Wall clock time and date at job start Mon Mar 30 2020 02:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38167 * 120.16985 * 2 1 4 4 C 1.38298 * 120.11508 * 179.97438 * 3 2 1 5 5 C 1.38388 * 120.36888 * 0.06799 * 4 3 2 6 6 C 1.37915 * 119.99617 * 359.95399 * 5 4 3 7 7 C 1.39015 * 120.17051 * 179.97438 * 2 1 3 8 8 C 1.48537 * 120.83558 * 359.90098 * 7 2 1 9 9 C 1.40935 * 120.52304 * 18.84434 * 8 7 2 10 10 H 1.07999 * 120.00085 * 50.51428 * 9 8 7 11 11 C 1.40026 * 119.99858 * 230.24272 * 9 8 7 12 12 N 1.30783 * 120.00069 * 8.52666 * 11 9 8 13 13 Si 1.86808 * 120.00045 * 188.52910 * 11 9 8 14 14 H 1.48497 * 109.47077 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47080 * 119.99888 * 13 11 9 16 16 H 1.48499 * 109.46994 * 240.00107 * 13 11 9 17 17 C 1.36301 * 118.95451 * 199.11148 * 8 7 2 18 18 C 1.50407 * 120.46236 * 0.14620 * 17 8 7 19 19 C 1.50526 * 120.57058 * 179.80778 * 6 5 4 20 20 H 1.09009 * 109.47018 * 260.16850 * 1 2 3 21 21 H 1.08997 * 109.47654 * 20.16333 * 1 2 3 22 22 H 1.09000 * 109.47226 * 140.16941 * 1 2 3 23 23 H 1.08006 * 119.94198 * 359.97438 * 3 2 1 24 24 H 1.07999 * 119.81421 * 180.02562 * 4 3 2 25 25 H 1.08001 * 120.00621 * 179.97438 * 5 4 3 26 26 H 0.97000 * 120.00241 * 180.02562 * 12 11 9 27 27 H 1.07996 * 119.76762 * 180.35207 * 17 8 7 28 28 H 1.08995 * 109.31273 * 203.93979 * 18 17 8 29 29 H 1.08996 * 108.99612 * 84.61085 * 18 17 8 30 30 H 1.08998 * 109.35270 * 265.04892 * 19 6 5 31 31 H 1.08991 * 109.35794 * 24.76991 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2013 1.1945 0.0000 4 6 3.5843 1.1932 0.0005 5 6 4.2828 -0.0015 -0.0003 6 6 3.5997 -1.1996 -0.0008 7 6 2.2056 -1.2018 0.0005 8 6 1.4856 -2.5010 0.0033 9 6 0.1331 -2.5707 -0.3867 10 1 -0.1841 -2.1248 -1.3178 11 6 -0.7984 -3.2231 0.4303 12 7 -0.4530 -3.6208 1.6273 13 14 -2.5345 -3.5254 -0.1897 14 1 -2.6705 -2.9825 -1.5652 15 1 -2.8080 -4.9849 -0.2037 16 1 -3.5053 -2.8484 0.7073 17 6 2.1520 -3.6239 0.3943 18 6 3.5928 -3.5465 0.8191 19 6 4.3464 -2.5066 -0.0061 20 1 -0.3633 -0.1755 1.0127 21 1 -0.3634 0.9646 -0.3542 22 1 -0.3634 -0.7892 -0.6582 23 1 1.6631 2.1309 -0.0004 24 1 4.1221 2.1297 0.0010 25 1 5.3628 0.0043 -0.0003 26 1 -1.0982 -4.0730 2.1931 27 1 1.6429 -4.5763 0.3959 28 1 4.0615 -4.5211 0.6833 29 1 3.6377 -3.2701 1.8725 30 1 4.4452 -2.8620 -1.0318 31 1 5.3377 -2.3580 0.4219 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261259484.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:57 Heat of formation + Delta-G solvation = 12.088111 kcal Electronic energy + Delta-G solvation = -14017.561606 eV Core-core repulsion = 11841.644456 eV Total energy + Delta-G solvation = -2175.917150 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.67308 -36.80494 -35.67832 -33.55735 -30.71257 -30.54555 -28.31623 -26.23447 -23.77355 -23.09765 -21.41072 -19.63391 -18.17109 -16.99238 -16.33532 -16.07860 -15.73697 -14.99702 -14.72264 -14.21353 -14.04707 -13.46873 -13.42709 -13.28007 -12.93746 -12.80579 -12.55924 -12.46674 -12.17131 -11.98992 -11.76859 -11.17487 -10.93137 -10.67894 -10.05841 -9.27059 -8.36344 -8.25527 -6.15222 0.43605 0.67186 1.34220 1.39960 1.51652 2.13191 2.34741 2.99223 3.44953 4.02578 4.13419 4.29656 4.40149 4.50390 4.60526 4.67762 4.76654 4.86274 4.97926 5.07830 5.11123 5.25195 5.30146 5.36782 5.43313 5.47661 5.69318 5.73161 5.84972 6.03330 6.05278 6.32545 6.47368 6.94786 7.18210 7.22995 8.71133 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.032793 B = 0.012118 C = 0.009367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.627911 B = 2310.130719 C = 2988.459762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.128 4.128 5 C -0.134 4.134 6 C -0.103 4.103 7 C -0.069 4.069 8 C 0.060 3.940 9 C -0.496 4.496 10 H 0.072 0.928 11 C 0.036 3.964 12 N -0.870 5.870 13 Si 0.956 3.044 14 H -0.256 1.256 15 H -0.276 1.276 16 H -0.273 1.273 17 C -0.273 4.273 18 C -0.059 4.059 19 C -0.066 4.066 20 H 0.037 0.963 21 H 0.060 0.940 22 H 0.103 0.897 23 H 0.136 0.864 24 H 0.150 0.850 25 H 0.146 0.854 26 H 0.272 0.728 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.033 0.967 30 H 0.071 0.929 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.609 6.230 -2.736 8.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.085 4.085 3 C -0.160 4.160 4 C -0.146 4.146 5 C -0.152 4.152 6 C -0.103 4.103 7 C -0.069 4.069 8 C 0.059 3.941 9 C -0.529 4.529 10 H 0.089 0.911 11 C -0.172 4.172 12 N -0.501 5.501 13 Si 0.779 3.221 14 H -0.180 1.180 15 H -0.202 1.202 16 H -0.198 1.198 17 C -0.293 4.293 18 C -0.097 4.097 19 C -0.103 4.103 20 H 0.056 0.944 21 H 0.079 0.921 22 H 0.121 0.879 23 H 0.154 0.846 24 H 0.168 0.832 25 H 0.164 0.836 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.534 6.133 -2.544 8.644 hybrid contribution -1.216 -0.566 0.239 1.363 sum 4.318 5.567 -2.306 7.413 Atomic orbital electron populations 1.21331 0.91596 1.02749 1.02432 1.20178 0.96835 0.92655 0.98842 1.21264 0.95108 0.96986 1.02689 1.21368 0.93775 0.98681 1.00791 1.21160 1.00510 0.91326 1.02198 1.20324 0.93027 0.96525 1.00469 1.19707 0.93382 0.94722 0.99110 1.17867 0.92583 0.88988 0.94678 1.18999 0.93202 1.34628 1.06083 0.91082 1.26246 1.03183 0.93573 0.94169 1.69843 1.37236 1.34552 1.08500 0.85553 0.78663 0.78336 0.79556 1.17966 1.20175 1.19843 1.23025 0.94714 0.96227 1.15383 1.20028 0.93701 0.98389 0.97535 1.20327 0.97926 0.91420 1.00628 0.94394 0.92078 0.87887 0.84598 0.83215 0.83646 0.91826 0.91810 0.91256 0.94896 0.91016 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.43 8.81 71.23 0.63 -4.80 16 2 C -0.09 -3.74 5.89 -19.70 -0.12 -3.86 16 3 C -0.14 -5.06 9.67 22.27 0.22 -4.84 16 4 C -0.13 -3.98 10.03 22.32 0.22 -3.76 16 5 C -0.13 -4.42 9.70 22.23 0.22 -4.21 16 6 C -0.10 -4.21 5.66 -19.71 -0.11 -4.32 16 7 C -0.07 -3.32 5.75 -20.06 -0.12 -3.43 16 8 C 0.06 3.23 5.18 -20.32 -0.11 3.13 16 9 C -0.50 -27.03 5.60 23.36 0.13 -26.90 16 10 H 0.07 3.81 6.39 -2.91 -0.02 3.79 16 11 C 0.04 1.94 5.26 85.28 0.45 2.39 16 12 N -0.87 -49.57 12.31 21.84 0.27 -49.30 16 13 Si 0.96 41.29 29.57 68.60 2.03 43.31 16 14 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 15 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 16 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 17 C -0.27 -14.42 8.81 25.14 0.22 -14.20 16 18 C -0.06 -2.53 6.05 29.64 0.18 -2.35 16 19 C -0.07 -2.41 5.92 29.68 0.18 -2.24 16 20 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 21 H 0.06 2.17 8.01 -2.39 -0.02 2.15 16 22 H 0.10 4.87 3.83 -2.39 -0.01 4.86 16 23 H 0.14 3.97 8.04 -2.91 -0.02 3.95 16 24 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 25 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 26 H 0.27 14.44 8.30 -92.71 -0.77 13.67 16 27 H 0.06 3.67 7.72 -2.91 -0.02 3.65 16 28 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.09 2.71 8.06 -2.39 -0.02 2.69 16 Total: -1.00 -62.49 254.56 5.40 -57.09 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 1.12 Total: 18.31 kcal Atomic # 6 Polarization: -71.40 SS G_CDS: 1.99 Total: -69.41 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 0.27 Total: -49.30 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Total: -62.49 5.40 -57.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259484.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.175 kcal (2) G-P(sol) polarization free energy of solvation -62.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds