1.22050 1.01590 1.00267 0.96775 1.18969 0.93386 0.90250 0.92781 1.21029 1.44200 0.95347 0.91854 0.95296 1.25868 0.95086 1.01862 0.95653 1.70134 1.42950 1.41516 1.04189 0.86558 0.80748 0.80422 0.76446 1.20709 1.24841 1.12929 1.22826 0.98986 0.98450 0.98505 1.24072 1.00258 0.93901 1.00588 1.87578 1.27036 1.10374 1.89071 1.24342 0.91956 1.00109 1.00486 0.93832 0.92575 0.91209 0.94102 0.92279 0.92621 0.91433 0.91945 0.93132 0.92836 0.89782 0.86779 0.88270 0.87796 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 9.67 71.98 0.70 -3.26 16 2 C -0.11 -3.72 4.88 30.59 0.15 -3.57 16 3 C -0.09 -3.20 1.30 -10.79 -0.01 -3.21 16 4 H 0.06 2.24 4.80 -2.39 -0.01 2.23 16 5 C -0.15 -4.00 8.45 71.98 0.61 -3.39 16 6 C 0.05 1.99 0.18 -52.72 -0.01 1.98 16 7 C -0.49 -26.02 7.07 25.60 0.18 -25.84 16 8 H 0.03 1.77 7.74 -2.91 -0.02 1.75 16 9 C 0.01 0.65 5.07 84.66 0.43 1.08 16 10 N -0.95 -59.15 13.96 21.45 0.30 -58.85 16 11 Si 0.93 42.64 22.88 68.60 1.57 44.21 16 12 H -0.28 -12.46 6.66 99.48 0.66 -11.80 16 13 H -0.32 -15.34 7.11 99.48 0.71 -14.63 16 14 H -0.21 -8.06 4.25 99.48 0.42 -7.63 16 15 C -0.15 -5.81 2.99 30.80 0.09 -5.72 16 16 C -0.04 -1.34 7.46 72.41 0.54 -0.80 16 17 S -0.37 -14.28 23.27 -56.49 -1.31 -15.59 16 18 C -0.02 -0.81 5.11 72.41 0.37 -0.44 16 19 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 20 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 21 H 0.07 1.58 6.56 -2.39 -0.02 1.57 16 22 H 0.04 1.69 6.98 -2.39 -0.02 1.68 16 23 H 0.06 1.85 7.19 -2.38 -0.02 1.84 16 24 H 0.05 1.40 6.52 -2.38 -0.02 1.39 16 25 H 0.07 1.54 6.57 -2.38 -0.02 1.52 16 26 H 0.06 1.54 6.02 -2.39 -0.01 1.53 16 27 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 28 H 0.05 2.45 3.41 -2.39 -0.01 2.44 16 29 H 0.08 2.87 4.75 -2.39 -0.01 2.86 16 30 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.10 3.28 5.45 -2.39 -0.01 3.27 16 33 H 0.07 3.11 7.59 -2.39 -0.02 3.09 16 Total: -1.00 -63.44 244.75 4.36 -59.08 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.76 Total: 14.33 kcal Atomic # 6 Polarization: -46.22 SS G_CDS: 3.04 Total: -43.18 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: 0.30 Total: -58.85 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.57 Total: 44.21 kcal Atomic # 16 Polarization: -14.28 SS G_CDS: -1.31 Total: -15.59 kcal Total: -63.44 4.36 -59.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261163154.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.907 kcal (2) G-P(sol) polarization free energy of solvation -63.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds