Wall clock time and date at job start Mon Mar 30 2020 03:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.46855 * 2 1 4 4 H 1.08004 * 119.99963 * 120.00005 * 3 2 1 5 5 C 1.37878 * 120.00450 * 299.99780 * 3 2 1 6 6 N 1.31517 * 119.99487 * 0.02562 * 5 3 2 7 7 Si 1.86797 * 120.00273 * 180.02562 * 5 3 2 8 8 H 1.48504 * 109.47262 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47042 * 120.00067 * 7 5 3 10 10 H 1.48506 * 109.47110 * 239.99920 * 7 5 3 11 11 C 1.52995 * 109.47182 * 239.99846 * 2 1 3 12 12 O 1.42898 * 109.47016 * 180.02562 * 11 2 1 13 13 C 1.53001 * 109.46890 * 119.99968 * 2 1 3 14 14 C 1.53180 * 109.54154 * 300.44154 * 13 2 1 15 15 C 1.53282 * 109.05935 * 176.85401 * 14 13 2 16 16 O 1.42903 * 109.46136 * 302.44382 * 15 14 13 17 17 C 1.42906 * 114.09927 * 61.16022 * 16 15 14 18 18 C 1.53092 * 109.41376 * 298.84410 * 17 16 15 19 19 H 1.08998 * 109.47277 * 300.00128 * 1 2 3 20 20 H 1.09003 * 109.46628 * 60.00159 * 1 2 3 21 21 H 1.08999 * 109.47163 * 179.97438 * 1 2 3 22 22 H 0.96999 * 119.99314 * 180.02562 * 6 5 3 23 23 H 1.09001 * 109.47252 * 300.02291 * 11 2 1 24 24 H 1.09006 * 109.47053 * 60.02245 * 11 2 1 25 25 H 0.96703 * 114.00521 * 179.97438 * 12 11 2 26 26 H 1.08996 * 109.54088 * 180.26225 * 13 2 1 27 27 H 1.09003 * 109.52090 * 296.83830 * 14 13 2 28 28 H 1.08994 * 109.52132 * 57.03476 * 14 13 2 29 29 H 1.08999 * 109.45967 * 182.44818 * 15 14 13 30 30 H 1.09001 * 109.47193 * 62.44667 * 15 14 13 31 31 H 1.09000 * 109.47868 * 178.85906 * 17 16 15 32 32 H 1.09005 * 109.48619 * 58.82780 * 17 16 15 33 33 H 1.09004 * 109.52165 * 297.70217 * 18 17 16 34 34 H 1.08994 * 109.57246 * 177.54560 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 1 2.6532 1.7741 0.8100 5 6 1.6993 2.2698 -1.0341 6 7 0.9428 1.8397 -2.0202 7 14 2.3224 4.0308 -1.0344 8 1 3.1473 4.2642 0.1783 9 1 3.1472 4.2637 -2.2471 10 1 1.1677 4.9645 -1.0342 11 6 2.0400 -0.7213 -1.2492 12 8 3.4690 -0.7218 -1.2488 13 6 2.0400 -0.7213 1.2493 14 6 1.5212 -0.0068 2.5010 15 6 1.9725 -0.7828 3.7435 16 8 1.4928 -2.1267 3.6658 17 6 1.9830 -2.8570 2.5395 18 6 1.5321 -2.1664 1.2498 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 0.7088 2.4370 -2.7478 23 1 1.6764 -1.7488 -1.2494 24 1 1.6770 -0.2072 -2.1392 25 1 3.8624 -1.1638 -2.0136 26 1 3.1299 -0.7179 1.2528 27 1 1.9232 1.0058 2.5354 28 1 0.4323 0.0331 2.4726 29 1 1.5703 -0.3043 4.6364 30 1 3.0614 -0.7879 3.7930 31 1 1.5882 -3.8727 2.5652 32 1 3.0720 -2.8893 2.5730 33 1 0.4434 -2.1698 1.1962 34 1 1.9408 -2.6965 0.3896 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261298252.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:02 Heat of formation + Delta-G solvation = -128.873793 kcal Electronic energy + Delta-G solvation = -15737.263054 eV Core-core repulsion = 13247.924417 eV Total energy + Delta-G solvation = -2489.338637 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.61532 -38.27307 -35.95254 -34.22186 -31.92972 -31.20811 -27.33549 -26.57374 -25.49989 -24.09788 -21.83163 -19.74965 -17.97228 -17.71135 -17.23807 -16.82074 -16.39639 -15.65987 -15.37972 -15.20945 -14.56267 -14.32205 -13.69209 -13.51243 -13.05577 -12.91136 -12.79033 -12.52631 -12.40422 -12.13341 -11.90020 -11.81263 -11.56239 -11.17135 -10.83831 -10.62034 -10.38776 -10.12446 -10.11254 -7.94937 -6.06048 1.38951 1.42863 1.51582 2.47991 3.06188 3.28244 3.94070 4.07793 4.11997 4.23308 4.26352 4.44888 4.61936 4.70114 4.75903 4.86450 4.89668 4.96804 5.03148 5.20244 5.27731 5.35067 5.38069 5.47453 5.50119 5.66132 5.73718 6.02941 6.28668 6.34635 6.52334 6.92900 7.30995 7.58632 9.03464 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.036641 B = 0.011044 C = 0.009868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.996416 B = 2534.750740 C = 2836.905508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.069 3.931 3 C -0.489 4.489 4 H 0.041 0.959 5 C 0.019 3.981 6 N -0.912 5.912 7 Si 0.938 3.062 8 H -0.275 1.275 9 H -0.288 1.288 10 H -0.284 1.284 11 C 0.091 3.909 12 O -0.580 6.580 13 C -0.063 4.063 14 C -0.140 4.140 15 C 0.064 3.936 16 O -0.400 6.400 17 C 0.063 3.937 18 C -0.148 4.148 19 H 0.032 0.968 20 H 0.056 0.944 21 H 0.031 0.969 22 H 0.255 0.745 23 H 0.019 0.981 24 H 0.046 0.954 25 H 0.369 0.631 26 H 0.043 0.957 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.050 0.950 31 H 0.110 0.890 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 -7.034 5.433 9.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.068 3.932 3 C -0.528 4.528 4 H 0.060 0.940 5 C -0.179 4.179 6 N -0.553 5.553 7 Si 0.766 3.234 8 H -0.199 1.199 9 H -0.214 1.214 10 H -0.210 1.210 11 C 0.013 3.987 12 O -0.384 6.384 13 C -0.082 4.082 14 C -0.177 4.177 15 C -0.013 4.013 16 O -0.319 6.319 17 C -0.013 4.013 18 C -0.185 4.185 19 H 0.051 0.949 20 H 0.074 0.926 21 H 0.050 0.950 22 H 0.065 0.935 23 H 0.036 0.964 24 H 0.064 0.936 25 H 0.215 0.785 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.123 0.877 30 H 0.068 0.932 31 H 0.128 0.872 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.141 -6.708 5.981 9.059 hybrid contribution 0.522 1.089 -1.250 1.738 sum 1.663 -5.618 4.731 7.531 Atomic orbital electron populations 1.21712 0.97424 0.98004 1.01061 1.18155 0.91991 0.93065 0.89965 1.21272 1.29218 0.96408 1.05858 0.94030 1.25449 0.95669 1.01104 0.95631 1.69900 1.38419 1.35868 1.11087 0.85807 0.77966 0.82062 0.77528 1.19925 1.21400 1.21000 1.22293 0.79325 0.95425 1.01649 1.86506 1.21467 1.81782 1.48629 1.20965 0.98232 0.93818 0.95166 1.22188 1.01099 0.99459 0.94994 1.22702 0.98244 0.82108 0.98231 1.87821 1.72522 1.25080 1.46523 1.22670 0.98272 0.95630 0.84724 1.22299 1.01359 0.96462 0.98420 0.94873 0.92556 0.95018 0.93548 0.96354 0.93615 0.78546 0.93847 0.92083 0.92204 0.87686 0.93217 0.87229 0.93134 0.91797 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.77 7.55 71.98 0.54 -5.22 16 2 C 0.07 3.23 0.14 -52.93 -0.01 3.23 16 3 C -0.49 -26.23 6.97 25.60 0.18 -26.06 16 4 H 0.04 2.29 6.75 -2.91 -0.02 2.27 16 5 C 0.02 1.02 5.15 84.65 0.44 1.45 16 6 N -0.91 -50.41 9.35 21.45 0.20 -50.20 16 7 Si 0.94 44.13 29.54 68.60 2.03 46.15 16 8 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 9 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 11 C 0.09 4.17 5.34 71.98 0.38 4.56 16 12 O -0.58 -25.56 12.61 -148.98 -1.88 -27.44 16 13 C -0.06 -2.58 1.44 -10.67 -0.02 -2.59 16 14 C -0.14 -5.29 4.85 30.75 0.15 -5.14 16 15 C 0.06 1.98 6.85 72.08 0.49 2.47 16 16 O -0.40 -12.89 10.77 -148.98 -1.60 -14.50 16 17 C 0.06 1.84 6.84 72.01 0.49 2.33 16 18 C -0.15 -5.05 4.70 30.68 0.14 -4.91 16 19 H 0.03 1.50 6.36 -2.39 -0.02 1.48 16 20 H 0.06 2.91 6.07 -2.39 -0.01 2.89 16 21 H 0.03 1.30 6.37 -2.39 -0.02 1.28 16 22 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 23 H 0.02 0.76 6.51 -2.39 -0.02 0.75 16 24 H 0.05 2.37 6.07 -2.38 -0.01 2.36 16 25 H 0.37 12.41 9.12 -74.06 -0.68 11.73 16 26 H 0.04 1.92 7.69 -2.39 -0.02 1.90 16 27 H 0.06 2.48 6.77 -2.39 -0.02 2.46 16 28 H 0.06 2.33 6.28 -2.39 -0.02 2.32 16 29 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.06 2.24 6.29 -2.38 -0.02 2.22 16 34 H 0.07 2.30 6.61 -2.39 -0.02 2.29 16 Total: -1.00 -60.06 255.19 1.97 -58.10 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.42 Total: 17.77 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: 2.80 Total: -29.88 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.20 Total: -50.20 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -3.48 Total: -41.94 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -60.06 1.97 -58.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261298252.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.778 kcal (2) G-P(sol) polarization free energy of solvation -60.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds