Wall clock time and date at job start Mon Mar 30 2020 03:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 113.99883 * 2 1 4 4 C 1.53001 * 109.46814 * 180.02562 * 3 2 1 5 5 C 1.50688 * 109.47599 * 300.00013 * 3 2 1 6 6 H 1.08010 * 120.00104 * 120.00012 * 5 3 2 7 7 C 1.37881 * 120.00276 * 300.00262 * 5 3 2 8 8 N 1.31513 * 119.99813 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00012 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47491 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46975 * 120.00301 * 9 7 5 12 12 H 1.48505 * 109.47081 * 240.00204 * 9 7 5 13 13 C 1.53004 * 109.47155 * 60.00639 * 3 2 1 14 14 H 1.09002 * 109.56683 * 304.83944 * 13 3 2 15 15 C 1.53179 * 109.52254 * 64.99417 * 13 3 2 16 16 C 1.53177 * 109.10692 * 176.93292 * 15 13 3 17 17 C 1.53091 * 109.16264 * 302.97408 * 16 15 13 18 18 O 1.42903 * 109.41633 * 57.61251 * 17 16 15 19 19 C 1.42901 * 114.09356 * 298.84001 * 18 17 16 20 20 H 1.09003 * 109.47287 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46722 * 299.99680 * 1 2 3 22 22 H 1.08997 * 109.47050 * 59.99442 * 1 2 3 23 23 H 1.09007 * 109.47029 * 300.00405 * 4 3 2 24 24 H 1.08998 * 109.47144 * 59.99844 * 4 3 2 25 25 H 1.08999 * 109.47192 * 180.02562 * 4 3 2 26 26 H 0.96998 * 119.99725 * 180.02562 * 8 7 5 27 27 H 1.09002 * 109.54484 * 57.02088 * 15 13 3 28 28 H 1.08999 * 109.54222 * 296.84255 * 15 13 3 29 29 H 1.09004 * 109.52253 * 62.88396 * 16 15 13 30 30 H 1.08999 * 109.52129 * 183.00522 * 16 15 13 31 31 H 1.09000 * 109.47857 * 177.59315 * 17 16 15 32 32 H 1.09000 * 109.48061 * 297.62689 * 17 16 15 33 33 H 1.09007 * 109.48051 * 181.14148 * 19 18 17 34 34 H 1.09003 * 109.48369 * 301.17616 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 1.5656 2.0533 -1.2303 6 1 1.0159 2.9778 -1.1312 7 6 1.8604 1.5575 -2.4827 8 7 2.5292 0.4316 -2.6034 9 14 1.3086 2.4843 -4.0078 10 1 0.5785 3.7126 -3.6036 11 1 2.4966 2.8587 -4.8163 12 1 0.4126 1.6186 -4.8160 13 6 1.5589 2.0646 1.2493 14 1 0.4699 2.0771 1.2954 15 6 2.1161 1.3735 2.4976 16 6 1.7233 2.1836 3.7368 17 6 2.2434 3.6156 3.5868 18 8 1.7117 4.1913 2.3918 19 6 2.0855 3.5032 1.1964 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 3.8574 0.6434 0.8891 24 1 3.8567 0.6438 -0.8908 25 1 3.9788 2.1803 -0.0002 26 1 2.7369 0.0830 -3.4845 27 1 3.2025 1.3165 2.4285 28 1 1.7023 0.3679 2.5730 29 1 0.6376 2.1985 3.8331 30 1 2.1614 1.7270 4.6244 31 1 1.9299 4.2080 4.4463 32 1 3.3319 3.6030 3.5312 33 1 1.6582 4.0147 0.3338 34 1 3.1719 3.4891 1.1095 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261272093.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:53 Heat of formation + Delta-G solvation = -118.120089 kcal Electronic energy + Delta-G solvation = -15830.949777 eV Core-core repulsion = 13342.077456 eV Total energy + Delta-G solvation = -2488.872321 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.71821 -38.47775 -34.79053 -34.39227 -32.77913 -29.80373 -27.68779 -26.59486 -25.63960 -24.83010 -22.13945 -20.04018 -18.55099 -17.32945 -16.99070 -16.47458 -16.19300 -15.78862 -15.46160 -15.09390 -14.64793 -14.57298 -13.70125 -13.51811 -13.27334 -12.95629 -12.82571 -12.54913 -12.46351 -12.15650 -12.08192 -11.90110 -11.69163 -11.33414 -11.19640 -10.61611 -10.44755 -10.18155 -9.67986 -7.99775 -6.24412 1.38204 1.42794 1.51598 2.42446 3.04743 3.19623 3.69994 3.99920 4.04086 4.11472 4.29081 4.41637 4.61901 4.65295 4.73852 4.85082 4.86983 4.92544 5.01750 5.07755 5.09984 5.15303 5.17912 5.30533 5.39697 5.48723 5.57731 5.71956 6.13937 6.29915 6.37621 6.79658 7.18027 7.53334 8.98101 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.037328 B = 0.011266 C = 0.010050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.926756 B = 2484.765259 C = 2785.416824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 O -0.399 6.399 3 C 0.236 3.764 4 C -0.121 4.121 5 C -0.559 4.559 6 H 0.052 0.948 7 C 0.039 3.961 8 N -0.884 5.884 9 Si 0.938 3.062 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.285 1.285 13 C -0.130 4.130 14 H 0.052 0.948 15 C -0.113 4.113 16 C -0.148 4.148 17 C 0.054 3.946 18 O -0.407 6.407 19 C 0.083 3.917 20 H 0.070 0.930 21 H 0.030 0.970 22 H 0.020 0.980 23 H 0.034 0.966 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.257 0.743 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.521 3.211 9.483 10.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.318 6.318 3 C 0.198 3.802 4 C -0.178 4.178 5 C -0.597 4.597 6 H 0.070 0.930 7 C -0.164 4.164 8 N -0.521 5.521 9 Si 0.764 3.236 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.211 1.211 13 C -0.149 4.149 14 H 0.071 0.929 15 C -0.151 4.151 16 C -0.185 4.185 17 C -0.023 4.023 18 O -0.326 6.326 19 C 0.007 3.993 20 H 0.088 0.912 21 H 0.048 0.952 22 H 0.038 0.962 23 H 0.053 0.947 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.130 0.870 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.440 3.082 9.362 9.866 hybrid contribution -0.378 0.187 -1.292 1.359 sum -0.818 3.269 8.070 8.746 Atomic orbital electron populations 1.22255 0.83587 1.00005 0.98503 1.87809 1.18227 1.31201 1.94614 1.18995 0.90864 0.80275 0.90062 1.21639 0.95903 0.99715 1.00548 1.21810 1.37193 1.08675 0.92051 0.92983 1.25598 0.94410 0.95128 1.01244 1.70124 1.38666 1.20039 1.23268 0.85842 0.78144 0.79083 0.80541 1.19325 1.20593 1.21121 1.22180 0.99640 0.96274 0.96813 0.92915 1.21619 1.00801 0.98780 0.93890 1.22174 1.01687 0.96290 0.98397 1.22771 0.97874 0.94110 0.87497 1.87853 1.75275 1.54166 1.15337 1.22528 0.98647 0.91886 0.86288 0.91172 0.95179 0.96161 0.94672 0.92286 0.93383 0.93332 0.91826 0.92584 0.91922 0.88840 0.87012 0.92794 0.89871 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.35 10.31 113.37 1.17 3.52 16 2 O -0.40 -20.23 9.34 -148.98 -1.39 -21.62 16 3 C 0.24 11.32 0.20 -11.54 0.00 11.32 16 4 C -0.12 -5.69 7.89 71.98 0.57 -5.12 16 5 C -0.56 -29.32 6.06 25.60 0.16 -29.17 16 6 H 0.05 2.73 6.40 -2.91 -0.02 2.71 16 7 C 0.04 2.09 5.24 84.66 0.44 2.54 16 8 N -0.88 -49.89 10.87 21.45 0.23 -49.65 16 9 Si 0.94 42.78 29.54 68.60 2.03 44.81 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 13 C -0.13 -5.29 1.51 -10.64 -0.02 -5.31 16 14 H 0.05 2.26 6.30 -2.39 -0.02 2.25 16 15 C -0.11 -3.90 4.77 30.71 0.15 -3.75 16 16 C -0.15 -3.99 6.14 30.68 0.19 -3.80 16 17 C 0.05 1.44 6.84 72.01 0.49 1.93 16 18 O -0.41 -14.35 10.77 -148.98 -1.60 -15.95 16 19 C 0.08 3.21 5.56 72.08 0.40 3.61 16 20 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 21 H 0.03 1.20 6.31 -2.39 -0.02 1.19 16 22 H 0.02 0.95 7.15 -2.39 -0.02 0.94 16 23 H 0.03 1.49 6.29 -2.38 -0.01 1.48 16 24 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 25 H 0.05 2.12 6.51 -2.39 -0.02 2.10 16 26 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 27 H 0.06 2.17 6.19 -2.39 -0.01 2.16 16 28 H 0.06 2.00 7.92 -2.39 -0.02 1.98 16 29 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 3.49 6.46 -2.38 -0.02 3.48 16 34 H 0.05 1.88 6.46 -2.39 -0.02 1.87 16 Total: -1.00 -59.44 257.45 3.89 -55.56 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 1.08 Total: 11.08 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: 3.55 Total: -24.22 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.23 Total: -49.65 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -3.00 Total: -37.57 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -59.44 3.89 -55.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272093.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.563 kcal (2) G-P(sol) polarization free energy of solvation -59.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds