Wall clock time and date at job start Mon Mar 30 2020 02:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38391 * 120.00118 * 2 1 4 4 C 1.38294 * 120.37021 * 179.97438 * 3 2 1 5 5 C 1.38163 * 120.11161 * 0.03303 * 4 3 2 6 6 C 1.39008 * 119.66365 * 359.97438 * 5 4 3 7 7 C 1.37912 * 120.00045 * 179.97438 * 2 1 3 8 8 C 1.50517 * 120.57632 * 359.90247 * 7 2 1 9 9 C 1.52668 * 110.18011 * 144.85501 * 8 7 2 10 10 C 1.50413 * 110.81430 * 50.99931 * 9 8 7 11 11 C 1.36303 * 120.44792 * 324.36024 * 10 9 8 12 12 C 1.40939 * 120.52038 * 180.42758 * 11 10 9 13 13 H 1.08008 * 119.99301 * 205.65618 * 12 11 10 14 14 C 1.40020 * 120.00468 * 25.65383 * 12 11 10 15 15 N 1.30791 * 120.00034 * 17.21875 * 14 12 11 16 16 Si 1.86803 * 120.00004 * 197.50049 * 14 12 11 17 17 H 1.48500 * 109.46949 * 269.72007 * 16 14 12 18 18 H 1.48495 * 109.47292 * 29.71958 * 16 14 12 19 19 H 1.48499 * 109.47152 * 149.72485 * 16 14 12 20 20 H 1.09004 * 109.46949 * 270.02449 * 1 2 3 21 21 H 1.09004 * 109.46997 * 30.01967 * 1 2 3 22 22 H 1.08997 * 109.47540 * 150.01905 * 1 2 3 23 23 H 1.07998 * 119.81692 * 359.97009 * 3 2 1 24 24 H 1.08007 * 119.94601 * 180.02562 * 4 3 2 25 25 H 1.08002 * 120.17046 * 179.97438 * 5 4 3 26 26 H 1.09008 * 109.35544 * 265.06625 * 8 7 2 27 27 H 1.08996 * 109.35959 * 24.78295 * 8 7 2 28 28 H 1.08990 * 109.23971 * 171.48936 * 9 8 7 29 29 H 1.09004 * 109.22946 * 290.90952 * 9 8 7 30 30 H 1.07998 * 119.77162 * 144.12731 * 10 9 8 31 31 H 0.97001 * 120.00007 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1985 0.0000 4 6 3.5819 1.2074 0.0005 5 6 4.2828 0.0167 0.0004 6 6 3.5908 -1.1889 0.0002 7 6 2.1966 -1.1944 0.0005 8 6 1.4572 -2.5054 0.0033 9 6 2.2178 -3.5408 -0.8213 10 6 3.6584 -3.6106 -0.3944 11 6 4.3180 -2.4840 -0.0023 12 6 5.6704 -2.5462 0.3894 13 1 6.0712 -1.8056 1.0658 14 6 6.4944 -3.5679 -0.0981 15 7 6.1325 -4.2532 -1.1517 16 14 8.1068 -3.9575 0.7609 17 1 9.1951 -3.1423 0.1641 18 1 7.9867 -3.6404 2.2066 19 1 8.4204 -5.3995 0.5947 20 1 -0.3633 0.0004 1.0277 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3634 -0.8901 -0.5135 23 1 1.6561 2.1321 -0.0005 24 1 4.1150 2.1467 0.0009 25 1 5.3628 0.0226 0.0004 26 1 1.3583 -2.8622 1.0286 27 1 0.4659 -2.3620 -0.4265 28 1 1.7543 -4.5180 -0.6868 29 1 2.1730 -3.2641 -1.8747 30 1 4.1725 -4.5604 -0.3950 31 1 6.7035 -4.9608 -1.4896 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261261486.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:58 Heat of formation + Delta-G solvation = 15.327647 kcal Electronic energy + Delta-G solvation = -13770.164362 eV Core-core repulsion = 11594.387689 eV Total energy + Delta-G solvation = -2175.776673 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.12388 -35.20058 -33.57742 -32.32066 -29.29699 -28.67656 -26.11587 -25.12122 -22.18167 -21.41194 -19.77360 -17.79620 -16.00953 -15.42013 -14.87352 -14.74968 -14.16272 -13.32631 -13.15154 -12.67856 -12.42194 -11.91769 -11.85437 -11.72540 -11.27437 -11.23655 -11.05849 -10.85772 -10.62043 -10.29230 -10.20787 -9.28651 -9.16081 -9.01975 -8.35643 -7.81421 -6.67617 -6.46072 -4.08821 2.04388 2.15632 3.08736 3.19722 3.25227 3.95174 4.14261 4.69157 5.38642 5.44411 5.50981 5.64638 5.74674 5.86367 5.92122 6.07150 6.18577 6.25470 6.39196 6.42331 6.50927 6.76435 6.91619 6.96969 7.06349 7.23723 7.27202 7.34929 7.48948 7.57311 7.83922 8.20325 8.44666 8.95083 9.17328 9.31364 10.52781 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.039468 B = 0.009716 C = 0.008139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.259296 B = 2881.261192 C = 3439.591552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.130 4.130 5 C -0.115 4.115 6 C -0.008 4.008 7 C -0.087 4.087 8 C -0.075 4.075 9 C -0.056 4.056 10 C -0.297 4.297 11 C 0.059 3.941 12 C -0.463 4.463 13 H 0.066 0.934 14 C 0.074 3.926 15 N -0.804 5.804 16 Si 0.897 3.103 17 H -0.274 1.274 18 H -0.265 1.265 19 H -0.280 1.280 20 H 0.062 0.938 21 H 0.056 0.944 22 H 0.066 0.934 23 H 0.107 0.893 24 H 0.109 0.891 25 H 0.123 0.877 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.037 0.963 30 H 0.113 0.887 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.147 5.152 1.565 8.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.098 4.098 3 C -0.165 4.165 4 C -0.148 4.148 5 C -0.133 4.133 6 C -0.008 4.008 7 C -0.087 4.087 8 C -0.112 4.112 9 C -0.093 4.093 10 C -0.320 4.320 11 C 0.058 3.942 12 C -0.494 4.494 13 H 0.085 0.915 14 C -0.140 4.140 15 N -0.432 5.432 16 Si 0.722 3.278 17 H -0.200 1.200 18 H -0.189 1.189 19 H -0.205 1.205 20 H 0.080 0.920 21 H 0.075 0.925 22 H 0.085 0.915 23 H 0.125 0.875 24 H 0.127 0.873 25 H 0.141 0.859 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.131 0.869 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.074 4.979 1.410 7.979 hybrid contribution 0.955 -0.125 0.253 0.996 sum -5.118 4.853 1.663 7.247 Atomic orbital electron populations 1.20766 0.92318 1.02006 1.01529 1.19541 0.95143 0.92866 1.02271 1.20726 0.94186 0.96499 1.05122 1.20976 0.94075 0.97581 1.02203 1.21229 1.00171 0.91469 1.00454 1.19618 0.91968 0.95276 0.93950 1.19839 0.93647 0.94114 1.01145 1.20427 0.97193 0.92974 1.00607 1.19984 0.96171 0.95774 0.97379 1.22819 0.92640 0.98201 1.18301 1.17504 0.92303 0.87770 0.96623 1.19105 0.94261 1.10496 1.25537 0.91541 1.25656 0.99115 0.95601 0.93656 1.69839 1.37184 1.18311 1.17870 0.86516 0.82258 0.78047 0.80980 1.19995 1.18875 1.20477 0.91952 0.92458 0.91506 0.87509 0.87256 0.85862 0.91687 0.92255 0.93717 0.94462 0.86927 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 9.61 36.01 0.35 -1.21 16 2 C -0.10 -1.81 5.87 -104.68 -0.61 -2.42 16 3 C -0.15 -2.59 9.69 -39.50 -0.38 -2.97 16 4 C -0.13 -2.42 10.04 -39.59 -0.40 -2.82 16 5 C -0.12 -2.52 9.41 -39.32 -0.37 -2.89 16 6 C -0.01 -0.19 5.75 -104.93 -0.60 -0.80 16 7 C -0.09 -1.87 5.66 -104.39 -0.59 -2.46 16 8 C -0.08 -1.48 5.59 -28.14 -0.16 -1.64 16 9 C -0.06 -1.24 6.05 -28.19 -0.17 -1.41 16 10 C -0.30 -7.87 8.80 -35.14 -0.31 -8.17 16 11 C 0.06 1.60 5.56 -105.32 -0.59 1.02 16 12 C -0.46 -12.69 8.23 -37.89 -0.31 -13.00 16 13 H 0.07 1.77 7.49 -52.48 -0.39 1.37 16 14 C 0.07 1.96 5.12 -17.33 -0.09 1.87 16 15 N -0.80 -22.05 11.03 55.55 0.61 -21.44 16 16 Si 0.90 19.81 29.59 -169.99 -5.03 14.78 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 20 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 21 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 22 H 0.07 0.91 5.94 -51.93 -0.31 0.61 16 23 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 24 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 25 H 0.12 2.70 7.20 -52.49 -0.38 2.32 16 26 H 0.06 1.26 8.14 -51.92 -0.42 0.83 16 27 H 0.06 1.00 5.80 -51.93 -0.30 0.69 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.11 3.21 6.15 -52.49 -0.32 2.88 16 31 H 0.27 6.87 8.30 -40.82 -0.34 6.53 16 LS Contribution 254.98 15.07 3.84 3.84 Total: -1.00 -28.56 254.98 -8.61 -37.17 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -3.79 Total: 2.56 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: -4.24 Total: -36.91 kcal Atomic # 7 Polarization: -22.05 SS G_CDS: 0.61 Total: -21.44 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.78 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.56 -8.61 -37.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261261486.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.495 kcal (2) G-P(sol) polarization free energy of solvation -28.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds