Wall clock time and date at job start Mon Mar 30 2020 03:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.46855 * 2 1 4 4 H 1.08004 * 119.99963 * 120.00005 * 3 2 1 5 5 C 1.37878 * 120.00450 * 299.99780 * 3 2 1 6 6 N 1.31517 * 119.99487 * 0.02562 * 5 3 2 7 7 Si 1.86797 * 120.00273 * 180.02562 * 5 3 2 8 8 H 1.48504 * 109.47262 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47042 * 120.00067 * 7 5 3 10 10 H 1.48506 * 109.47110 * 239.99920 * 7 5 3 11 11 C 1.52995 * 109.47182 * 239.99846 * 2 1 3 12 12 O 1.42898 * 109.47016 * 180.02562 * 11 2 1 13 13 C 1.53001 * 109.46890 * 119.99968 * 2 1 3 14 14 C 1.53180 * 109.54154 * 300.44154 * 13 2 1 15 15 C 1.53282 * 109.05935 * 176.85401 * 14 13 2 16 16 O 1.42903 * 109.46136 * 302.44382 * 15 14 13 17 17 C 1.42906 * 114.09927 * 61.16022 * 16 15 14 18 18 C 1.53092 * 109.41376 * 298.84410 * 17 16 15 19 19 H 1.08998 * 109.47277 * 300.00128 * 1 2 3 20 20 H 1.09003 * 109.46628 * 60.00159 * 1 2 3 21 21 H 1.08999 * 109.47163 * 179.97438 * 1 2 3 22 22 H 0.96999 * 119.99314 * 180.02562 * 6 5 3 23 23 H 1.09001 * 109.47252 * 300.02291 * 11 2 1 24 24 H 1.09006 * 109.47053 * 60.02245 * 11 2 1 25 25 H 0.96703 * 114.00521 * 179.97438 * 12 11 2 26 26 H 1.08996 * 109.54088 * 180.26225 * 13 2 1 27 27 H 1.09003 * 109.52090 * 296.83830 * 14 13 2 28 28 H 1.08994 * 109.52132 * 57.03476 * 14 13 2 29 29 H 1.08999 * 109.45967 * 182.44818 * 15 14 13 30 30 H 1.09001 * 109.47193 * 62.44667 * 15 14 13 31 31 H 1.09000 * 109.47868 * 178.85906 * 17 16 15 32 32 H 1.09005 * 109.48619 * 58.82780 * 17 16 15 33 33 H 1.09004 * 109.52165 * 297.70217 * 18 17 16 34 34 H 1.08994 * 109.57246 * 177.54560 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 1 2.6532 1.7741 0.8100 5 6 1.6993 2.2698 -1.0341 6 7 0.9428 1.8397 -2.0202 7 14 2.3224 4.0308 -1.0344 8 1 3.1473 4.2642 0.1783 9 1 3.1472 4.2637 -2.2471 10 1 1.1677 4.9645 -1.0342 11 6 2.0400 -0.7213 -1.2492 12 8 3.4690 -0.7218 -1.2488 13 6 2.0400 -0.7213 1.2493 14 6 1.5212 -0.0068 2.5010 15 6 1.9725 -0.7828 3.7435 16 8 1.4928 -2.1267 3.6658 17 6 1.9830 -2.8570 2.5395 18 6 1.5321 -2.1664 1.2498 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 0.7088 2.4370 -2.7478 23 1 1.6764 -1.7488 -1.2494 24 1 1.6770 -0.2072 -2.1392 25 1 3.8624 -1.1638 -2.0136 26 1 3.1299 -0.7179 1.2528 27 1 1.9232 1.0058 2.5354 28 1 0.4323 0.0331 2.4726 29 1 1.5703 -0.3043 4.6364 30 1 3.0614 -0.7879 3.7930 31 1 1.5882 -3.8727 2.5652 32 1 3.0720 -2.8893 2.5730 33 1 0.4434 -2.1698 1.1962 34 1 1.9408 -2.6965 0.3896 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261298252.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:02 Heat of formation + Delta-G solvation = -108.753210 kcal Electronic energy + Delta-G solvation = -15736.390560 eV Core-core repulsion = 13247.924417 eV Total energy + Delta-G solvation = -2488.466143 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.10201 -36.61332 -34.20087 -32.34072 -30.53750 -29.45539 -25.36238 -24.74600 -23.95669 -22.61934 -20.22222 -18.01055 -16.10700 -15.92819 -15.58765 -15.45581 -14.59705 -14.17769 -13.77545 -13.45201 -12.92503 -12.69262 -11.92015 -11.70970 -11.56353 -11.20568 -10.92916 -10.66866 -10.62239 -10.44100 -10.19520 -10.03247 -9.96009 -9.49597 -9.23633 -8.82183 -8.52930 -8.46847 -8.18493 -5.91209 -3.96955 3.32022 3.40114 3.44372 4.33914 4.47643 5.34904 5.43734 5.55623 5.62318 5.66853 5.73705 5.80905 5.93221 6.12081 6.21051 6.46727 6.53934 6.57426 6.70903 6.82369 6.94794 7.01057 7.10731 7.19336 7.32232 7.49769 7.66169 7.73198 7.91983 8.19996 8.49752 8.88008 9.00640 9.66082 11.10325 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.036641 B = 0.011044 C = 0.009868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.996416 B = 2534.750740 C = 2836.905508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.079 3.921 3 C -0.478 4.478 4 H 0.055 0.945 5 C 0.060 3.940 6 N -0.897 5.897 7 Si 0.890 3.110 8 H -0.275 1.275 9 H -0.287 1.287 10 H -0.287 1.287 11 C 0.084 3.916 12 O -0.565 6.565 13 C -0.067 4.067 14 C -0.143 4.143 15 C 0.059 3.941 16 O -0.393 6.393 17 C 0.063 3.937 18 C -0.154 4.154 19 H 0.035 0.965 20 H 0.082 0.918 21 H 0.011 0.989 22 H 0.257 0.743 23 H -0.003 1.003 24 H 0.074 0.926 25 H 0.347 0.653 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.081 0.919 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.167 -6.073 4.528 7.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.079 3.921 3 C -0.516 4.516 4 H 0.073 0.927 5 C -0.139 4.139 6 N -0.537 5.537 7 Si 0.719 3.281 8 H -0.200 1.200 9 H -0.213 1.213 10 H -0.213 1.213 11 C 0.006 3.994 12 O -0.366 6.366 13 C -0.086 4.086 14 C -0.180 4.180 15 C -0.018 4.018 16 O -0.312 6.312 17 C -0.014 4.014 18 C -0.191 4.191 19 H 0.054 0.946 20 H 0.101 0.899 21 H 0.030 0.970 22 H 0.067 0.933 23 H 0.015 0.985 24 H 0.092 0.908 25 H 0.189 0.811 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.858 -5.737 5.082 7.712 hybrid contribution 0.580 0.804 -0.936 1.363 sum 1.438 -4.933 4.146 6.602 Atomic orbital electron populations 1.21865 0.97545 0.97264 1.02594 1.18070 0.91872 0.93986 0.88181 1.21038 1.29545 0.94632 1.06408 0.92685 1.24877 0.95164 0.98274 0.95571 1.69775 1.37840 1.35224 1.10889 0.86569 0.78467 0.85246 0.77849 1.19965 1.21295 1.21348 1.22499 0.78911 0.94752 1.03222 1.86567 1.21859 1.81158 1.47052 1.21096 0.99503 0.92058 0.95920 1.22260 1.01814 0.99937 0.94008 1.22697 0.97662 0.82519 0.98908 1.87818 1.72219 1.24995 1.46142 1.22554 0.97592 0.94794 0.86440 1.22370 1.01792 0.98188 0.96762 0.94567 0.89931 0.96961 0.93331 0.98484 0.90754 0.81053 0.91985 0.90415 0.91416 0.89954 0.94011 0.90087 0.93947 0.91369 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 7.55 37.16 0.28 -2.87 16 2 C 0.08 1.88 0.14 -155.66 -0.02 1.86 16 3 C -0.48 -12.73 6.97 -34.44 -0.24 -12.97 16 4 H 0.05 1.49 6.75 -52.48 -0.35 1.14 16 5 C 0.06 1.63 5.15 -17.82 -0.09 1.54 16 6 N -0.90 -24.55 9.35 55.43 0.52 -24.03 16 7 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 8 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 C 0.08 1.95 5.34 37.16 0.20 2.15 16 12 O -0.56 -12.71 12.61 -35.23 -0.44 -13.16 16 13 C -0.07 -1.41 1.44 -90.43 -0.13 -1.54 16 14 C -0.14 -2.77 4.85 -26.49 -0.13 -2.90 16 15 C 0.06 0.98 6.85 37.30 0.26 1.24 16 16 O -0.39 -6.92 10.77 -35.23 -0.38 -7.30 16 17 C 0.06 1.02 6.84 37.20 0.25 1.27 16 18 C -0.15 -2.80 4.70 -26.59 -0.12 -2.93 16 19 H 0.04 0.82 6.36 -51.93 -0.33 0.49 16 20 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 21 H 0.01 0.25 6.37 -51.93 -0.33 -0.08 16 22 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 23 H 0.00 -0.06 6.51 -51.93 -0.34 -0.40 16 24 H 0.07 1.92 6.07 -51.93 -0.32 1.61 16 25 H 0.35 6.07 9.12 45.56 0.42 6.48 16 26 H 0.06 1.40 7.69 -51.93 -0.40 1.00 16 27 H 0.08 1.58 6.77 -51.93 -0.35 1.23 16 28 H 0.07 1.35 6.28 -51.93 -0.33 1.02 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.28 6.29 -51.93 -0.33 0.95 16 34 H 0.07 1.17 6.61 -51.93 -0.34 0.83 16 LS Contribution 255.19 15.07 3.85 3.85 Total: -1.00 -28.74 255.19 -5.37 -34.11 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -4.14 Total: 5.31 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: 0.25 Total: -15.15 kcal Atomic # 7 Polarization: -24.55 SS G_CDS: 0.52 Total: -24.03 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.82 Total: -20.46 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.74 -5.37 -34.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261298252.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.647 kcal (2) G-P(sol) polarization free energy of solvation -28.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds