Wall clock time and date at job start Mon Mar 30 2020 03:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00381 * 2 1 4 4 C 1.53003 * 109.46748 * 61.05490 * 3 2 1 5 5 C 1.50695 * 109.47215 * 181.05391 * 3 2 1 6 6 H 1.08001 * 119.99902 * 120.00682 * 5 3 2 7 7 C 1.37876 * 120.00293 * 299.99995 * 5 3 2 8 8 N 1.31524 * 119.99721 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00434 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46649 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46908 * 120.00114 * 9 7 5 12 12 H 1.48496 * 109.46976 * 240.00107 * 9 7 5 13 13 C 1.53001 * 109.46978 * 301.05794 * 3 2 1 14 14 H 1.08993 * 109.52409 * 59.91540 * 13 3 2 15 15 C 1.53168 * 109.52056 * 299.72351 * 13 3 2 16 16 C 1.53179 * 109.03643 * 183.11769 * 15 13 3 17 17 C 1.53089 * 109.16327 * 56.98077 * 16 15 13 18 18 O 1.42901 * 109.41330 * 302.38996 * 17 16 15 19 19 C 1.42906 * 114.09552 * 61.15988 * 18 17 16 20 20 H 1.08996 * 109.47005 * 64.89116 * 1 2 3 21 21 H 1.08999 * 109.47226 * 184.89711 * 1 2 3 22 22 H 1.09002 * 109.46831 * 304.89795 * 1 2 3 23 23 H 1.09003 * 109.47447 * 299.99942 * 4 3 2 24 24 H 1.09000 * 109.47360 * 60.00124 * 4 3 2 25 25 H 1.09001 * 109.47175 * 179.97438 * 4 3 2 26 26 H 0.96996 * 119.99661 * 179.97438 * 8 7 5 27 27 H 1.09007 * 109.54609 * 302.98044 * 15 13 3 28 28 H 1.08995 * 109.54769 * 63.15989 * 15 13 3 29 29 H 1.08997 * 109.52110 * 297.07438 * 16 15 13 30 30 H 1.09004 * 109.52337 * 176.88804 * 16 15 13 31 31 H 1.09002 * 109.47821 * 182.41321 * 17 16 15 32 32 H 1.08998 * 109.48461 * 62.37757 * 17 16 15 33 33 H 1.09005 * 109.47645 * 58.82615 * 19 18 17 34 34 H 1.09005 * 109.47954 * 178.85121 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5799 2.0553 1.2624 5 6 3.5123 1.1865 -0.0261 6 1 4.0739 1.6162 -0.8424 7 6 4.1697 0.5292 0.9921 8 7 3.4857 0.0055 1.9860 9 14 6.0315 0.3811 0.9594 10 1 6.5598 1.0490 -0.2572 11 1 6.6010 1.0308 2.1672 12 1 6.4137 -1.0538 0.9424 13 6 1.5379 2.0740 -1.2357 14 1 0.4514 2.1593 -1.2184 15 6 1.9740 1.3278 -2.5003 16 6 1.5642 2.1453 -3.7292 17 6 2.1861 3.5410 -3.6345 18 8 1.7645 4.1676 -2.4214 19 6 2.1608 3.4724 -1.2374 20 1 -0.3633 0.4361 -0.9305 21 1 -0.3633 -1.0239 0.0877 22 1 -0.3633 0.5880 0.8429 23 1 0.4935 2.1413 1.2813 24 1 1.9164 1.5077 2.1427 25 1 2.0237 3.0508 1.2627 26 1 3.9482 -0.4572 2.7022 27 1 3.0564 1.1988 -2.4926 28 1 1.4907 0.3514 -2.5325 29 1 0.4782 2.2320 -3.7633 30 1 1.9195 1.6486 -4.6321 31 1 1.8630 4.1413 -4.4850 32 1 3.2728 3.4560 -3.6412 33 1 3.2472 3.3866 -1.2127 34 1 1.8196 4.0235 -0.3609 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261272095.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:57 Heat of formation + Delta-G solvation = -99.970311 kcal Electronic energy + Delta-G solvation = -15845.915355 eV Core-core repulsion = 13357.830067 eV Total energy + Delta-G solvation = -2488.085288 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.13808 -36.85792 -33.08902 -32.55989 -31.18618 -27.96771 -26.19636 -24.67264 -24.09509 -23.24259 -20.07090 -18.92213 -16.71496 -15.80883 -15.15486 -14.80206 -14.43514 -14.13708 -13.76316 -13.34034 -13.13558 -13.03443 -12.14545 -11.98195 -11.57320 -11.09058 -11.01208 -10.83923 -10.61261 -10.55435 -10.41424 -10.18559 -10.05381 -9.69965 -9.48618 -8.78485 -8.74418 -8.40114 -7.89304 -5.99351 -4.14259 3.27599 3.36506 3.38779 4.39005 4.44736 5.06926 5.37462 5.44332 5.52780 5.64365 5.80826 5.94778 6.04036 6.10446 6.26203 6.30761 6.38019 6.40880 6.48287 6.56591 6.67161 6.75324 6.83561 6.94179 7.09258 7.12580 7.17666 7.71721 7.79415 8.10565 8.33089 8.72646 9.13912 9.55827 11.03434 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.028370 B = 0.012932 C = 0.010703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.707589 B = 2164.663278 C = 2615.524836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.356 6.356 3 C 0.246 3.754 4 C -0.167 4.167 5 C -0.514 4.514 6 H 0.066 0.934 7 C 0.080 3.920 8 N -0.857 5.857 9 Si 0.887 3.113 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.283 1.283 13 C -0.135 4.135 14 H 0.052 0.948 15 C -0.104 4.104 16 C -0.157 4.157 17 C 0.064 3.936 18 O -0.397 6.397 19 C 0.071 3.929 20 H 0.018 0.982 21 H 0.057 0.943 22 H 0.028 0.972 23 H 0.012 0.988 24 H 0.090 0.910 25 H 0.038 0.962 26 H 0.259 0.741 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.988 3.710 -6.355 7.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.274 6.274 3 C 0.208 3.792 4 C -0.224 4.224 5 C -0.551 4.551 6 H 0.084 0.916 7 C -0.125 4.125 8 N -0.493 5.493 9 Si 0.715 3.285 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.209 1.209 13 C -0.154 4.154 14 H 0.071 0.929 15 C -0.141 4.141 16 C -0.195 4.195 17 C -0.013 4.013 18 O -0.316 6.316 19 C -0.005 4.005 20 H 0.036 0.964 21 H 0.075 0.925 22 H 0.046 0.954 23 H 0.031 0.969 24 H 0.109 0.891 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.961 3.612 -6.173 7.741 hybrid contribution 0.807 -0.264 0.049 0.850 sum -2.155 3.348 -6.124 7.305 Atomic orbital electron populations 1.22510 0.87086 0.99839 0.97889 1.88362 1.14308 1.30632 1.94119 1.19025 0.92667 0.79984 0.87543 1.22405 0.96227 0.99973 1.03836 1.20907 0.88971 1.37558 1.07654 0.91631 1.25023 0.97946 0.94352 0.95205 1.69978 1.34827 1.34443 1.10024 0.86628 0.85962 0.77904 0.78024 1.19689 1.20986 1.20924 1.22269 0.98782 0.96081 0.98269 0.92940 1.21476 1.02390 0.97995 0.92286 1.22247 1.00908 0.96878 0.99436 1.22444 0.98008 0.93489 0.87382 1.87826 1.79095 1.50362 1.14346 1.22737 0.99666 0.92229 0.85829 0.96394 0.92476 0.95399 0.96864 0.89100 0.94298 0.93125 0.90812 0.91967 0.92148 0.91926 0.90186 0.93611 0.91836 0.89447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 10.18 101.05 1.03 1.54 16 2 O -0.36 -9.05 9.14 -35.23 -0.32 -9.37 16 3 C 0.25 5.93 0.18 -91.77 -0.02 5.91 16 4 C -0.17 -3.95 7.72 37.16 0.29 -3.66 16 5 C -0.51 -13.43 6.72 -34.44 -0.23 -13.66 16 6 H 0.07 1.69 5.67 -52.49 -0.30 1.39 16 7 C 0.08 2.16 5.24 -17.82 -0.09 2.07 16 8 N -0.86 -24.01 10.87 55.43 0.60 -23.41 16 9 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C -0.13 -2.82 1.32 -90.49 -0.12 -2.94 16 14 H 0.05 1.09 6.64 -51.93 -0.34 0.75 16 15 C -0.10 -2.03 4.91 -26.55 -0.13 -2.16 16 16 C -0.16 -2.50 6.14 -26.59 -0.16 -2.67 16 17 C 0.06 1.01 6.84 37.20 0.25 1.26 16 18 O -0.40 -7.44 10.77 -35.23 -0.38 -7.82 16 19 C 0.07 1.41 5.49 37.20 0.20 1.62 16 20 H 0.02 0.34 6.67 -51.93 -0.35 0.00 16 21 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 22 H 0.03 0.57 6.20 -51.93 -0.32 0.24 16 23 H 0.01 0.27 6.46 -51.93 -0.34 -0.06 16 24 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 25 H 0.04 0.86 6.49 -51.93 -0.34 0.53 16 26 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 27 H 0.07 1.54 6.52 -51.92 -0.34 1.21 16 28 H 0.06 1.25 7.80 -51.93 -0.40 0.85 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 1.32 6.55 -51.93 -0.34 0.98 16 34 H 0.09 1.70 6.58 -51.93 -0.34 1.36 16 LS Contribution 257.05 15.07 3.87 3.87 Total: -1.00 -28.37 257.05 -5.20 -33.57 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -4.97 Total: 0.15 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 1.02 Total: -12.69 kcal Atomic # 7 Polarization: -24.01 SS G_CDS: 0.60 Total: -23.41 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.70 Total: -17.19 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.37 -5.20 -33.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272095.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.403 kcal (2) G-P(sol) polarization free energy of solvation -28.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds