Wall clock time and date at job start Mon Mar 30 2020 02:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38391 * 120.00118 * 2 1 4 4 C 1.38294 * 120.37021 * 179.97438 * 3 2 1 5 5 C 1.38163 * 120.11161 * 0.03303 * 4 3 2 6 6 C 1.39008 * 119.66365 * 359.97438 * 5 4 3 7 7 C 1.37912 * 120.00045 * 179.97438 * 2 1 3 8 8 C 1.50517 * 120.57632 * 359.90247 * 7 2 1 9 9 C 1.52668 * 110.18011 * 144.85501 * 8 7 2 10 10 C 1.50413 * 110.81430 * 50.99931 * 9 8 7 11 11 C 1.36303 * 120.44792 * 324.36024 * 10 9 8 12 12 C 1.40939 * 120.52038 * 180.42758 * 11 10 9 13 13 H 1.08008 * 119.99301 * 205.65618 * 12 11 10 14 14 C 1.40020 * 120.00468 * 25.65383 * 12 11 10 15 15 N 1.30791 * 120.00034 * 17.21875 * 14 12 11 16 16 Si 1.86803 * 120.00004 * 197.50049 * 14 12 11 17 17 H 1.48500 * 109.46949 * 269.72007 * 16 14 12 18 18 H 1.48495 * 109.47292 * 29.71958 * 16 14 12 19 19 H 1.48499 * 109.47152 * 149.72485 * 16 14 12 20 20 H 1.09004 * 109.46949 * 270.02449 * 1 2 3 21 21 H 1.09004 * 109.46997 * 30.01967 * 1 2 3 22 22 H 1.08997 * 109.47540 * 150.01905 * 1 2 3 23 23 H 1.07998 * 119.81692 * 359.97009 * 3 2 1 24 24 H 1.08007 * 119.94601 * 180.02562 * 4 3 2 25 25 H 1.08002 * 120.17046 * 179.97438 * 5 4 3 26 26 H 1.09008 * 109.35544 * 265.06625 * 8 7 2 27 27 H 1.08996 * 109.35959 * 24.78295 * 8 7 2 28 28 H 1.08990 * 109.23971 * 171.48936 * 9 8 7 29 29 H 1.09004 * 109.22946 * 290.90952 * 9 8 7 30 30 H 1.07998 * 119.77162 * 144.12731 * 10 9 8 31 31 H 0.97001 * 120.00007 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1985 0.0000 4 6 3.5819 1.2074 0.0005 5 6 4.2828 0.0167 0.0004 6 6 3.5908 -1.1889 0.0002 7 6 2.1966 -1.1944 0.0005 8 6 1.4572 -2.5054 0.0033 9 6 2.2178 -3.5408 -0.8213 10 6 3.6584 -3.6106 -0.3944 11 6 4.3180 -2.4840 -0.0023 12 6 5.6704 -2.5462 0.3894 13 1 6.0712 -1.8056 1.0658 14 6 6.4944 -3.5679 -0.0981 15 7 6.1325 -4.2532 -1.1517 16 14 8.1068 -3.9575 0.7609 17 1 9.1951 -3.1423 0.1641 18 1 7.9867 -3.6404 2.2066 19 1 8.4204 -5.3995 0.5947 20 1 -0.3633 0.0004 1.0277 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3634 -0.8901 -0.5135 23 1 1.6561 2.1321 -0.0005 24 1 4.1150 2.1467 0.0009 25 1 5.3628 0.0226 0.0004 26 1 1.3583 -2.8622 1.0286 27 1 0.4659 -2.3620 -0.4265 28 1 1.7543 -4.5180 -0.6868 29 1 2.1730 -3.2641 -1.8747 30 1 4.1725 -4.5604 -0.3950 31 1 6.7035 -4.9608 -1.4896 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261261486.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:58 Heat of formation + Delta-G solvation = 0.961186 kcal Electronic energy + Delta-G solvation = -13770.787339 eV Core-core repulsion = 11594.387689 eV Total energy + Delta-G solvation = -2176.399650 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.69006 -36.97475 -35.31300 -33.96573 -30.97343 -30.39989 -27.46032 -27.03174 -23.88745 -23.07003 -21.38677 -19.63878 -17.78241 -17.23453 -16.54076 -16.32844 -15.74526 -14.95132 -14.68608 -14.12731 -14.01637 -13.54229 -13.49857 -13.14963 -12.97913 -12.84731 -12.75295 -12.50937 -12.28357 -11.94565 -11.90065 -11.05087 -11.03369 -10.87411 -10.12807 -9.30379 -8.53562 -8.47642 -6.18840 0.42814 0.63052 1.30988 1.36230 1.49256 2.11077 2.26825 2.95561 3.54526 4.00366 4.11689 4.23758 4.29784 4.45748 4.57526 4.62227 4.78002 4.89537 4.92891 4.98646 5.03540 5.15856 5.28585 5.33339 5.38657 5.48233 5.56068 5.73074 5.80701 5.96048 6.07643 6.29967 6.44401 6.90961 7.13849 7.32177 8.52890 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.039468 B = 0.009716 C = 0.008139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.259296 B = 2881.261192 C = 3439.591552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.096 4.096 3 C -0.137 4.137 4 C -0.126 4.126 5 C -0.138 4.138 6 C -0.053 4.053 7 C -0.107 4.107 8 C -0.069 4.069 9 C -0.052 4.052 10 C -0.324 4.324 11 C 0.039 3.961 12 C -0.496 4.496 13 H 0.061 0.939 14 C 0.028 3.972 15 N -0.838 5.838 16 Si 0.971 3.029 17 H -0.264 1.264 18 H -0.263 1.263 19 H -0.270 1.270 20 H 0.079 0.921 21 H 0.083 0.917 22 H 0.072 0.928 23 H 0.151 0.849 24 H 0.142 0.858 25 H 0.106 0.894 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.028 0.972 30 H 0.081 0.919 31 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.756 7.042 2.025 10.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.096 4.096 3 C -0.154 4.154 4 C -0.144 4.144 5 C -0.156 4.156 6 C -0.053 4.053 7 C -0.107 4.107 8 C -0.105 4.105 9 C -0.089 4.089 10 C -0.346 4.346 11 C 0.038 3.962 12 C -0.528 4.528 13 H 0.079 0.921 14 C -0.183 4.183 15 N -0.466 5.466 16 Si 0.793 3.207 17 H -0.189 1.189 18 H -0.187 1.187 19 H -0.195 1.195 20 H 0.098 0.902 21 H 0.102 0.898 22 H 0.090 0.910 23 H 0.168 0.832 24 H 0.160 0.840 25 H 0.124 0.876 26 H 0.084 0.916 27 H 0.114 0.886 28 H 0.079 0.921 29 H 0.046 0.954 30 H 0.099 0.901 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.697 6.873 1.867 10.486 hybrid contribution 1.411 -0.616 0.093 1.543 sum -6.285 6.257 1.960 9.083 Atomic orbital electron populations 1.20850 0.88806 1.03623 1.03108 1.20058 0.97662 0.91850 1.00043 1.21269 0.93808 0.98052 1.02317 1.21320 0.95038 0.97376 1.00687 1.21254 0.99690 0.92545 1.02126 1.19675 0.93656 0.94538 0.97474 1.20104 0.92727 0.96103 1.01727 1.20408 0.98212 0.91529 1.00365 1.19939 0.94072 0.97770 0.97144 1.22886 0.95077 0.96939 1.19661 1.17942 0.92676 0.89686 0.95926 1.19399 0.95367 1.11494 1.26500 0.92072 1.26552 1.02885 0.94907 0.93948 1.69934 1.38814 1.18840 1.19022 0.85385 0.77611 0.78184 0.79548 1.18891 1.18686 1.19492 0.90200 0.89825 0.90977 0.83165 0.83993 0.87600 0.91612 0.88569 0.92118 0.95350 0.90127 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.51 9.61 71.24 0.68 -1.83 16 2 C -0.10 -3.21 5.87 -19.90 -0.12 -3.32 16 3 C -0.14 -4.24 9.69 22.32 0.22 -4.02 16 4 C -0.13 -4.41 10.04 22.26 0.22 -4.19 16 5 C -0.14 -6.16 9.41 22.44 0.21 -5.95 16 6 C -0.05 -2.64 5.75 -20.06 -0.12 -2.76 16 7 C -0.11 -4.46 5.66 -19.72 -0.11 -4.57 16 8 C -0.07 -2.63 5.59 29.68 0.17 -2.46 16 9 C -0.05 -2.35 6.05 29.65 0.18 -2.17 16 10 C -0.32 -18.04 8.80 25.14 0.22 -17.82 16 11 C 0.04 2.22 5.56 -20.32 -0.11 2.11 16 12 C -0.50 -28.75 8.23 23.36 0.19 -28.56 16 13 H 0.06 3.45 7.49 -2.91 -0.02 3.43 16 14 C 0.03 1.57 5.12 85.28 0.44 2.00 16 15 N -0.84 -48.12 11.03 21.84 0.24 -47.88 16 16 Si 0.97 41.97 29.59 68.60 2.03 44.00 16 17 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 18 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 19 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 20 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 21 H 0.08 1.55 8.09 -2.39 -0.02 1.53 16 22 H 0.07 1.62 5.94 -2.39 -0.01 1.61 16 23 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 24 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 25 H 0.11 4.91 7.20 -2.91 -0.02 4.88 16 26 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 27 H 0.10 2.93 5.80 -2.39 -0.01 2.92 16 28 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.08 4.91 6.15 -2.91 -0.02 4.89 16 31 H 0.28 14.58 8.30 -92.71 -0.77 13.82 16 Total: -1.00 -65.84 254.98 5.46 -60.38 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 1.12 Total: 17.04 kcal Atomic # 6 Polarization: -75.61 SS G_CDS: 2.07 Total: -73.54 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.24 Total: -47.88 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -65.84 5.46 -60.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261261486.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.339 kcal (2) G-P(sol) polarization free energy of solvation -65.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds