Wall clock time and date at job start Mon Mar 30 2020 03:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47166 * 2 1 4 4 H 1.07999 * 119.99540 * 240.00557 * 3 2 1 5 5 C 1.37872 * 119.99834 * 60.00106 * 3 2 1 6 6 N 1.31511 * 120.00144 * 359.97438 * 5 3 2 7 7 Si 1.86803 * 119.99807 * 180.02562 * 5 3 2 8 8 H 1.48497 * 109.47068 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.47285 * 119.99937 * 7 5 3 10 10 H 1.48500 * 109.47091 * 239.99971 * 7 5 3 11 11 C 1.53000 * 109.47053 * 119.99963 * 2 1 3 12 12 O 1.42897 * 109.46799 * 180.18020 * 11 2 1 13 13 C 1.52999 * 109.46811 * 240.00049 * 2 1 3 14 14 C 1.53174 * 109.54697 * 59.50895 * 13 2 1 15 15 C 1.53087 * 109.16850 * 183.15223 * 14 13 2 16 16 O 1.42902 * 109.41803 * 57.60451 * 15 14 13 17 17 C 1.42906 * 114.09879 * 298.84900 * 16 15 14 18 18 C 1.53097 * 109.41497 * 61.15247 * 17 16 15 19 19 H 1.09004 * 109.47453 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47042 * 300.00192 * 1 2 3 21 21 H 1.09002 * 109.47469 * 59.99783 * 1 2 3 22 22 H 0.97004 * 119.99976 * 180.02562 * 6 5 3 23 23 H 1.08995 * 109.47251 * 300.17777 * 11 2 1 24 24 H 1.09000 * 109.47160 * 60.18334 * 11 2 1 25 25 H 0.96701 * 113.99981 * 180.02562 * 12 11 2 26 26 H 1.09002 * 109.54213 * 179.77715 * 13 2 1 27 27 H 1.09000 * 109.52335 * 63.24346 * 14 13 2 28 28 H 1.09001 * 109.52388 * 303.05739 * 14 13 2 29 29 H 1.09005 * 109.48140 * 297.62841 * 15 14 13 30 30 H 1.08993 * 109.48816 * 177.59057 * 15 14 13 31 31 H 1.08994 * 109.48558 * 181.13822 * 17 16 15 32 32 H 1.08997 * 109.48081 * 301.17464 * 17 16 15 33 33 H 1.08995 * 109.52540 * 62.29848 * 18 17 16 34 34 H 1.08998 * 109.52228 * 182.42486 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 1 2.6532 1.7740 -0.8101 5 6 1.6993 2.2697 1.0341 6 7 0.9428 1.8398 2.0202 7 14 2.3214 4.0311 1.0337 8 1 3.1454 4.2648 -0.1794 9 1 1.1661 4.9642 1.0339 10 1 3.1466 4.2649 2.2459 11 6 2.0400 -0.7212 1.2493 12 8 3.4689 -0.7175 1.2513 13 6 2.0399 -0.7212 -1.2493 14 6 1.5202 -0.0077 -2.5010 15 6 1.9696 -0.7809 -3.7435 16 8 1.4893 -2.1246 -3.6663 17 6 1.9803 -2.8561 -2.5411 18 6 1.5312 -2.1661 -1.2503 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 0.7082 2.4372 2.7475 23 1 1.6741 -0.2093 2.1392 24 1 1.6793 -1.7499 1.2476 25 1 3.8623 -1.1594 2.0163 26 1 3.1299 -0.7185 -1.2525 27 1 1.9226 1.0047 -2.5367 28 1 0.4313 0.0330 -2.4715 29 1 3.0584 -0.7866 -3.7941 30 1 1.5666 -0.3016 -4.6356 31 1 1.5850 -3.8715 -2.5670 32 1 3.0692 -2.8887 -2.5759 33 1 0.4426 -2.1690 -1.1954 34 1 1.9406 -2.6980 -0.3915 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261298254.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:04 Heat of formation + Delta-G solvation = -108.721762 kcal Electronic energy + Delta-G solvation = -15736.788857 eV Core-core repulsion = 13248.324078 eV Total energy + Delta-G solvation = -2488.464779 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.10838 -36.61340 -34.20078 -32.34088 -30.54753 -29.45713 -25.36239 -24.74591 -23.95974 -22.61732 -20.22130 -18.01131 -16.10731 -15.92717 -15.58962 -15.45738 -14.59772 -14.17665 -13.77650 -13.45314 -12.92556 -12.69376 -11.91904 -11.71151 -11.56552 -11.20623 -10.92893 -10.66827 -10.62186 -10.44007 -10.19496 -10.03280 -9.95879 -9.49655 -9.23677 -8.82066 -8.52978 -8.46895 -8.18508 -5.91109 -3.96873 3.32074 3.40166 3.44427 4.33858 4.47703 5.35020 5.43636 5.55543 5.62316 5.66964 5.74144 5.81071 5.93067 6.12056 6.20994 6.46691 6.53900 6.57448 6.70846 6.82360 6.94782 7.00904 7.10724 7.19300 7.32210 7.49777 7.66157 7.73196 7.91971 8.20001 8.49740 8.88080 9.00739 9.66188 11.10423 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.036640 B = 0.011045 C = 0.009868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.014882 B = 2534.397428 C = 2836.815436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.079 3.921 3 C -0.478 4.478 4 H 0.055 0.945 5 C 0.060 3.940 6 N -0.897 5.897 7 Si 0.890 3.110 8 H -0.275 1.275 9 H -0.287 1.287 10 H -0.287 1.287 11 C 0.084 3.916 12 O -0.565 6.565 13 C -0.067 4.067 14 C -0.143 4.143 15 C 0.059 3.941 16 O -0.393 6.393 17 C 0.063 3.937 18 C -0.154 4.154 19 H 0.011 0.989 20 H 0.082 0.918 21 H 0.035 0.965 22 H 0.257 0.743 23 H 0.074 0.926 24 H -0.003 1.003 25 H 0.347 0.653 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.163 -6.077 -4.531 7.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.079 3.921 3 C -0.516 4.516 4 H 0.073 0.927 5 C -0.139 4.139 6 N -0.537 5.537 7 Si 0.719 3.281 8 H -0.200 1.200 9 H -0.213 1.213 10 H -0.213 1.213 11 C 0.006 3.994 12 O -0.366 6.366 13 C -0.086 4.086 14 C -0.180 4.180 15 C -0.018 4.018 16 O -0.312 6.312 17 C -0.014 4.014 18 C -0.191 4.191 19 H 0.030 0.970 20 H 0.101 0.899 21 H 0.054 0.946 22 H 0.067 0.933 23 H 0.092 0.908 24 H 0.015 0.985 25 H 0.189 0.811 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.853 -5.740 -5.085 7.716 hybrid contribution 0.580 0.804 0.935 1.363 sum 1.434 -4.936 -4.150 6.607 Atomic orbital electron populations 1.21865 0.97545 0.97264 1.02595 1.18071 0.91871 0.93991 0.88175 1.21036 1.29552 0.94634 1.06397 0.92685 1.24873 0.95164 0.98267 0.95564 1.69772 1.37826 1.35219 1.10913 0.86571 0.78463 0.85260 0.77849 1.19967 1.21348 1.21295 1.22497 0.78933 0.94737 1.03208 1.86568 1.21852 1.81118 1.47084 1.21094 0.99493 0.92057 0.95915 1.22224 1.01832 0.99962 0.94018 1.22664 0.97665 0.82527 0.98906 1.87818 1.72142 1.24995 1.46235 1.22554 0.97585 0.94783 0.86460 1.22373 1.01804 0.98192 0.96753 0.96960 0.89932 0.94566 0.93330 0.90765 0.98485 0.81059 0.91979 0.90442 0.91401 0.94014 0.89947 0.90087 0.93951 0.91361 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 7.55 37.16 0.28 -2.87 16 2 C 0.08 1.88 0.14 -155.66 -0.02 1.86 16 3 C -0.48 -12.73 6.97 -34.44 -0.24 -12.97 16 4 H 0.05 1.49 6.75 -52.49 -0.35 1.14 16 5 C 0.06 1.63 5.15 -17.82 -0.09 1.54 16 6 N -0.90 -24.55 9.36 55.43 0.52 -24.03 16 7 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 8 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 11 C 0.08 1.95 5.35 37.16 0.20 2.15 16 12 O -0.56 -12.72 12.62 -35.23 -0.44 -13.16 16 13 C -0.07 -1.40 1.45 -90.44 -0.13 -1.53 16 14 C -0.14 -2.77 4.83 -26.60 -0.13 -2.90 16 15 C 0.06 0.99 6.84 37.20 0.25 1.24 16 16 O -0.39 -6.93 10.77 -35.23 -0.38 -7.30 16 17 C 0.06 1.02 6.84 37.21 0.25 1.27 16 18 C -0.15 -2.80 4.70 -26.59 -0.12 -2.93 16 19 H 0.01 0.25 6.37 -51.93 -0.33 -0.08 16 20 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 21 H 0.04 0.82 6.36 -51.93 -0.33 0.49 16 22 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 23 H 0.07 1.92 6.08 -51.93 -0.32 1.60 16 24 H 0.00 -0.06 6.50 -51.93 -0.34 -0.40 16 25 H 0.35 6.07 9.12 45.56 0.42 6.49 16 26 H 0.06 1.40 7.70 -51.93 -0.40 1.00 16 27 H 0.08 1.57 6.77 -51.93 -0.35 1.22 16 28 H 0.07 1.35 6.27 -51.93 -0.33 1.03 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.28 6.29 -51.93 -0.33 0.95 16 34 H 0.06 1.17 6.62 -51.93 -0.34 0.83 16 LS Contribution 255.17 15.07 3.85 3.85 Total: -1.00 -28.74 255.17 -5.37 -34.11 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -4.14 Total: 5.30 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 0.25 Total: -15.14 kcal Atomic # 7 Polarization: -24.55 SS G_CDS: 0.52 Total: -24.03 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.82 Total: -20.46 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.74 -5.37 -34.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261298254.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.610 kcal (2) G-P(sol) polarization free energy of solvation -28.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds