Wall clock time and date at job start Mon Mar 30 2020 03:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.52996 * 109.47127 * 180.02562 * 3 2 1 5 5 C 1.50696 * 109.46902 * 60.00206 * 3 2 1 6 6 H 1.08005 * 119.99564 * 240.00216 * 5 3 2 7 7 C 1.37872 * 120.00148 * 59.99877 * 5 3 2 8 8 N 1.31518 * 120.00246 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99951 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47201 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47042 * 120.00270 * 9 7 5 12 12 H 1.48505 * 109.47123 * 240.00177 * 9 7 5 13 13 C 1.53005 * 109.46845 * 300.00036 * 3 2 1 14 14 H 1.08999 * 109.52102 * 60.12687 * 13 3 2 15 15 C 1.53172 * 109.52464 * 299.99894 * 13 3 2 16 16 C 1.53175 * 109.03753 * 183.11559 * 15 13 3 17 17 C 1.53090 * 109.16122 * 56.97939 * 16 15 13 18 18 O 1.42901 * 109.41776 * 302.39111 * 17 16 15 19 19 C 1.42902 * 114.09694 * 61.16016 * 18 17 16 20 20 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 22 22 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 23 23 H 1.09003 * 109.47385 * 59.99763 * 4 3 2 24 24 H 1.09001 * 109.47105 * 180.02562 * 4 3 2 25 25 H 1.09004 * 109.46775 * 299.99875 * 4 3 2 26 26 H 0.96993 * 119.99829 * 180.02562 * 8 7 5 27 27 H 1.08999 * 109.54251 * 302.98170 * 15 13 3 28 28 H 1.09002 * 109.54436 * 63.24883 * 15 13 3 29 29 H 1.09001 * 109.52616 * 176.88664 * 16 15 13 30 30 H 1.09001 * 109.52530 * 297.07614 * 16 15 13 31 31 H 1.08994 * 109.48454 * 62.37832 * 17 16 15 32 32 H 1.09007 * 109.47806 * 182.40999 * 17 16 15 33 33 H 1.08997 * 109.48203 * 178.86232 * 19 18 17 34 34 H 1.08995 * 109.48249 * 58.82492 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 1.5657 2.0532 1.2305 6 1 1.0160 2.9776 1.1313 7 6 1.8605 1.5573 2.4827 8 7 2.5302 0.4319 2.6034 9 14 1.3100 2.4847 4.0079 10 1 0.5796 3.7129 3.6038 11 1 0.4137 1.6198 4.8165 12 1 2.4986 2.8583 4.8160 13 6 1.5588 2.0647 -1.2493 14 1 0.4725 2.1532 -1.2490 15 6 2.0102 1.3055 -2.5008 16 6 1.6213 2.1135 -3.7426 17 6 2.2473 3.5076 -3.6514 18 8 1.8107 4.1467 -2.4502 19 6 2.1872 3.4608 -1.2544 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 3.8568 0.6437 -0.8908 24 1 3.9789 2.1803 -0.0002 25 1 3.8574 0.6435 0.8892 26 1 2.7373 0.0829 3.4843 27 1 3.0917 1.1725 -2.4762 28 1 1.5223 0.3313 -2.5321 29 1 1.9876 1.6074 -4.6359 30 1 0.5363 2.2040 -3.7933 31 1 3.3335 3.4185 -3.6417 32 1 1.9388 4.1015 -4.5119 33 1 1.8355 4.0208 -0.3880 34 1 3.2727 3.3709 -1.2132 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261272092.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:52 Heat of formation + Delta-G solvation = -118.897157 kcal Electronic energy + Delta-G solvation = -15832.135806 eV Core-core repulsion = 13343.229788 eV Total energy + Delta-G solvation = -2488.906017 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.72966 -38.47631 -34.77044 -34.38888 -32.81606 -29.79319 -27.65928 -26.58382 -25.67977 -24.83669 -22.13152 -20.03734 -18.54077 -17.32603 -17.00385 -16.49626 -16.16668 -15.80320 -15.46768 -15.08024 -14.68296 -14.54424 -13.69594 -13.50897 -13.26915 -12.97386 -12.83352 -12.55098 -12.47700 -12.15739 -12.07311 -11.91124 -11.71688 -11.31621 -11.17735 -10.62101 -10.45780 -10.20003 -9.68404 -7.99995 -6.24687 1.38000 1.42556 1.51422 2.42280 3.04562 3.19181 3.70223 4.00015 4.03871 4.11557 4.28403 4.41341 4.62223 4.64924 4.74366 4.84675 4.86864 4.92230 5.01889 5.07546 5.09908 5.15036 5.17909 5.30732 5.39371 5.49609 5.57371 5.71224 6.13707 6.29537 6.37359 6.79375 7.17978 7.53078 8.97846 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.037739 B = 0.011199 C = 0.010018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.750230 B = 2499.707988 C = 2794.358910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 O -0.398 6.398 3 C 0.236 3.764 4 C -0.121 4.121 5 C -0.559 4.559 6 H 0.050 0.950 7 C 0.039 3.961 8 N -0.884 5.884 9 Si 0.938 3.062 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.280 1.280 13 C -0.129 4.129 14 H 0.051 0.949 15 C -0.112 4.112 16 C -0.148 4.148 17 C 0.054 3.946 18 O -0.407 6.407 19 C 0.082 3.918 20 H 0.070 0.930 21 H 0.029 0.971 22 H 0.019 0.981 23 H 0.034 0.966 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.257 0.743 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.112 0.888 33 H 0.082 0.918 34 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.596 3.000 -9.567 10.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 O -0.318 6.318 3 C 0.198 3.802 4 C -0.179 4.179 5 C -0.597 4.597 6 H 0.068 0.932 7 C -0.164 4.164 8 N -0.521 5.521 9 Si 0.764 3.236 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.206 1.206 13 C -0.148 4.148 14 H 0.069 0.931 15 C -0.150 4.150 16 C -0.186 4.186 17 C -0.022 4.022 18 O -0.326 6.326 19 C 0.006 3.994 20 H 0.088 0.912 21 H 0.048 0.952 22 H 0.038 0.962 23 H 0.052 0.948 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.130 0.870 33 H 0.100 0.900 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.503 2.880 -9.446 9.888 hybrid contribution -0.408 0.195 1.300 1.376 sum -0.910 3.076 -8.146 8.755 Atomic orbital electron populations 1.22246 0.83601 0.99988 0.98478 1.87809 1.18198 1.31155 1.94602 1.18995 0.90855 0.80294 0.90041 1.21644 0.95915 0.99780 1.00523 1.21786 1.37190 1.08634 0.92093 0.93175 1.25591 0.94400 0.95139 1.01229 1.70121 1.38619 1.20053 1.23285 0.85842 0.78152 0.79074 0.80540 1.19379 1.21100 1.20551 1.22141 0.99564 0.96337 0.96791 0.93070 1.21590 1.01038 0.98529 0.93813 1.22177 1.01369 0.96568 0.98450 1.22773 0.98425 0.93711 0.87335 1.87850 1.79463 1.50441 1.14872 1.22500 0.98253 0.92303 0.86366 0.91178 0.95212 0.96208 0.94756 0.93254 0.92270 0.93315 0.91955 0.92521 0.88840 0.91920 0.92765 0.87003 0.89961 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.37 10.31 113.37 1.17 3.54 16 2 O -0.40 -20.14 9.14 -148.98 -1.36 -21.50 16 3 C 0.24 11.33 0.19 -11.54 0.00 11.33 16 4 C -0.12 -5.71 7.92 71.98 0.57 -5.14 16 5 C -0.56 -29.39 6.07 25.60 0.16 -29.24 16 6 H 0.05 2.65 6.74 -2.91 -0.02 2.63 16 7 C 0.04 2.11 5.24 84.65 0.44 2.55 16 8 N -0.88 -49.88 10.87 21.45 0.23 -49.64 16 9 Si 0.94 42.84 29.54 68.60 2.03 44.87 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 C -0.13 -5.26 1.32 -10.70 -0.01 -5.27 16 14 H 0.05 2.21 6.55 -2.39 -0.02 2.19 16 15 C -0.11 -3.86 4.84 30.71 0.15 -3.71 16 16 C -0.15 -3.99 6.14 30.68 0.19 -3.80 16 17 C 0.05 1.44 6.84 72.01 0.49 1.93 16 18 O -0.41 -14.32 10.77 -148.98 -1.60 -15.92 16 19 C 0.08 3.17 5.54 72.01 0.40 3.57 16 20 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 21 H 0.03 1.19 6.42 -2.39 -0.02 1.17 16 22 H 0.02 0.93 7.15 -2.38 -0.02 0.92 16 23 H 0.03 1.46 6.37 -2.39 -0.02 1.44 16 24 H 0.05 2.17 6.37 -2.39 -0.02 2.16 16 25 H 0.06 3.16 6.07 -2.38 -0.01 3.14 16 26 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 27 H 0.06 2.14 6.29 -2.39 -0.02 2.12 16 28 H 0.06 2.03 7.79 -2.39 -0.02 2.01 16 29 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16 33 H 0.08 3.44 6.73 -2.39 -0.02 3.42 16 34 H 0.05 1.94 6.30 -2.39 -0.02 1.93 16 Total: -1.00 -59.50 257.84 3.92 -55.58 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 1.08 Total: 10.88 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: 3.55 Total: -24.25 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 0.23 Total: -49.64 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -2.97 Total: -37.42 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -59.50 3.92 -55.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272092.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.319 kcal (2) G-P(sol) polarization free energy of solvation -59.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds