Wall clock time and date at job start Mon Mar 30 2020 03:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.52996 * 109.47127 * 180.02562 * 3 2 1 5 5 C 1.50696 * 109.46902 * 60.00206 * 3 2 1 6 6 H 1.08005 * 119.99564 * 240.00216 * 5 3 2 7 7 C 1.37872 * 120.00148 * 59.99877 * 5 3 2 8 8 N 1.31518 * 120.00246 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99951 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47201 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47042 * 120.00270 * 9 7 5 12 12 H 1.48505 * 109.47123 * 240.00177 * 9 7 5 13 13 C 1.53005 * 109.46845 * 300.00036 * 3 2 1 14 14 H 1.08999 * 109.52102 * 60.12687 * 13 3 2 15 15 C 1.53172 * 109.52464 * 299.99894 * 13 3 2 16 16 C 1.53175 * 109.03753 * 183.11559 * 15 13 3 17 17 C 1.53090 * 109.16122 * 56.97939 * 16 15 13 18 18 O 1.42901 * 109.41776 * 302.39111 * 17 16 15 19 19 C 1.42902 * 114.09694 * 61.16016 * 18 17 16 20 20 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 22 22 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 23 23 H 1.09003 * 109.47385 * 59.99763 * 4 3 2 24 24 H 1.09001 * 109.47105 * 180.02562 * 4 3 2 25 25 H 1.09004 * 109.46775 * 299.99875 * 4 3 2 26 26 H 0.96993 * 119.99829 * 180.02562 * 8 7 5 27 27 H 1.08999 * 109.54251 * 302.98170 * 15 13 3 28 28 H 1.09002 * 109.54436 * 63.24883 * 15 13 3 29 29 H 1.09001 * 109.52616 * 176.88664 * 16 15 13 30 30 H 1.09001 * 109.52530 * 297.07614 * 16 15 13 31 31 H 1.08994 * 109.48454 * 62.37832 * 17 16 15 32 32 H 1.09007 * 109.47806 * 182.40999 * 17 16 15 33 33 H 1.08997 * 109.48203 * 178.86232 * 19 18 17 34 34 H 1.08995 * 109.48249 * 58.82492 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 1.5657 2.0532 1.2305 6 1 1.0160 2.9776 1.1313 7 6 1.8605 1.5573 2.4827 8 7 2.5302 0.4319 2.6034 9 14 1.3100 2.4847 4.0079 10 1 0.5796 3.7129 3.6038 11 1 0.4137 1.6198 4.8165 12 1 2.4986 2.8583 4.8160 13 6 1.5588 2.0647 -1.2493 14 1 0.4725 2.1532 -1.2490 15 6 2.0102 1.3055 -2.5008 16 6 1.6213 2.1135 -3.7426 17 6 2.2473 3.5076 -3.6514 18 8 1.8107 4.1467 -2.4502 19 6 2.1872 3.4608 -1.2544 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 3.8568 0.6437 -0.8908 24 1 3.9789 2.1803 -0.0002 25 1 3.8574 0.6435 0.8892 26 1 2.7373 0.0829 3.4843 27 1 3.0917 1.1725 -2.4762 28 1 1.5223 0.3313 -2.5321 29 1 1.9876 1.6074 -4.6359 30 1 0.5363 2.2040 -3.7933 31 1 3.3335 3.4185 -3.6417 32 1 1.9388 4.1015 -4.5119 33 1 1.8355 4.0208 -0.3880 34 1 3.2727 3.3709 -1.2132 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261272092.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:52 Heat of formation + Delta-G solvation = -100.963908 kcal Electronic energy + Delta-G solvation = -15831.358162 eV Core-core repulsion = 13343.229788 eV Total energy + Delta-G solvation = -2488.128373 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.17346 -36.76858 -33.02289 -32.62296 -31.23307 -28.07979 -25.74395 -24.73885 -24.18000 -23.27143 -20.59738 -18.37378 -16.60629 -15.77132 -15.45134 -14.69111 -14.50955 -14.27827 -13.61350 -13.36998 -13.17935 -12.94578 -12.06657 -11.94300 -11.53191 -11.21073 -11.01001 -10.88737 -10.72232 -10.40556 -10.28053 -10.19813 -10.18250 -9.76790 -9.48059 -8.89109 -8.55561 -8.49342 -7.79523 -5.97358 -4.16787 3.25733 3.35053 3.38507 4.37476 4.43584 5.16400 5.28566 5.35841 5.43374 5.55884 5.72063 5.86360 5.98123 6.07584 6.22699 6.31346 6.41668 6.46054 6.60859 6.64259 6.69957 6.87991 6.94436 7.00821 7.03147 7.15530 7.46523 7.74884 7.78356 8.05924 8.27868 8.79396 9.08756 9.56839 11.01880 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.037739 B = 0.011199 C = 0.010018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.750230 B = 2499.707988 C = 2794.358910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 O -0.375 6.375 3 C 0.244 3.756 4 C -0.128 4.128 5 C -0.554 4.554 6 H 0.057 0.943 7 C 0.082 3.918 8 N -0.856 5.856 9 Si 0.883 3.117 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.283 1.283 13 C -0.137 4.137 14 H 0.065 0.935 15 C -0.115 4.115 16 C -0.155 4.155 17 C 0.063 3.937 18 O -0.395 6.395 19 C 0.073 3.927 20 H 0.049 0.951 21 H 0.013 0.987 22 H 0.041 0.959 23 H 0.018 0.982 24 H 0.041 0.959 25 H 0.089 0.911 26 H 0.259 0.741 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.472 2.428 -8.126 8.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.294 6.294 3 C 0.206 3.794 4 C -0.186 4.186 5 C -0.591 4.591 6 H 0.075 0.925 7 C -0.123 4.123 8 N -0.492 5.492 9 Si 0.710 3.290 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.209 1.209 13 C -0.156 4.156 14 H 0.084 0.916 15 C -0.153 4.153 16 C -0.193 4.193 17 C -0.015 4.015 18 O -0.314 6.314 19 C -0.003 4.003 20 H 0.067 0.933 21 H 0.031 0.969 22 H 0.060 0.940 23 H 0.037 0.963 24 H 0.060 0.940 25 H 0.107 0.893 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.119 0.881 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.373 2.298 -7.994 8.326 hybrid contribution -0.429 0.380 0.912 1.077 sum -0.803 2.678 -7.082 7.613 Atomic orbital electron populations 1.22189 0.84894 0.98687 0.98804 1.87861 1.16679 1.30409 1.94445 1.18908 0.90762 0.80507 0.89208 1.21745 0.95873 0.99606 1.01330 1.21535 1.37810 1.08870 0.90919 0.92452 1.24972 0.94164 0.94433 0.98776 1.69997 1.37433 1.18791 1.22951 0.86705 0.78598 0.80185 0.83506 1.19679 1.20999 1.20905 1.22309 1.00525 0.95803 0.96926 0.91624 1.21641 1.01261 0.98776 0.93589 1.22212 1.01313 0.96831 0.98955 1.22448 0.97610 0.93399 0.87995 1.87869 1.79135 1.50060 1.14306 1.22751 0.98431 0.93159 0.85914 0.93258 0.96872 0.93998 0.96290 0.94035 0.89259 0.93126 0.91924 0.91713 0.91945 0.91793 0.93844 0.90079 0.88136 0.93298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.15 10.31 101.05 1.04 2.19 16 2 O -0.38 -9.50 9.14 -35.23 -0.32 -9.82 16 3 C 0.24 5.87 0.19 -91.77 -0.02 5.85 16 4 C -0.13 -3.03 7.92 37.16 0.29 -2.74 16 5 C -0.55 -14.45 6.07 -34.44 -0.21 -14.66 16 6 H 0.06 1.50 6.74 -52.48 -0.35 1.15 16 7 C 0.08 2.20 5.24 -17.82 -0.09 2.10 16 8 N -0.86 -23.84 10.87 55.43 0.60 -23.24 16 9 Si 0.88 20.71 29.54 -169.99 -5.02 15.69 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C -0.14 -2.84 1.32 -90.48 -0.12 -2.96 16 14 H 0.07 1.44 6.55 -51.93 -0.34 1.09 16 15 C -0.12 -2.10 4.84 -26.55 -0.13 -2.23 16 16 C -0.16 -2.36 6.14 -26.59 -0.16 -2.52 16 17 C 0.06 0.95 6.84 37.20 0.25 1.20 16 18 O -0.39 -7.36 10.77 -35.23 -0.38 -7.74 16 19 C 0.07 1.45 5.54 37.21 0.21 1.66 16 20 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 21 H 0.01 0.27 6.42 -51.93 -0.33 -0.07 16 22 H 0.04 0.99 7.15 -51.93 -0.37 0.62 16 23 H 0.02 0.40 6.37 -51.93 -0.33 0.07 16 24 H 0.04 0.92 6.37 -51.93 -0.33 0.59 16 25 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 26 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 27 H 0.06 1.14 6.29 -51.93 -0.33 0.82 16 28 H 0.06 1.22 7.79 -51.93 -0.40 0.81 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.10 2.10 6.73 -51.93 -0.35 1.75 16 34 H 0.05 0.95 6.30 -51.93 -0.33 0.62 16 LS Contribution 257.84 15.07 3.89 3.89 Total: -1.00 -28.20 257.84 -5.20 -33.40 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.03 Total: -0.08 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 1.06 Total: -12.10 kcal Atomic # 7 Polarization: -23.84 SS G_CDS: 0.60 Total: -23.24 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.70 Total: -17.56 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.20 -5.20 -33.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272092.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.561 kcal (2) G-P(sol) polarization free energy of solvation -28.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds