Wall clock time and date at job start Mon Mar 30 2020 03:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00030 * 2 1 4 4 C 1.53006 * 109.47063 * 179.05717 * 3 2 1 5 5 C 1.50699 * 109.47271 * 59.05966 * 3 2 1 6 6 H 1.07996 * 120.00417 * 239.99891 * 5 3 2 7 7 C 1.37877 * 119.99969 * 59.99603 * 5 3 2 8 8 N 1.31510 * 120.00254 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99899 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47024 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46813 * 120.00103 * 9 7 5 12 12 H 1.48504 * 109.46937 * 239.99816 * 9 7 5 13 13 C 1.52995 * 109.47620 * 299.05627 * 3 2 1 14 14 H 1.09007 * 109.57416 * 60.11878 * 13 3 2 15 15 C 1.53174 * 109.53768 * 180.27493 * 13 3 2 16 16 C 1.53177 * 109.04988 * 176.87338 * 15 13 3 17 17 C 1.53090 * 109.16399 * 303.02817 * 16 15 13 18 18 O 1.42901 * 109.41353 * 57.60769 * 17 16 15 19 19 C 1.42906 * 114.09640 * 298.83726 * 18 17 16 20 20 H 1.09007 * 109.46715 * 305.17657 * 1 2 3 21 21 H 1.08997 * 109.47081 * 65.17165 * 1 2 3 22 22 H 1.08996 * 109.47263 * 185.17917 * 1 2 3 23 23 H 1.08997 * 109.47072 * 179.97438 * 4 3 2 24 24 H 1.08998 * 109.46998 * 300.00124 * 4 3 2 25 25 H 1.08998 * 109.46987 * 59.99948 * 4 3 2 26 26 H 0.97003 * 120.00401 * 180.02562 * 8 7 5 27 27 H 1.09000 * 109.53266 * 57.00883 * 15 13 3 28 28 H 1.09004 * 109.61456 * 296.79689 * 15 13 3 29 29 H 1.08996 * 109.52305 * 183.11427 * 16 15 13 30 30 H 1.09007 * 109.51715 * 62.93039 * 16 15 13 31 31 H 1.08999 * 109.48122 * 297.62345 * 17 16 15 32 32 H 1.09003 * 109.48177 * 177.59017 * 17 16 15 33 33 H 1.08998 * 109.47836 * 181.14054 * 19 18 17 34 34 H 1.08998 * 109.48497 * 301.16835 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0237 5 6 1.5473 2.0615 1.2186 6 1 0.9993 2.9851 1.1052 7 6 1.8232 1.5739 2.4784 8 7 2.4909 0.4494 2.6167 9 14 1.2486 2.5108 3.9890 10 1 0.5237 3.7357 3.5657 11 1 0.3406 1.6504 4.7893 12 1 2.4244 2.8905 4.8128 13 6 1.5778 2.0563 -1.2609 14 1 0.4915 2.1452 -1.2785 15 6 2.2056 3.4535 -1.2657 16 6 1.8295 4.1662 -2.5684 17 6 2.2905 3.3179 -3.7564 18 8 1.6941 2.0219 -3.6747 19 6 2.0484 1.2897 -2.4997 20 1 -0.3633 0.5921 0.8401 21 1 -0.3633 0.4315 -0.9326 22 1 -0.3633 -1.0234 0.0928 23 1 3.9787 2.1804 0.0233 24 1 3.8435 0.6497 0.9220 25 1 3.8703 0.6378 -0.8577 26 1 2.6847 0.1062 3.5030 27 1 3.2900 3.3660 -1.1980 28 1 1.8322 4.0254 -0.4161 29 1 2.3175 5.1401 -2.6048 30 1 0.7482 4.2976 -2.6125 31 1 3.3759 3.2207 -3.7342 32 1 1.9876 3.7995 -4.6862 33 1 1.5709 0.3102 -2.5240 34 1 3.1306 1.1658 -2.4610 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261272094.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:55 Heat of formation + Delta-G solvation = -101.294121 kcal Electronic energy + Delta-G solvation = -15830.564005 eV Core-core repulsion = 13342.421312 eV Total energy + Delta-G solvation = -2488.142692 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.18040 -36.75954 -33.33697 -32.35413 -31.11961 -28.13530 -25.78459 -24.75145 -24.29730 -23.10305 -20.57812 -18.44314 -16.53067 -15.80125 -15.40148 -14.74934 -14.59314 -14.16464 -13.77655 -13.49220 -13.02849 -12.81468 -12.05352 -11.88992 -11.57894 -11.34860 -11.02670 -10.83966 -10.63934 -10.49573 -10.33752 -10.17206 -9.97440 -9.71352 -9.57299 -8.94411 -8.60542 -8.47843 -7.77079 -5.97140 -4.15728 3.24694 3.34014 3.36775 4.34943 4.41058 5.14464 5.32125 5.38998 5.43042 5.62478 5.71440 5.85371 5.97714 6.06705 6.24051 6.27511 6.42494 6.47441 6.64022 6.65380 6.72401 6.93711 6.98097 7.00815 7.03528 7.16366 7.46770 7.72207 7.76779 8.05906 8.28440 8.79820 9.08772 9.56992 11.02141 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.038274 B = 0.011109 C = 0.009983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.395652 B = 2519.952802 C = 2804.017084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.378 6.378 3 C 0.243 3.757 4 C -0.128 4.128 5 C -0.548 4.548 6 H 0.056 0.944 7 C 0.081 3.919 8 N -0.856 5.856 9 Si 0.882 3.118 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C -0.135 4.135 14 H 0.065 0.935 15 C -0.106 4.106 16 C -0.157 4.157 17 C 0.063 3.937 18 O -0.394 6.394 19 C 0.065 3.935 20 H 0.045 0.955 21 H 0.012 0.988 22 H 0.050 0.950 23 H 0.042 0.958 24 H 0.089 0.911 25 H 0.016 0.984 26 H 0.258 0.742 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.238 4.031 -7.200 8.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.297 6.297 3 C 0.205 3.795 4 C -0.185 4.185 5 C -0.585 4.585 6 H 0.075 0.925 7 C -0.125 4.125 8 N -0.492 5.492 9 Si 0.710 3.290 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C -0.154 4.154 14 H 0.083 0.917 15 C -0.144 4.144 16 C -0.195 4.195 17 C -0.014 4.014 18 O -0.313 6.313 19 C -0.011 4.011 20 H 0.063 0.937 21 H 0.030 0.970 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.108 0.892 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.160 3.655 -7.208 8.084 hybrid contribution -0.400 0.901 1.191 1.546 sum -0.560 4.556 -6.017 7.568 Atomic orbital electron populations 1.22207 0.84754 0.99189 0.98558 1.87854 1.16854 1.30515 1.94468 1.18937 0.90844 0.80454 0.89259 1.21740 0.95788 0.99613 1.01386 1.21475 1.37544 1.08749 0.90777 0.92534 1.24975 0.94285 0.94465 0.98729 1.69994 1.37807 1.18995 1.22452 0.86709 0.78637 0.80179 0.83469 1.19792 1.20991 1.20939 1.22301 1.00364 0.95763 0.97003 0.91695 1.21576 1.00655 0.96064 0.96072 1.22248 1.01656 0.98827 0.96779 1.22465 0.96636 0.84357 0.97943 1.87843 1.72193 1.28246 1.43054 1.22770 0.99367 0.94940 0.83989 0.93693 0.96978 0.93168 0.93904 0.89244 0.96457 0.93139 0.92022 0.90794 0.91864 0.91782 0.93821 0.90054 0.89110 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.12 10.27 101.05 1.04 2.16 16 2 O -0.38 -9.57 9.12 -35.23 -0.32 -9.89 16 3 C 0.24 5.84 0.19 -91.77 -0.02 5.82 16 4 C -0.13 -3.02 7.92 37.16 0.29 -2.73 16 5 C -0.55 -14.26 5.95 -34.44 -0.21 -14.47 16 6 H 0.06 1.48 6.74 -52.49 -0.35 1.12 16 7 C 0.08 2.16 5.24 -17.82 -0.09 2.06 16 8 N -0.86 -23.84 10.87 55.43 0.60 -23.24 16 9 Si 0.88 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 C -0.14 -2.81 1.35 -90.48 -0.12 -2.93 16 14 H 0.06 1.42 6.69 -51.93 -0.35 1.07 16 15 C -0.11 -1.98 4.71 -26.55 -0.13 -2.11 16 16 C -0.16 -2.43 6.14 -26.59 -0.16 -2.59 16 17 C 0.06 0.95 6.84 37.20 0.25 1.21 16 18 O -0.39 -7.23 10.77 -35.23 -0.38 -7.61 16 19 C 0.07 1.26 5.66 37.21 0.21 1.47 16 20 H 0.04 1.06 6.95 -51.93 -0.36 0.70 16 21 H 0.01 0.24 6.72 -51.93 -0.35 -0.10 16 22 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.04 0.95 6.36 -51.93 -0.33 0.62 16 24 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 25 H 0.02 0.36 6.38 -51.93 -0.33 0.03 16 26 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 27 H 0.06 1.15 6.28 -51.93 -0.33 0.82 16 28 H 0.07 1.47 6.76 -51.93 -0.35 1.12 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.09 1.80 7.76 -51.93 -0.40 1.40 16 34 H 0.05 0.94 6.31 -51.93 -0.33 0.62 16 LS Contribution 257.93 15.07 3.89 3.89 Total: -1.00 -28.16 257.93 -5.21 -33.36 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -5.04 Total: -0.05 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 1.07 Total: -12.11 kcal Atomic # 7 Polarization: -23.84 SS G_CDS: 0.60 Total: -23.24 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.70 Total: -17.50 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.16 -5.21 -33.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272094.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.933 kcal (2) G-P(sol) polarization free energy of solvation -28.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds