Wall clock time and date at job start Mon Mar 30 2020 02:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38345 * 119.81377 * 2 1 4 4 C 1.38117 * 120.11172 * 180.08377 * 3 2 1 5 5 C 1.39049 * 119.66688 * 359.97438 * 4 3 2 6 6 C 1.39381 * 120.07072 * 359.88093 * 5 4 3 7 7 C 1.37942 * 119.78864 * 0.15887 * 6 5 4 8 8 C 1.50526 * 119.64299 * 180.27609 * 6 5 4 9 9 C 1.52670 * 110.15856 * 324.59761 * 8 6 5 10 10 C 1.50405 * 110.68282 * 51.20519 * 9 8 6 11 11 C 1.36220 * 120.44555 * 323.85711 * 10 9 8 12 12 C 1.40938 * 120.46137 * 180.73668 * 11 10 9 13 13 H 1.07991 * 120.00109 * 205.42606 * 12 11 10 14 14 C 1.40029 * 119.99786 * 25.42956 * 12 11 10 15 15 N 1.30792 * 120.00118 * 17.54195 * 14 12 11 16 16 Si 1.86794 * 119.99825 * 197.53647 * 14 12 11 17 17 H 1.48499 * 109.47393 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47198 * 120.00146 * 16 14 12 19 19 H 1.48493 * 109.47508 * 240.00113 * 16 14 12 20 20 H 1.08996 * 109.47492 * 89.99392 * 1 2 3 21 21 H 1.09001 * 109.47129 * 210.00418 * 1 2 3 22 22 H 1.09004 * 109.46927 * 329.99501 * 1 2 3 23 23 H 1.08003 * 119.94456 * 0.05965 * 3 2 1 24 24 H 1.07995 * 120.16796 * 180.02562 * 4 3 2 25 25 H 1.07999 * 120.00643 * 179.88446 * 7 6 5 26 26 H 1.08998 * 109.35548 * 84.80626 * 8 6 5 27 27 H 1.08998 * 109.35867 * 204.52462 * 8 6 5 28 28 H 1.08997 * 109.23607 * 171.52112 * 9 8 6 29 29 H 1.09001 * 109.23314 * 290.90128 * 9 8 6 30 30 H 1.08001 * 119.76548 * 143.99717 * 10 9 8 31 31 H 0.96993 * 119.99794 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2003 0.0000 4 6 3.5760 1.2075 -0.0017 5 6 4.2705 0.0029 -0.0030 6 6 3.5744 -1.2046 0.0001 7 6 2.1950 -1.2004 0.0010 8 6 4.3359 -2.5030 0.0050 9 6 5.6107 -2.3684 -0.8242 10 6 6.3964 -1.1587 -0.3982 11 6 5.7556 -0.0198 -0.0137 12 6 6.4916 1.1190 0.3708 13 1 6.0533 1.8448 1.0396 14 6 7.7913 1.3093 -0.1144 15 7 8.2007 0.6465 -1.1650 16 14 8.9402 2.5100 0.7386 17 1 8.2416 3.1275 1.8944 18 1 10.1451 1.7864 1.2182 19 1 9.3476 3.5701 -0.2181 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5139 23 1 1.6509 2.1334 0.0010 24 1 4.1139 2.1440 -0.0013 25 1 1.6520 -2.1340 0.0015 26 1 4.5978 -2.7643 1.0303 27 1 3.7122 -3.2893 -0.4200 28 1 6.2228 -3.2601 -0.6891 29 1 5.3456 -2.2718 -1.8771 30 1 7.4758 -1.1928 -0.3993 31 1 9.1011 0.7781 -1.5008 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261308952.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:03 Heat of formation + Delta-G solvation = -2.308142 kcal Electronic energy + Delta-G solvation = -13647.654957 eV Core-core repulsion = 11471.113538 eV Total energy + Delta-G solvation = -2176.541419 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.60544 -37.18209 -35.31935 -33.31163 -31.78363 -30.30689 -27.28114 -26.94262 -24.01167 -22.46465 -22.08444 -19.53751 -18.06776 -17.11913 -16.23526 -16.10373 -15.75454 -15.01175 -14.68364 -14.36387 -14.04262 -13.62120 -13.52177 -13.09700 -12.90063 -12.82824 -12.72608 -12.51452 -12.36057 -11.99956 -11.86377 -11.07421 -11.03955 -10.92281 -10.02993 -9.51077 -8.48011 -8.46356 -6.18816 0.40068 0.63885 1.30045 1.36361 1.50297 2.10550 2.26558 2.94108 3.54995 3.96674 4.10529 4.20720 4.36165 4.51988 4.59191 4.61214 4.71600 4.85160 4.94144 4.97596 5.08891 5.12906 5.27035 5.30063 5.42120 5.44545 5.54432 5.72525 5.80322 5.93712 6.08056 6.29415 6.43658 6.91142 7.13984 7.32796 8.52867 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.036711 B = 0.009428 C = 0.007802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.521348 B = 2969.235832 C = 3587.740130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.106 4.106 3 C -0.133 4.133 4 C -0.125 4.125 5 C -0.063 4.063 6 C -0.099 4.099 7 C -0.125 4.125 8 C -0.067 4.067 9 C -0.051 4.051 10 C -0.326 4.326 11 C 0.041 3.959 12 C -0.496 4.496 13 H 0.061 0.939 14 C 0.029 3.971 15 N -0.838 5.838 16 Si 0.971 3.029 17 H -0.261 1.261 18 H -0.269 1.269 19 H -0.268 1.268 20 H 0.077 0.923 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.140 0.860 24 H 0.107 0.893 25 H 0.145 0.855 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.060 0.940 29 H 0.029 0.971 30 H 0.081 0.919 31 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.632 -1.829 2.069 10.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.106 4.106 3 C -0.151 4.151 4 C -0.143 4.143 5 C -0.063 4.063 6 C -0.099 4.099 7 C -0.142 4.142 8 C -0.104 4.104 9 C -0.088 4.088 10 C -0.348 4.348 11 C 0.039 3.961 12 C -0.527 4.527 13 H 0.080 0.920 14 C -0.183 4.183 15 N -0.466 5.466 16 Si 0.793 3.207 17 H -0.185 1.185 18 H -0.194 1.194 19 H -0.193 1.193 20 H 0.095 0.905 21 H 0.096 0.904 22 H 0.093 0.907 23 H 0.157 0.843 24 H 0.125 0.875 25 H 0.163 0.837 26 H 0.086 0.914 27 H 0.110 0.890 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.099 0.901 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.466 -1.853 1.912 10.799 hybrid contribution 1.296 0.741 0.066 1.494 sum -9.170 -1.112 1.978 9.446 Atomic orbital electron populations 1.20757 0.88464 1.03624 1.02947 1.20258 0.97746 0.92334 1.00275 1.21197 0.92928 0.98827 1.02116 1.21256 0.94838 0.97303 1.00918 1.19651 0.94659 0.93507 0.98483 1.20265 0.94460 0.94895 1.00314 1.21051 0.92276 0.98800 1.02096 1.20350 0.95742 0.93827 1.00498 1.19923 0.95143 0.96671 0.97111 1.22858 0.97522 0.94461 1.19922 1.17915 0.88812 0.93517 0.95824 1.19441 0.99387 1.07000 1.26903 0.92044 1.26554 0.99785 0.98039 0.93881 1.69940 1.18488 1.39125 1.19090 0.85333 0.78031 0.78160 0.79174 1.18458 1.19377 1.19318 0.90464 0.90381 0.90681 0.84260 0.87458 0.83701 0.91414 0.88985 0.92138 0.95296 0.90136 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.10 10.00 71.24 0.71 -1.39 16 2 C -0.11 -3.30 5.88 -19.81 -0.12 -3.42 16 3 C -0.13 -4.66 9.69 22.27 0.22 -4.45 16 4 C -0.12 -5.57 9.41 22.44 0.21 -5.35 16 5 C -0.06 -3.10 5.75 -20.06 -0.12 -3.22 16 6 C -0.10 -4.15 5.66 -19.71 -0.11 -4.26 16 7 C -0.12 -4.18 9.35 22.23 0.21 -3.97 16 8 C -0.07 -2.58 5.91 29.68 0.18 -2.41 16 9 C -0.05 -2.32 6.06 29.65 0.18 -2.14 16 10 C -0.33 -18.14 8.79 25.12 0.22 -17.92 16 11 C 0.04 2.31 5.57 -20.34 -0.11 2.20 16 12 C -0.50 -28.68 8.25 23.37 0.19 -28.49 16 13 H 0.06 3.47 7.45 -2.92 -0.02 3.45 16 14 C 0.03 1.58 5.11 85.28 0.44 2.02 16 15 N -0.84 -48.11 11.03 21.84 0.24 -47.87 16 16 Si 0.97 41.93 29.59 68.60 2.03 43.96 16 17 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 18 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 19 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 20 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.08 1.36 8.08 -2.39 -0.02 1.34 16 22 H 0.07 1.36 8.08 -2.38 -0.02 1.34 16 23 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 24 H 0.11 4.95 7.18 -2.91 -0.02 4.93 16 25 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 26 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.09 2.80 8.06 -2.39 -0.02 2.79 16 28 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 4.90 6.13 -2.91 -0.02 4.89 16 31 H 0.28 14.54 8.29 -92.71 -0.77 13.77 16 Total: -1.00 -65.48 259.34 5.47 -60.01 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 1.11 Total: 16.71 kcal Atomic # 6 Polarization: -74.90 SS G_CDS: 2.09 Total: -72.80 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: 0.24 Total: -47.87 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -65.48 5.47 -60.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261308952.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.699 kcal (2) G-P(sol) polarization free energy of solvation -65.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds