Wall clock time and date at job start Mon Mar 30 2020 03:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 113.99883 * 2 1 4 4 C 1.53001 * 109.46814 * 180.02562 * 3 2 1 5 5 C 1.50688 * 109.47599 * 300.00013 * 3 2 1 6 6 H 1.08010 * 120.00104 * 120.00012 * 5 3 2 7 7 C 1.37881 * 120.00276 * 300.00262 * 5 3 2 8 8 N 1.31513 * 119.99813 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00012 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47491 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46975 * 120.00301 * 9 7 5 12 12 H 1.48505 * 109.47081 * 240.00204 * 9 7 5 13 13 C 1.53004 * 109.47155 * 60.00639 * 3 2 1 14 14 H 1.09002 * 109.56683 * 304.83944 * 13 3 2 15 15 C 1.53179 * 109.52254 * 64.99417 * 13 3 2 16 16 C 1.53177 * 109.10692 * 176.93292 * 15 13 3 17 17 C 1.53091 * 109.16264 * 302.97408 * 16 15 13 18 18 O 1.42903 * 109.41633 * 57.61251 * 17 16 15 19 19 C 1.42901 * 114.09356 * 298.84001 * 18 17 16 20 20 H 1.09003 * 109.47287 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46722 * 299.99680 * 1 2 3 22 22 H 1.08997 * 109.47050 * 59.99442 * 1 2 3 23 23 H 1.09007 * 109.47029 * 300.00405 * 4 3 2 24 24 H 1.08998 * 109.47144 * 59.99844 * 4 3 2 25 25 H 1.08999 * 109.47192 * 180.02562 * 4 3 2 26 26 H 0.96998 * 119.99725 * 180.02562 * 8 7 5 27 27 H 1.09002 * 109.54484 * 57.02088 * 15 13 3 28 28 H 1.08999 * 109.54222 * 296.84255 * 15 13 3 29 29 H 1.09004 * 109.52253 * 62.88396 * 16 15 13 30 30 H 1.08999 * 109.52129 * 183.00522 * 16 15 13 31 31 H 1.09000 * 109.47857 * 177.59315 * 17 16 15 32 32 H 1.09000 * 109.48061 * 297.62689 * 17 16 15 33 33 H 1.09007 * 109.48051 * 181.14148 * 19 18 17 34 34 H 1.09003 * 109.48369 * 301.17616 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 1.5656 2.0533 -1.2303 6 1 1.0159 2.9778 -1.1312 7 6 1.8604 1.5575 -2.4827 8 7 2.5292 0.4316 -2.6034 9 14 1.3086 2.4843 -4.0078 10 1 0.5785 3.7126 -3.6036 11 1 2.4966 2.8587 -4.8163 12 1 0.4126 1.6186 -4.8160 13 6 1.5589 2.0646 1.2493 14 1 0.4699 2.0771 1.2954 15 6 2.1161 1.3735 2.4976 16 6 1.7233 2.1836 3.7368 17 6 2.2434 3.6156 3.5868 18 8 1.7117 4.1913 2.3918 19 6 2.0855 3.5032 1.1964 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 3.8574 0.6434 0.8891 24 1 3.8567 0.6438 -0.8908 25 1 3.9788 2.1803 -0.0002 26 1 2.7369 0.0830 -3.4845 27 1 3.2025 1.3165 2.4285 28 1 1.7023 0.3679 2.5730 29 1 0.6376 2.1985 3.8331 30 1 2.1614 1.7270 4.6244 31 1 1.9299 4.2080 4.4463 32 1 3.3319 3.6030 3.5312 33 1 1.6582 4.0147 0.3338 34 1 3.1719 3.4891 1.1095 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261272093.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:54 Heat of formation + Delta-G solvation = -100.164635 kcal Electronic energy + Delta-G solvation = -15830.171170 eV Core-core repulsion = 13342.077456 eV Total energy + Delta-G solvation = -2488.093714 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.16020 -36.76819 -33.05753 -32.60934 -31.20123 -28.08339 -25.79093 -24.75682 -24.11809 -23.26177 -20.60798 -18.37209 -16.62858 -15.77442 -15.41770 -14.68242 -14.52825 -14.26751 -13.60716 -13.39278 -13.17168 -12.93006 -12.08190 -11.94858 -11.53882 -11.17185 -11.01678 -10.89187 -10.71680 -10.40089 -10.27860 -10.19253 -10.16229 -9.78585 -9.49172 -8.89101 -8.54280 -8.48014 -7.79134 -5.97454 -4.16923 3.25676 3.35009 3.38377 4.37419 4.44228 5.16523 5.28693 5.35972 5.43517 5.55331 5.72518 5.86774 5.98592 6.08068 6.23188 6.31878 6.40819 6.46504 6.60733 6.64423 6.70648 6.88513 6.94122 7.00727 7.02615 7.15824 7.46922 7.74901 7.79193 8.05955 8.27829 8.79232 9.08646 9.56719 11.01761 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.037328 B = 0.011266 C = 0.010050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.926756 B = 2484.765259 C = 2785.416824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 O -0.375 6.375 3 C 0.244 3.756 4 C -0.128 4.128 5 C -0.554 4.554 6 H 0.058 0.942 7 C 0.082 3.918 8 N -0.855 5.855 9 Si 0.882 3.118 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.284 1.284 13 C -0.137 4.137 14 H 0.066 0.934 15 C -0.116 4.116 16 C -0.155 4.155 17 C 0.063 3.937 18 O -0.395 6.395 19 C 0.074 3.926 20 H 0.049 0.951 21 H 0.013 0.987 22 H 0.042 0.958 23 H 0.019 0.981 24 H 0.089 0.911 25 H 0.040 0.960 26 H 0.259 0.741 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.043 0.957 33 H 0.102 0.898 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.405 2.582 8.046 8.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.294 6.294 3 C 0.206 3.794 4 C -0.185 4.185 5 C -0.592 4.592 6 H 0.076 0.924 7 C -0.123 4.123 8 N -0.491 5.491 9 Si 0.710 3.290 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.210 1.210 13 C -0.156 4.156 14 H 0.084 0.916 15 C -0.154 4.154 16 C -0.193 4.193 17 C -0.015 4.015 18 O -0.314 6.314 19 C -0.002 4.002 20 H 0.068 0.932 21 H 0.032 0.968 22 H 0.060 0.940 23 H 0.038 0.962 24 H 0.107 0.893 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.120 0.880 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.319 2.443 7.914 8.289 hybrid contribution -0.399 0.387 -0.907 1.064 sum -0.718 2.830 7.007 7.591 Atomic orbital electron populations 1.22197 0.84891 0.98703 0.98810 1.87861 1.16691 1.30420 1.94451 1.18904 0.90782 0.80496 0.89202 1.21740 0.95844 0.99564 1.01352 1.21550 1.37843 1.08881 0.90922 0.92379 1.24975 0.94166 0.94423 0.98781 1.69999 1.37448 1.18756 1.22947 0.86705 0.78605 0.80180 0.83510 1.19671 1.20913 1.20992 1.22345 1.00472 0.95824 0.96961 0.91586 1.21670 1.01076 0.98946 0.93675 1.22210 1.01511 0.96666 0.98913 1.22445 0.97135 0.93742 0.88134 1.87872 1.74816 1.53913 1.14784 1.22786 0.98928 0.92671 0.85825 0.93240 0.96839 0.93989 0.96217 0.89269 0.94129 0.93127 0.91820 0.91790 0.91812 0.91949 0.90093 0.93845 0.88036 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.14 10.31 101.05 1.04 2.18 16 2 O -0.38 -9.53 9.34 -35.23 -0.33 -9.86 16 3 C 0.24 5.87 0.20 -91.77 -0.02 5.85 16 4 C -0.13 -3.02 7.89 37.16 0.29 -2.73 16 5 C -0.55 -14.43 6.06 -34.44 -0.21 -14.64 16 6 H 0.06 1.51 6.40 -52.48 -0.34 1.17 16 7 C 0.08 2.19 5.24 -17.82 -0.09 2.10 16 8 N -0.86 -23.83 10.87 55.43 0.60 -23.22 16 9 Si 0.88 20.68 29.54 -169.99 -5.02 15.66 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C -0.14 -2.85 1.51 -90.38 -0.14 -2.99 16 14 H 0.07 1.44 6.30 -51.93 -0.33 1.11 16 15 C -0.12 -2.12 4.77 -26.55 -0.13 -2.25 16 16 C -0.16 -2.36 6.14 -26.59 -0.16 -2.52 16 17 C 0.06 0.95 6.84 37.20 0.25 1.20 16 18 O -0.39 -7.38 10.77 -35.23 -0.38 -7.76 16 19 C 0.07 1.47 5.56 37.30 0.21 1.67 16 20 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 21 H 0.01 0.27 6.31 -51.93 -0.33 -0.05 16 22 H 0.04 0.99 7.15 -51.93 -0.37 0.62 16 23 H 0.02 0.42 6.29 -51.92 -0.33 0.09 16 24 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 25 H 0.04 0.90 6.51 -51.93 -0.34 0.56 16 26 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 27 H 0.06 1.16 6.19 -51.93 -0.32 0.84 16 28 H 0.06 1.20 7.92 -51.93 -0.41 0.79 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.10 2.13 6.46 -51.92 -0.34 1.79 16 34 H 0.05 0.94 6.46 -51.93 -0.34 0.61 16 LS Contribution 257.45 15.07 3.88 3.88 Total: -1.00 -28.18 257.45 -5.19 -33.38 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -4.99 Total: 0.03 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: 1.05 Total: -12.11 kcal Atomic # 7 Polarization: -23.83 SS G_CDS: 0.60 Total: -23.22 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.71 Total: -17.62 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.18 -5.19 -33.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272093.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.790 kcal (2) G-P(sol) polarization free energy of solvation -28.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds