Wall clock time and date at job start Mon Mar 30 2020 03:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00030 * 2 1 4 4 C 1.53006 * 109.47063 * 179.05717 * 3 2 1 5 5 C 1.50699 * 109.47271 * 59.05966 * 3 2 1 6 6 H 1.07996 * 120.00417 * 239.99891 * 5 3 2 7 7 C 1.37877 * 119.99969 * 59.99603 * 5 3 2 8 8 N 1.31510 * 120.00254 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99899 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47024 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46813 * 120.00103 * 9 7 5 12 12 H 1.48504 * 109.46937 * 239.99816 * 9 7 5 13 13 C 1.52995 * 109.47620 * 299.05627 * 3 2 1 14 14 H 1.09007 * 109.57416 * 60.11878 * 13 3 2 15 15 C 1.53174 * 109.53768 * 180.27493 * 13 3 2 16 16 C 1.53177 * 109.04988 * 176.87338 * 15 13 3 17 17 C 1.53090 * 109.16399 * 303.02817 * 16 15 13 18 18 O 1.42901 * 109.41353 * 57.60769 * 17 16 15 19 19 C 1.42906 * 114.09640 * 298.83726 * 18 17 16 20 20 H 1.09007 * 109.46715 * 305.17657 * 1 2 3 21 21 H 1.08997 * 109.47081 * 65.17165 * 1 2 3 22 22 H 1.08996 * 109.47263 * 185.17917 * 1 2 3 23 23 H 1.08997 * 109.47072 * 179.97438 * 4 3 2 24 24 H 1.08998 * 109.46998 * 300.00124 * 4 3 2 25 25 H 1.08998 * 109.46987 * 59.99948 * 4 3 2 26 26 H 0.97003 * 120.00401 * 180.02562 * 8 7 5 27 27 H 1.09000 * 109.53266 * 57.00883 * 15 13 3 28 28 H 1.09004 * 109.61456 * 296.79689 * 15 13 3 29 29 H 1.08996 * 109.52305 * 183.11427 * 16 15 13 30 30 H 1.09007 * 109.51715 * 62.93039 * 16 15 13 31 31 H 1.08999 * 109.48122 * 297.62345 * 17 16 15 32 32 H 1.09003 * 109.48177 * 177.59017 * 17 16 15 33 33 H 1.08998 * 109.47836 * 181.14054 * 19 18 17 34 34 H 1.08998 * 109.48497 * 301.16835 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0237 5 6 1.5473 2.0615 1.2186 6 1 0.9993 2.9851 1.1052 7 6 1.8232 1.5739 2.4784 8 7 2.4909 0.4494 2.6167 9 14 1.2486 2.5108 3.9890 10 1 0.5237 3.7357 3.5657 11 1 0.3406 1.6504 4.7893 12 1 2.4244 2.8905 4.8128 13 6 1.5778 2.0563 -1.2609 14 1 0.4915 2.1452 -1.2785 15 6 2.2056 3.4535 -1.2657 16 6 1.8295 4.1662 -2.5684 17 6 2.2905 3.3179 -3.7564 18 8 1.6941 2.0219 -3.6747 19 6 2.0484 1.2897 -2.4997 20 1 -0.3633 0.5921 0.8401 21 1 -0.3633 0.4315 -0.9326 22 1 -0.3633 -1.0234 0.0928 23 1 3.9787 2.1804 0.0233 24 1 3.8435 0.6497 0.9220 25 1 3.8703 0.6378 -0.8577 26 1 2.6847 0.1062 3.5030 27 1 3.2900 3.3660 -1.1980 28 1 1.8322 4.0254 -0.4161 29 1 2.3175 5.1401 -2.6048 30 1 0.7482 4.2976 -2.6125 31 1 3.3759 3.2207 -3.7342 32 1 1.9876 3.7995 -4.6862 33 1 1.5709 0.3102 -2.5240 34 1 3.1306 1.1658 -2.4610 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261272094.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:55 Heat of formation + Delta-G solvation = -119.141016 kcal Electronic energy + Delta-G solvation = -15831.337904 eV Core-core repulsion = 13342.421312 eV Total energy + Delta-G solvation = -2488.916592 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.73069 -38.46370 -35.02595 -34.23165 -32.63728 -29.86217 -27.72496 -26.58114 -25.75412 -24.71451 -22.09996 -20.13032 -18.46622 -17.35369 -16.83965 -16.50137 -16.42590 -15.67671 -15.43158 -15.27418 -14.70757 -14.38371 -13.61250 -13.47706 -13.32269 -13.09086 -12.86292 -12.56593 -12.36205 -12.21838 -12.09302 -11.90833 -11.59645 -11.36375 -11.08958 -10.65470 -10.55500 -10.22375 -9.63899 -7.99373 -6.23330 1.37589 1.41985 1.50506 2.41919 3.04547 3.16521 3.69692 4.02505 4.04894 4.14873 4.25490 4.41557 4.61245 4.64523 4.74252 4.84398 4.87706 4.89102 4.98967 5.04849 5.16253 5.16947 5.20158 5.31386 5.44448 5.47392 5.58927 5.73467 6.13641 6.30522 6.33902 6.79863 7.17874 7.53503 8.98502 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.038274 B = 0.011109 C = 0.009983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.395652 B = 2519.952802 C = 2804.017084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 O -0.401 6.401 3 C 0.235 3.765 4 C -0.121 4.121 5 C -0.552 4.552 6 H 0.050 0.950 7 C 0.037 3.963 8 N -0.885 5.885 9 Si 0.938 3.062 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.280 1.280 13 C -0.128 4.128 14 H 0.050 0.950 15 C -0.105 4.105 16 C -0.150 4.150 17 C 0.056 3.944 18 O -0.405 6.405 19 C 0.075 3.925 20 H 0.024 0.976 21 H 0.028 0.972 22 H 0.068 0.932 23 H 0.051 0.949 24 H 0.059 0.941 25 H 0.031 0.969 26 H 0.257 0.743 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.113 0.887 33 H 0.081 0.919 34 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.297 5.190 -8.300 9.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.321 6.321 3 C 0.197 3.803 4 C -0.178 4.178 5 C -0.590 4.590 6 H 0.068 0.932 7 C -0.165 4.165 8 N -0.522 5.522 9 Si 0.765 3.235 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.206 1.206 13 C -0.147 4.147 14 H 0.068 0.932 15 C -0.143 4.143 16 C -0.187 4.187 17 C -0.021 4.021 18 O -0.324 6.324 19 C -0.001 4.001 20 H 0.043 0.957 21 H 0.046 0.954 22 H 0.087 0.913 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.131 0.869 33 H 0.099 0.901 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.224 4.830 -8.318 9.621 hybrid contribution -0.396 0.556 1.494 1.643 sum -0.619 5.386 -6.823 8.715 Atomic orbital electron populations 1.22253 0.83509 1.00165 0.98461 1.87802 1.18316 1.31335 1.94641 1.19039 0.90908 0.80202 0.90166 1.21640 0.95866 0.99839 1.00501 1.21707 1.36918 1.08503 0.91849 0.93194 1.25600 0.94557 0.95197 1.01167 1.70122 1.39017 1.20293 1.22764 0.85834 0.78134 0.79067 0.80505 1.19376 1.21144 1.20630 1.22144 0.99506 0.96881 0.96198 0.93154 1.21531 1.00335 0.94887 0.97541 1.22205 1.01823 0.99855 0.94867 1.22765 0.97326 0.82856 0.99110 1.87833 1.72721 1.29757 1.42086 1.22542 0.99193 0.94541 0.83810 0.95745 0.95380 0.91307 0.93045 0.92253 0.95006 0.93348 0.91998 0.92495 0.88986 0.92045 0.92702 0.86928 0.90058 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.35 10.27 113.37 1.16 3.52 16 2 O -0.40 -20.36 9.12 -148.98 -1.36 -21.72 16 3 C 0.23 11.25 0.19 -11.54 0.00 11.25 16 4 C -0.12 -5.70 7.92 71.98 0.57 -5.13 16 5 C -0.55 -28.84 5.95 25.60 0.15 -28.69 16 6 H 0.05 2.62 6.74 -2.91 -0.02 2.60 16 7 C 0.04 2.00 5.24 84.66 0.44 2.44 16 8 N -0.88 -49.87 10.87 21.45 0.23 -49.64 16 9 Si 0.94 42.63 29.54 68.60 2.03 44.65 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 13 C -0.13 -5.22 1.35 -10.71 -0.01 -5.23 16 14 H 0.05 2.17 6.69 -2.38 -0.02 2.16 16 15 C -0.11 -3.78 4.71 30.71 0.14 -3.63 16 16 C -0.15 -4.18 6.14 30.68 0.19 -3.99 16 17 C 0.06 1.48 6.84 72.01 0.49 1.98 16 18 O -0.40 -13.84 10.77 -148.98 -1.60 -15.44 16 19 C 0.08 2.81 5.66 72.01 0.41 3.22 16 20 H 0.02 1.16 6.95 -2.38 -0.02 1.14 16 21 H 0.03 1.13 6.72 -2.39 -0.02 1.12 16 22 H 0.07 2.72 8.14 -2.39 -0.02 2.71 16 23 H 0.05 2.26 6.36 -2.39 -0.02 2.24 16 24 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 25 H 0.03 1.35 6.38 -2.39 -0.02 1.34 16 26 H 0.26 13.92 8.31 -92.71 -0.77 13.14 16 27 H 0.06 2.19 6.28 -2.39 -0.01 2.18 16 28 H 0.06 2.21 6.76 -2.38 -0.02 2.19 16 29 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.06 1.75 8.14 -2.38 -0.02 1.74 16 31 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.08 3.15 7.76 -2.39 -0.02 3.13 16 34 H 0.05 1.89 6.31 -2.39 -0.02 1.87 16 Total: -1.00 -59.21 257.93 3.92 -55.29 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 1.08 Total: 11.13 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 3.55 Total: -24.27 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: 0.23 Total: -49.64 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -2.96 Total: -37.16 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -59.21 3.92 -55.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272094.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.852 kcal (2) G-P(sol) polarization free energy of solvation -59.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds