Wall clock time and date at job start Mon Mar 30 2020 03:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00381 * 2 1 4 4 C 1.53003 * 109.46748 * 61.05490 * 3 2 1 5 5 C 1.50695 * 109.47215 * 181.05391 * 3 2 1 6 6 H 1.08001 * 119.99902 * 120.00682 * 5 3 2 7 7 C 1.37876 * 120.00293 * 299.99995 * 5 3 2 8 8 N 1.31524 * 119.99721 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00434 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46649 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46908 * 120.00114 * 9 7 5 12 12 H 1.48496 * 109.46976 * 240.00107 * 9 7 5 13 13 C 1.53001 * 109.46978 * 301.05794 * 3 2 1 14 14 H 1.08993 * 109.52409 * 59.91540 * 13 3 2 15 15 C 1.53168 * 109.52056 * 299.72351 * 13 3 2 16 16 C 1.53179 * 109.03643 * 183.11769 * 15 13 3 17 17 C 1.53089 * 109.16327 * 56.98077 * 16 15 13 18 18 O 1.42901 * 109.41330 * 302.38996 * 17 16 15 19 19 C 1.42906 * 114.09552 * 61.15988 * 18 17 16 20 20 H 1.08996 * 109.47005 * 64.89116 * 1 2 3 21 21 H 1.08999 * 109.47226 * 184.89711 * 1 2 3 22 22 H 1.09002 * 109.46831 * 304.89795 * 1 2 3 23 23 H 1.09003 * 109.47447 * 299.99942 * 4 3 2 24 24 H 1.09000 * 109.47360 * 60.00124 * 4 3 2 25 25 H 1.09001 * 109.47175 * 179.97438 * 4 3 2 26 26 H 0.96996 * 119.99661 * 179.97438 * 8 7 5 27 27 H 1.09007 * 109.54609 * 302.98044 * 15 13 3 28 28 H 1.08995 * 109.54769 * 63.15989 * 15 13 3 29 29 H 1.08997 * 109.52110 * 297.07438 * 16 15 13 30 30 H 1.09004 * 109.52337 * 176.88804 * 16 15 13 31 31 H 1.09002 * 109.47821 * 182.41321 * 17 16 15 32 32 H 1.08998 * 109.48461 * 62.37757 * 17 16 15 33 33 H 1.09005 * 109.47645 * 58.82615 * 19 18 17 34 34 H 1.09005 * 109.47954 * 178.85121 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5799 2.0553 1.2624 5 6 3.5123 1.1865 -0.0261 6 1 4.0739 1.6162 -0.8424 7 6 4.1697 0.5292 0.9921 8 7 3.4857 0.0055 1.9860 9 14 6.0315 0.3811 0.9594 10 1 6.5598 1.0490 -0.2572 11 1 6.6010 1.0308 2.1672 12 1 6.4137 -1.0538 0.9424 13 6 1.5379 2.0740 -1.2357 14 1 0.4514 2.1593 -1.2184 15 6 1.9740 1.3278 -2.5003 16 6 1.5642 2.1453 -3.7292 17 6 2.1861 3.5410 -3.6345 18 8 1.7645 4.1676 -2.4214 19 6 2.1608 3.4724 -1.2374 20 1 -0.3633 0.4361 -0.9305 21 1 -0.3633 -1.0239 0.0877 22 1 -0.3633 0.5880 0.8429 23 1 0.4935 2.1413 1.2813 24 1 1.9164 1.5077 2.1427 25 1 2.0237 3.0508 1.2627 26 1 3.9482 -0.4572 2.7022 27 1 3.0564 1.1988 -2.4926 28 1 1.4907 0.3514 -2.5325 29 1 0.4782 2.2320 -3.7633 30 1 1.9195 1.6486 -4.6321 31 1 1.8630 4.1413 -4.4850 32 1 3.2728 3.4560 -3.6412 33 1 3.2472 3.3866 -1.2127 34 1 1.8196 4.0235 -0.3609 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261272095.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:56 Heat of formation + Delta-G solvation = -118.071069 kcal Electronic energy + Delta-G solvation = -15846.700263 eV Core-core repulsion = 13357.830067 eV Total energy + Delta-G solvation = -2488.870196 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.72124 -38.54339 -34.92515 -34.21579 -32.82463 -29.67747 -28.02950 -26.55430 -25.60336 -24.78843 -21.60662 -20.71118 -18.53790 -17.36456 -16.72709 -16.60875 -16.13958 -15.71060 -15.55483 -14.99730 -14.70670 -14.56473 -13.94381 -13.43521 -13.36132 -12.85138 -12.75432 -12.54119 -12.37345 -12.23799 -12.09914 -11.92912 -11.67435 -11.34686 -11.14946 -10.69660 -10.37087 -10.21573 -9.70507 -8.01095 -6.20730 1.41785 1.45320 1.54382 2.44921 3.04021 3.14160 3.83587 4.02258 4.06338 4.12547 4.32335 4.45930 4.56958 4.63771 4.71484 4.75014 4.84397 4.90212 4.95025 4.97623 5.02320 5.13310 5.13848 5.26285 5.30615 5.41360 5.57850 5.71542 6.11657 6.35932 6.40565 6.74468 7.28939 7.52857 9.01024 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.028370 B = 0.012932 C = 0.010703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.707589 B = 2164.663278 C = 2615.524836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.390 6.390 3 C 0.238 3.762 4 C -0.160 4.160 5 C -0.520 4.520 6 H 0.064 0.936 7 C 0.032 3.968 8 N -0.888 5.888 9 Si 0.945 3.055 10 H -0.265 1.265 11 H -0.281 1.281 12 H -0.287 1.287 13 C -0.129 4.129 14 H 0.055 0.945 15 C -0.102 4.102 16 C -0.148 4.148 17 C 0.056 3.944 18 O -0.404 6.404 19 C 0.080 3.920 20 H 0.034 0.966 21 H 0.072 0.928 22 H 0.028 0.972 23 H 0.028 0.972 24 H 0.060 0.940 25 H 0.044 0.956 26 H 0.257 0.743 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.184 4.417 -7.914 9.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.309 6.309 3 C 0.200 3.800 4 C -0.217 4.217 5 C -0.558 4.558 6 H 0.082 0.918 7 C -0.170 4.170 8 N -0.525 5.525 9 Si 0.771 3.229 10 H -0.189 1.189 11 H -0.207 1.207 12 H -0.213 1.213 13 C -0.148 4.148 14 H 0.073 0.927 15 C -0.139 4.139 16 C -0.186 4.186 17 C -0.020 4.020 18 O -0.323 6.323 19 C 0.003 3.997 20 H 0.053 0.947 21 H 0.091 0.909 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.132 0.868 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.160 4.331 -7.747 9.421 hybrid contribution 0.809 -0.490 0.492 1.066 sum -2.350 3.841 -7.255 8.539 Atomic orbital electron populations 1.22640 0.84894 1.01126 0.98702 1.88265 1.16832 1.31396 1.94431 1.19069 0.91900 0.80030 0.88989 1.22286 0.97138 0.99740 1.02584 1.21210 0.90528 1.36825 1.07218 0.91800 1.25712 1.01735 0.94453 0.95118 1.70113 1.36162 1.35566 1.10659 0.85723 0.81501 0.77472 0.78197 1.18905 1.20667 1.21304 1.22144 0.98786 0.96367 0.97479 0.92676 1.21404 1.00952 0.98044 0.93545 1.22194 1.01390 0.96489 0.98514 1.22734 0.98311 0.93873 0.87124 1.87819 1.79171 1.50549 1.14768 1.22531 0.98634 0.91726 0.86791 0.94729 0.90905 0.95380 0.95354 0.92090 0.93685 0.93413 0.92771 0.93090 0.91434 0.89360 0.86766 0.93476 0.93209 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.95 10.18 113.37 1.15 2.10 16 2 O -0.39 -19.82 9.14 -148.98 -1.36 -21.19 16 3 C 0.24 11.44 0.18 -11.54 0.00 11.44 16 4 C -0.16 -7.57 7.72 71.98 0.56 -7.01 16 5 C -0.52 -27.30 6.72 25.60 0.17 -27.13 16 6 H 0.06 3.29 5.67 -2.91 -0.02 3.27 16 7 C 0.03 1.74 5.24 84.65 0.44 2.18 16 8 N -0.89 -50.58 10.87 21.45 0.23 -50.35 16 9 Si 0.94 42.81 29.54 68.60 2.03 44.83 16 10 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 13 C -0.13 -5.23 1.32 -10.71 -0.01 -5.25 16 14 H 0.05 2.19 6.64 -2.39 -0.02 2.18 16 15 C -0.10 -3.84 4.91 30.71 0.15 -3.69 16 16 C -0.15 -4.27 6.14 30.68 0.19 -4.09 16 17 C 0.06 1.59 6.84 72.01 0.49 2.08 16 18 O -0.40 -14.14 10.77 -148.98 -1.60 -15.74 16 19 C 0.08 3.06 5.49 72.01 0.40 3.45 16 20 H 0.03 1.27 6.67 -2.39 -0.02 1.25 16 21 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 22 H 0.03 1.11 6.20 -2.39 -0.01 1.10 16 23 H 0.03 1.20 6.46 -2.39 -0.02 1.19 16 24 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 25 H 0.04 2.00 6.49 -2.39 -0.02 1.99 16 26 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 27 H 0.05 2.23 6.52 -2.38 -0.02 2.21 16 28 H 0.05 2.00 7.80 -2.39 -0.02 1.98 16 29 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.05 2.04 6.55 -2.38 -0.02 2.02 16 34 H 0.09 3.31 6.58 -2.38 -0.02 3.30 16 Total: -1.00 -59.83 257.05 3.91 -55.92 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 1.08 Total: 12.42 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 3.54 Total: -25.90 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.23 Total: -50.35 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -2.97 Total: -36.93 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -59.83 3.91 -55.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272095.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.153 kcal (2) G-P(sol) polarization free energy of solvation -59.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds