Wall clock time and date at job start Mon Mar 30 2020 02:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38345 * 119.81377 * 2 1 4 4 C 1.38117 * 120.11172 * 180.08377 * 3 2 1 5 5 C 1.39049 * 119.66688 * 359.97438 * 4 3 2 6 6 C 1.39381 * 120.07072 * 359.88093 * 5 4 3 7 7 C 1.37942 * 119.78864 * 0.15887 * 6 5 4 8 8 C 1.50526 * 119.64299 * 180.27609 * 6 5 4 9 9 C 1.52670 * 110.15856 * 324.59761 * 8 6 5 10 10 C 1.50405 * 110.68282 * 51.20519 * 9 8 6 11 11 C 1.36220 * 120.44555 * 323.85711 * 10 9 8 12 12 C 1.40938 * 120.46137 * 180.73668 * 11 10 9 13 13 H 1.07991 * 120.00109 * 205.42606 * 12 11 10 14 14 C 1.40029 * 119.99786 * 25.42956 * 12 11 10 15 15 N 1.30792 * 120.00118 * 17.54195 * 14 12 11 16 16 Si 1.86794 * 119.99825 * 197.53647 * 14 12 11 17 17 H 1.48499 * 109.47393 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47198 * 120.00146 * 16 14 12 19 19 H 1.48493 * 109.47508 * 240.00113 * 16 14 12 20 20 H 1.08996 * 109.47492 * 89.99392 * 1 2 3 21 21 H 1.09001 * 109.47129 * 210.00418 * 1 2 3 22 22 H 1.09004 * 109.46927 * 329.99501 * 1 2 3 23 23 H 1.08003 * 119.94456 * 0.05965 * 3 2 1 24 24 H 1.07995 * 120.16796 * 180.02562 * 4 3 2 25 25 H 1.07999 * 120.00643 * 179.88446 * 7 6 5 26 26 H 1.08998 * 109.35548 * 84.80626 * 8 6 5 27 27 H 1.08998 * 109.35867 * 204.52462 * 8 6 5 28 28 H 1.08997 * 109.23607 * 171.52112 * 9 8 6 29 29 H 1.09001 * 109.23314 * 290.90128 * 9 8 6 30 30 H 1.08001 * 119.76548 * 143.99717 * 10 9 8 31 31 H 0.96993 * 119.99794 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2003 0.0000 4 6 3.5760 1.2075 -0.0017 5 6 4.2705 0.0029 -0.0030 6 6 3.5744 -1.2046 0.0001 7 6 2.1950 -1.2004 0.0010 8 6 4.3359 -2.5030 0.0050 9 6 5.6107 -2.3684 -0.8242 10 6 6.3964 -1.1587 -0.3982 11 6 5.7556 -0.0198 -0.0137 12 6 6.4916 1.1190 0.3708 13 1 6.0533 1.8448 1.0396 14 6 7.7913 1.3093 -0.1144 15 7 8.2007 0.6465 -1.1650 16 14 8.9402 2.5100 0.7386 17 1 8.2416 3.1275 1.8944 18 1 10.1451 1.7864 1.2182 19 1 9.3476 3.5701 -0.2181 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5139 23 1 1.6509 2.1334 0.0010 24 1 4.1139 2.1440 -0.0013 25 1 1.6520 -2.1340 0.0015 26 1 4.5978 -2.7643 1.0303 27 1 3.7122 -3.2893 -0.4200 28 1 6.2228 -3.2601 -0.6891 29 1 5.3456 -2.2718 -1.8771 30 1 7.4758 -1.1928 -0.3993 31 1 9.1011 0.7781 -1.5008 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261308952.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:03 Heat of formation + Delta-G solvation = 11.827281 kcal Electronic energy + Delta-G solvation = -13647.041999 eV Core-core repulsion = 11471.113538 eV Total energy + Delta-G solvation = -2175.928461 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.02975 -35.48104 -33.46450 -31.72390 -30.14739 -28.60982 -25.83126 -25.10075 -22.35619 -20.79141 -20.44927 -17.72136 -16.28606 -15.19399 -14.67393 -14.49852 -14.15232 -13.40091 -13.14449 -13.02121 -12.42514 -12.14018 -11.86569 -11.53554 -11.31618 -11.23904 -11.04659 -10.86329 -10.69370 -10.32633 -10.17743 -9.29640 -9.16942 -9.03172 -8.28642 -7.97365 -6.63964 -6.46614 -4.09044 2.00080 2.18513 3.07606 3.20372 3.25455 3.93906 4.13993 4.68279 5.34205 5.41930 5.50581 5.66045 5.77325 5.87117 5.89470 6.02811 6.14432 6.22587 6.30879 6.41955 6.51209 6.75897 6.89059 6.95607 7.06309 7.25542 7.26716 7.31841 7.48606 7.56822 7.83055 8.20506 8.44688 8.95065 9.17158 9.31591 10.52352 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.036711 B = 0.009428 C = 0.007802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.521348 B = 2969.235832 C = 3587.740130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.119 4.119 3 C -0.132 4.132 4 C -0.107 4.107 5 C -0.015 4.015 6 C -0.086 4.086 7 C -0.125 4.125 8 C -0.072 4.072 9 C -0.055 4.055 10 C -0.299 4.299 11 C 0.060 3.940 12 C -0.462 4.462 13 H 0.067 0.933 14 C 0.074 3.926 15 N -0.804 5.804 16 Si 0.896 3.104 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.279 1.279 20 H 0.060 0.940 21 H 0.057 0.943 22 H 0.058 0.942 23 H 0.109 0.891 24 H 0.124 0.876 25 H 0.109 0.891 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.037 0.963 30 H 0.113 0.887 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.148 -1.584 1.595 8.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.119 4.119 3 C -0.150 4.150 4 C -0.125 4.125 5 C -0.015 4.015 6 C -0.086 4.086 7 C -0.143 4.143 8 C -0.110 4.110 9 C -0.092 4.092 10 C -0.321 4.321 11 C 0.058 3.942 12 C -0.494 4.494 13 H 0.085 0.915 14 C -0.140 4.140 15 N -0.432 5.432 16 Si 0.722 3.278 17 H -0.188 1.188 18 H -0.201 1.201 19 H -0.205 1.205 20 H 0.079 0.921 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.127 0.873 24 H 0.142 0.858 25 H 0.127 0.873 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.131 0.869 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.970 -1.599 1.441 8.255 hybrid contribution 0.635 0.652 0.233 0.939 sum -7.335 -0.948 1.675 7.583 Atomic orbital electron populations 1.20665 0.92309 1.01717 1.01334 1.19668 0.95066 0.93369 1.03806 1.20873 0.94387 0.96614 1.03105 1.21230 0.93065 0.98511 0.99723 1.19617 0.95965 0.91322 0.94568 1.20001 0.92879 0.95477 1.00214 1.20644 0.93492 0.96697 1.03505 1.20360 0.96708 0.93237 1.00653 1.19975 0.93912 0.98033 0.97326 1.22800 0.98538 0.92273 1.18479 1.17489 0.86403 0.93685 0.96577 1.19154 0.97998 1.06299 1.25928 0.91478 1.25662 0.98614 0.96137 0.93612 1.69849 1.17806 1.37595 1.17935 0.86463 0.80509 0.80502 0.80335 1.18799 1.20123 1.20457 0.92149 0.92379 0.92325 0.87285 0.85786 0.87321 0.91632 0.92766 0.93711 0.94428 0.86913 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 10.00 36.01 0.36 -0.99 16 2 C -0.12 -2.08 5.88 -104.54 -0.62 -2.69 16 3 C -0.13 -2.44 9.69 -39.59 -0.38 -2.83 16 4 C -0.11 -2.34 9.41 -39.33 -0.37 -2.71 16 5 C -0.01 -0.35 5.75 -104.92 -0.60 -0.96 16 6 C -0.09 -1.83 5.66 -104.39 -0.59 -2.42 16 7 C -0.13 -2.32 9.35 -39.65 -0.37 -2.69 16 8 C -0.07 -1.44 5.91 -28.14 -0.17 -1.60 16 9 C -0.06 -1.23 6.06 -28.20 -0.17 -1.40 16 10 C -0.30 -7.90 8.79 -35.18 -0.31 -8.21 16 11 C 0.06 1.61 5.57 -105.35 -0.59 1.03 16 12 C -0.46 -12.67 8.25 -37.89 -0.31 -12.99 16 13 H 0.07 1.78 7.45 -52.49 -0.39 1.39 16 14 C 0.07 1.96 5.11 -17.32 -0.09 1.87 16 15 N -0.80 -22.05 11.03 55.55 0.61 -21.44 16 16 Si 0.90 19.80 29.59 -169.99 -5.03 14.77 16 17 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 20 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 21 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 22 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 23 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 24 H 0.12 2.70 7.18 -52.49 -0.38 2.32 16 25 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 26 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.05 0.92 8.06 -51.93 -0.42 0.50 16 28 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.11 3.21 6.13 -52.49 -0.32 2.89 16 31 H 0.27 6.84 8.29 -40.82 -0.34 6.50 16 LS Contribution 259.34 15.07 3.91 3.91 Total: -1.00 -28.50 259.34 -8.74 -37.24 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -4.02 Total: 2.12 kcal Atomic # 6 Polarization: -32.39 SS G_CDS: -4.21 Total: -36.60 kcal Atomic # 7 Polarization: -22.05 SS G_CDS: 0.61 Total: -21.44 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.50 -8.74 -37.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261308952.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.068 kcal (2) G-P(sol) polarization free energy of solvation -28.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds