Wall clock time and date at job start Mon Mar 30 2020 02:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38167 * 120.16985 * 2 1 4 4 C 1.38298 * 120.11508 * 179.97438 * 3 2 1 5 5 C 1.38388 * 120.36888 * 0.06799 * 4 3 2 6 6 C 1.37915 * 119.99617 * 359.95399 * 5 4 3 7 7 C 1.39015 * 120.17051 * 179.97438 * 2 1 3 8 8 C 1.48537 * 120.83558 * 359.90098 * 7 2 1 9 9 C 1.40935 * 120.52304 * 18.84434 * 8 7 2 10 10 H 1.07999 * 120.00085 * 50.51428 * 9 8 7 11 11 C 1.40026 * 119.99858 * 230.24272 * 9 8 7 12 12 N 1.30783 * 120.00069 * 8.52666 * 11 9 8 13 13 Si 1.86808 * 120.00045 * 188.52910 * 11 9 8 14 14 H 1.48497 * 109.47077 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47080 * 119.99888 * 13 11 9 16 16 H 1.48499 * 109.46994 * 240.00107 * 13 11 9 17 17 C 1.36301 * 118.95451 * 199.11148 * 8 7 2 18 18 C 1.50407 * 120.46236 * 0.14620 * 17 8 7 19 19 C 1.50526 * 120.57058 * 179.80778 * 6 5 4 20 20 H 1.09009 * 109.47018 * 260.16850 * 1 2 3 21 21 H 1.08997 * 109.47654 * 20.16333 * 1 2 3 22 22 H 1.09000 * 109.47226 * 140.16941 * 1 2 3 23 23 H 1.08006 * 119.94198 * 359.97438 * 3 2 1 24 24 H 1.07999 * 119.81421 * 180.02562 * 4 3 2 25 25 H 1.08001 * 120.00621 * 179.97438 * 5 4 3 26 26 H 0.97000 * 120.00241 * 180.02562 * 12 11 9 27 27 H 1.07996 * 119.76762 * 180.35207 * 17 8 7 28 28 H 1.08995 * 109.31273 * 203.93979 * 18 17 8 29 29 H 1.08996 * 108.99612 * 84.61085 * 18 17 8 30 30 H 1.08998 * 109.35270 * 265.04892 * 19 6 5 31 31 H 1.08991 * 109.35794 * 24.76991 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2013 1.1945 0.0000 4 6 3.5843 1.1932 0.0005 5 6 4.2828 -0.0015 -0.0003 6 6 3.5997 -1.1996 -0.0008 7 6 2.2056 -1.2018 0.0005 8 6 1.4856 -2.5010 0.0033 9 6 0.1331 -2.5707 -0.3867 10 1 -0.1841 -2.1248 -1.3178 11 6 -0.7984 -3.2231 0.4303 12 7 -0.4530 -3.6208 1.6273 13 14 -2.5345 -3.5254 -0.1897 14 1 -2.6705 -2.9825 -1.5652 15 1 -2.8080 -4.9849 -0.2037 16 1 -3.5053 -2.8484 0.7073 17 6 2.1520 -3.6239 0.3943 18 6 3.5928 -3.5465 0.8191 19 6 4.3464 -2.5066 -0.0061 20 1 -0.3633 -0.1755 1.0127 21 1 -0.3634 0.9646 -0.3542 22 1 -0.3634 -0.7892 -0.6582 23 1 1.6631 2.1309 -0.0004 24 1 4.1221 2.1297 0.0010 25 1 5.3628 0.0043 -0.0003 26 1 -1.0982 -4.0730 2.1931 27 1 1.6429 -4.5763 0.3959 28 1 4.0615 -4.5211 0.6833 29 1 3.6377 -3.2701 1.8725 30 1 4.4452 -2.8620 -1.0318 31 1 5.3377 -2.3580 0.4219 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261259484.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:57 Heat of formation + Delta-G solvation = 25.410828 kcal Electronic energy + Delta-G solvation = -14016.983890 eV Core-core repulsion = 11841.644456 eV Total energy + Delta-G solvation = -2175.339434 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.08526 -35.10168 -33.94167 -31.79026 -29.07559 -28.82548 -26.56855 -24.51121 -22.04901 -21.46877 -19.79888 -17.82743 -16.40529 -15.16060 -14.76928 -14.46237 -14.13445 -13.29777 -13.08440 -12.54986 -12.30034 -11.87457 -11.76848 -11.51705 -11.21592 -11.15227 -10.86002 -10.82040 -10.49869 -10.31977 -10.09584 -9.45249 -9.14960 -8.76698 -8.35184 -7.74132 -6.42913 -6.38784 -4.12985 2.04247 2.21124 3.10911 3.22810 3.26152 3.92080 4.19939 4.74145 5.31653 5.50616 5.58111 5.74252 5.86199 6.04472 6.14404 6.23631 6.33466 6.41160 6.51415 6.68275 6.82446 6.90146 6.95963 7.02549 7.10857 7.22378 7.33943 7.43111 7.49029 7.67831 7.84724 8.14151 8.34917 8.88122 9.15628 9.17539 10.66436 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.032793 B = 0.012118 C = 0.009367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.627911 B = 2310.130719 C = 2988.459762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.059 4.059 3 C -0.140 4.140 4 C -0.141 4.141 5 C -0.138 4.138 6 C -0.088 4.088 7 C -0.024 4.024 8 C 0.080 3.920 9 C -0.483 4.483 10 H 0.075 0.925 11 C 0.079 3.921 12 N -0.830 5.830 13 Si 0.890 3.110 14 H -0.264 1.264 15 H -0.278 1.278 16 H -0.279 1.279 17 C -0.250 4.250 18 C -0.064 4.064 19 C -0.071 4.071 20 H 0.061 0.939 21 H 0.029 0.971 22 H 0.124 0.876 23 H 0.108 0.892 24 H 0.106 0.894 25 H 0.108 0.892 26 H 0.270 0.730 27 H 0.097 0.903 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.066 0.934 31 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.170 4.203 -2.118 6.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.059 4.059 3 C -0.159 4.159 4 C -0.159 4.159 5 C -0.156 4.156 6 C -0.088 4.088 7 C -0.024 4.024 8 C 0.079 3.921 9 C -0.517 4.517 10 H 0.093 0.907 11 C -0.133 4.133 12 N -0.460 5.460 13 Si 0.716 3.284 14 H -0.188 1.188 15 H -0.204 1.204 16 H -0.205 1.205 17 C -0.271 4.271 18 C -0.101 4.101 19 C -0.108 4.108 20 H 0.080 0.920 21 H 0.048 0.952 22 H 0.141 0.859 23 H 0.126 0.874 24 H 0.125 0.875 25 H 0.126 0.874 26 H 0.080 0.920 27 H 0.115 0.885 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.087 4.102 -1.914 6.099 hybrid contribution -0.838 -0.023 0.066 0.841 sum 3.249 4.079 -1.848 5.533 Atomic orbital electron populations 1.21517 0.91154 1.01839 1.04354 1.19964 0.96647 0.91731 0.97532 1.20930 0.94016 0.97186 1.03719 1.20836 0.94239 0.97041 1.03804 1.20724 0.98565 0.92288 1.03991 1.19997 0.93846 0.94475 1.00497 1.19625 0.91722 0.95316 0.95764 1.17471 0.92184 0.87364 0.95096 1.18778 0.92405 1.34424 1.06063 0.90727 1.25506 0.99387 0.94119 0.94250 1.69742 1.35771 1.33214 1.07236 0.86558 0.83427 0.78581 0.79792 1.18836 1.20351 1.20466 1.22949 0.92336 0.97595 1.14212 1.20061 0.95819 0.96269 0.97960 1.20310 0.96954 0.92989 1.00528 0.91997 0.95152 0.85879 0.87375 0.87544 0.87430 0.91961 0.88535 0.93253 0.93773 0.91557 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.81 36.00 0.32 -2.54 16 2 C -0.06 -1.31 5.89 -104.36 -0.61 -1.92 16 3 C -0.14 -2.70 9.67 -39.59 -0.38 -3.09 16 4 C -0.14 -2.52 10.03 -39.50 -0.40 -2.92 16 5 C -0.14 -2.56 9.70 -39.64 -0.38 -2.94 16 6 C -0.09 -1.87 5.66 -104.39 -0.59 -2.46 16 7 C -0.02 -0.57 5.75 -104.92 -0.60 -1.18 16 8 C 0.08 2.08 5.18 -105.33 -0.55 1.53 16 9 C -0.48 -12.62 5.60 -37.89 -0.21 -12.84 16 10 H 0.08 1.91 6.39 -52.49 -0.34 1.57 16 11 C 0.08 2.04 5.26 -17.33 -0.09 1.95 16 12 N -0.83 -22.58 12.31 55.55 0.68 -21.89 16 13 Si 0.89 19.52 29.57 -169.99 -5.03 14.49 16 14 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 15 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 17 C -0.25 -6.33 8.81 -35.15 -0.31 -6.63 16 18 C -0.06 -1.36 6.05 -28.20 -0.17 -1.53 16 19 C -0.07 -1.36 5.92 -28.14 -0.17 -1.52 16 20 H 0.06 1.40 8.14 -51.92 -0.42 0.98 16 21 H 0.03 0.55 8.01 -51.93 -0.42 0.13 16 22 H 0.12 2.82 3.83 -51.93 -0.20 2.62 16 23 H 0.11 1.80 8.04 -52.48 -0.42 1.38 16 24 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 25 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 26 H 0.27 6.86 8.30 -40.82 -0.34 6.52 16 27 H 0.10 2.60 7.72 -52.49 -0.41 2.19 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 0.93 8.06 -51.93 -0.42 0.51 16 LS Contribution 254.56 15.07 3.84 3.84 Total: -1.00 -27.61 254.56 -8.52 -36.13 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -3.87 Total: 3.52 kcal Atomic # 6 Polarization: -31.94 SS G_CDS: -4.15 Total: -36.09 kcal Atomic # 7 Polarization: -22.58 SS G_CDS: 0.68 Total: -21.89 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -27.61 -8.52 -36.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259484.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.545 kcal (2) G-P(sol) polarization free energy of solvation -27.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds