Wall clock time and date at job start Mon Mar 30 2020 03:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47166 * 2 1 4 4 H 1.07999 * 119.99540 * 240.00557 * 3 2 1 5 5 C 1.37872 * 119.99834 * 60.00106 * 3 2 1 6 6 N 1.31511 * 120.00144 * 359.97438 * 5 3 2 7 7 Si 1.86803 * 119.99807 * 180.02562 * 5 3 2 8 8 H 1.48497 * 109.47068 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.47285 * 119.99937 * 7 5 3 10 10 H 1.48500 * 109.47091 * 239.99971 * 7 5 3 11 11 C 1.53000 * 109.47053 * 119.99963 * 2 1 3 12 12 O 1.42897 * 109.46799 * 180.18020 * 11 2 1 13 13 C 1.52999 * 109.46811 * 240.00049 * 2 1 3 14 14 C 1.53174 * 109.54697 * 59.50895 * 13 2 1 15 15 C 1.53087 * 109.16850 * 183.15223 * 14 13 2 16 16 O 1.42902 * 109.41803 * 57.60451 * 15 14 13 17 17 C 1.42906 * 114.09879 * 298.84900 * 16 15 14 18 18 C 1.53097 * 109.41497 * 61.15247 * 17 16 15 19 19 H 1.09004 * 109.47453 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47042 * 300.00192 * 1 2 3 21 21 H 1.09002 * 109.47469 * 59.99783 * 1 2 3 22 22 H 0.97004 * 119.99976 * 180.02562 * 6 5 3 23 23 H 1.08995 * 109.47251 * 300.17777 * 11 2 1 24 24 H 1.09000 * 109.47160 * 60.18334 * 11 2 1 25 25 H 0.96701 * 113.99981 * 180.02562 * 12 11 2 26 26 H 1.09002 * 109.54213 * 179.77715 * 13 2 1 27 27 H 1.09000 * 109.52335 * 63.24346 * 14 13 2 28 28 H 1.09001 * 109.52388 * 303.05739 * 14 13 2 29 29 H 1.09005 * 109.48140 * 297.62841 * 15 14 13 30 30 H 1.08993 * 109.48816 * 177.59057 * 15 14 13 31 31 H 1.08994 * 109.48558 * 181.13822 * 17 16 15 32 32 H 1.08997 * 109.48081 * 301.17464 * 17 16 15 33 33 H 1.08995 * 109.52540 * 62.29848 * 18 17 16 34 34 H 1.08998 * 109.52228 * 182.42486 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 1 2.6532 1.7740 -0.8101 5 6 1.6993 2.2697 1.0341 6 7 0.9428 1.8398 2.0202 7 14 2.3214 4.0311 1.0337 8 1 3.1454 4.2648 -0.1794 9 1 1.1661 4.9642 1.0339 10 1 3.1466 4.2649 2.2459 11 6 2.0400 -0.7212 1.2493 12 8 3.4689 -0.7175 1.2513 13 6 2.0399 -0.7212 -1.2493 14 6 1.5202 -0.0077 -2.5010 15 6 1.9696 -0.7809 -3.7435 16 8 1.4893 -2.1246 -3.6663 17 6 1.9803 -2.8561 -2.5411 18 6 1.5312 -2.1661 -1.2503 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 0.7082 2.4372 2.7475 23 1 1.6741 -0.2093 2.1392 24 1 1.6793 -1.7499 1.2476 25 1 3.8623 -1.1594 2.0163 26 1 3.1299 -0.7185 -1.2525 27 1 1.9226 1.0047 -2.5367 28 1 0.4313 0.0330 -2.4715 29 1 3.0584 -0.7866 -3.7941 30 1 1.5666 -0.3016 -4.6356 31 1 1.5850 -3.8715 -2.5670 32 1 3.0692 -2.8887 -2.5759 33 1 0.4426 -2.1690 -1.1954 34 1 1.9406 -2.6980 -0.3915 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261298254.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:04 Heat of formation + Delta-G solvation = -128.846671 kcal Electronic energy + Delta-G solvation = -15737.661538 eV Core-core repulsion = 13248.324078 eV Total energy + Delta-G solvation = -2489.337461 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.62101 -38.27373 -35.95243 -34.22213 -31.93956 -31.20941 -27.33549 -26.57378 -25.50312 -24.09535 -21.83034 -19.75013 -17.97260 -17.71032 -17.24016 -16.82173 -16.39797 -15.65958 -15.37899 -15.21061 -14.56314 -14.32290 -13.69121 -13.51382 -13.05800 -12.91105 -12.79076 -12.52626 -12.40447 -12.13335 -11.89977 -11.81192 -11.56137 -11.17222 -10.83786 -10.61913 -10.38712 -10.12490 -10.11387 -7.94860 -6.05988 1.38956 1.42874 1.51583 2.48014 3.06157 3.28341 3.94116 4.07669 4.11967 4.23310 4.27005 4.44875 4.61862 4.70082 4.75915 4.86439 4.89647 4.96954 5.03117 5.20257 5.27781 5.35046 5.38043 5.47383 5.50156 5.66102 5.73749 6.02923 6.28672 6.34655 6.52327 6.92909 7.31083 7.58713 9.03537 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.036640 B = 0.011045 C = 0.009868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.014882 B = 2534.397428 C = 2836.815436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.069 3.931 3 C -0.489 4.489 4 H 0.041 0.959 5 C 0.019 3.981 6 N -0.912 5.912 7 Si 0.938 3.062 8 H -0.275 1.275 9 H -0.284 1.284 10 H -0.288 1.288 11 C 0.091 3.909 12 O -0.579 6.579 13 C -0.063 4.063 14 C -0.140 4.140 15 C 0.064 3.936 16 O -0.400 6.400 17 C 0.063 3.937 18 C -0.148 4.148 19 H 0.031 0.969 20 H 0.056 0.944 21 H 0.032 0.968 22 H 0.255 0.745 23 H 0.046 0.954 24 H 0.019 0.981 25 H 0.369 0.631 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.436 -7.039 -5.435 9.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.068 3.932 3 C -0.528 4.528 4 H 0.060 0.940 5 C -0.178 4.178 6 N -0.553 5.553 7 Si 0.766 3.234 8 H -0.199 1.199 9 H -0.210 1.210 10 H -0.214 1.214 11 C 0.013 3.987 12 O -0.384 6.384 13 C -0.082 4.082 14 C -0.177 4.177 15 C -0.013 4.013 16 O -0.320 6.320 17 C -0.013 4.013 18 C -0.186 4.186 19 H 0.050 0.950 20 H 0.074 0.926 21 H 0.051 0.949 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.037 0.963 25 H 0.214 0.786 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.123 0.877 31 H 0.128 0.872 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.135 -6.712 -5.983 9.063 hybrid contribution 0.523 1.090 1.248 1.737 sum 1.657 -5.622 -4.735 7.535 Atomic orbital electron populations 1.21713 0.97422 0.98007 1.01062 1.18156 0.91992 0.93068 0.89961 1.21270 1.29222 0.96412 1.05846 0.94034 1.25444 0.95669 1.01096 0.95625 1.69897 1.38406 1.35860 1.11111 0.85809 0.77964 0.82079 0.77527 1.19928 1.21001 1.21401 1.22291 0.79337 0.95420 1.01637 1.86507 1.21465 1.81744 1.48661 1.20962 0.98225 0.93819 0.95161 1.22152 1.01114 0.99482 0.95001 1.22669 0.98250 0.82121 0.98227 1.87821 1.72445 1.25081 1.46615 1.22670 0.98269 0.95617 0.84743 1.22301 1.01368 0.96465 0.98417 0.95013 0.92558 0.94872 0.93548 0.93623 0.96346 0.78553 0.93838 0.92110 0.92191 0.93219 0.87682 0.87229 0.93135 0.91791 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.77 7.55 71.98 0.54 -5.22 16 2 C 0.07 3.23 0.14 -52.93 -0.01 3.23 16 3 C -0.49 -26.23 6.97 25.60 0.18 -26.05 16 4 H 0.04 2.29 6.75 -2.91 -0.02 2.27 16 5 C 0.02 1.03 5.15 84.65 0.44 1.46 16 6 N -0.91 -50.41 9.36 21.45 0.20 -50.21 16 7 Si 0.94 44.13 29.54 68.60 2.03 46.16 16 8 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 9 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 10 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 11 C 0.09 4.17 5.35 71.98 0.39 4.56 16 12 O -0.58 -25.57 12.62 -148.98 -1.88 -27.45 16 13 C -0.06 -2.57 1.45 -10.68 -0.02 -2.59 16 14 C -0.14 -5.29 4.83 30.68 0.15 -5.15 16 15 C 0.06 1.98 6.84 72.01 0.49 2.48 16 16 O -0.40 -12.90 10.77 -148.98 -1.60 -14.50 16 17 C 0.06 1.84 6.84 72.01 0.49 2.33 16 18 C -0.15 -5.06 4.70 30.69 0.14 -4.91 16 19 H 0.03 1.30 6.37 -2.38 -0.02 1.28 16 20 H 0.06 2.91 6.07 -2.39 -0.01 2.89 16 21 H 0.03 1.50 6.36 -2.39 -0.02 1.48 16 22 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 23 H 0.05 2.37 6.08 -2.39 -0.01 2.36 16 24 H 0.02 0.77 6.50 -2.39 -0.02 0.75 16 25 H 0.37 12.41 9.12 -74.06 -0.68 11.74 16 26 H 0.04 1.92 7.70 -2.39 -0.02 1.90 16 27 H 0.06 2.47 6.77 -2.39 -0.02 2.45 16 28 H 0.06 2.34 6.27 -2.39 -0.01 2.32 16 29 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 31 H 0.11 2.58 8.14 -2.39 -0.02 2.57 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 2.24 6.29 -2.39 -0.02 2.22 16 34 H 0.07 2.30 6.62 -2.39 -0.02 2.29 16 Total: -1.00 -60.07 255.17 1.96 -58.11 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.42 Total: 17.76 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 2.80 Total: -29.87 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.20 Total: -50.21 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -3.48 Total: -41.95 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -60.07 1.96 -58.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261298254.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.741 kcal (2) G-P(sol) polarization free energy of solvation -60.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds