Wall clock time and date at job start Mon Mar 30 2020 02:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36942 * 119.99483 * 2 1 4 4 H 1.08004 * 119.99995 * 203.04568 * 3 2 1 5 5 C 1.38814 * 119.99920 * 23.05623 * 3 2 1 6 6 N 1.31618 * 120.00030 * 13.23525 * 5 3 2 7 7 Si 1.86799 * 119.99900 * 193.23614 * 5 3 2 8 8 H 1.48496 * 109.47101 * 89.99566 * 7 5 3 9 9 H 1.48501 * 109.47220 * 209.99806 * 7 5 3 10 10 H 1.48498 * 109.47034 * 329.99849 * 7 5 3 11 11 C 1.46502 * 120.00401 * 180.02562 * 2 1 3 12 12 N 1.46500 * 109.46941 * 90.00097 * 11 2 1 13 13 C 1.46767 * 124.34604 * 269.72121 * 12 11 2 14 14 C 1.54660 * 105.37860 * 162.85424 * 13 12 11 15 15 H 1.09000 * 111.19869 * 267.59614 * 14 13 12 16 16 O 1.42907 * 110.84952 * 143.79171 * 14 13 12 17 17 C 1.54627 * 101.68681 * 25.77108 * 14 13 12 18 18 C 1.34417 * 124.34948 * 90.02527 * 12 11 2 19 19 O 1.21274 * 124.94761 * 0.42729 * 18 12 11 20 20 H 1.09001 * 109.47440 * 275.12693 * 1 2 3 21 21 H 1.09005 * 109.46489 * 155.13428 * 1 2 3 22 22 H 1.08996 * 109.47450 * 35.13389 * 1 2 3 23 23 H 0.97003 * 120.00250 * 180.02562 * 6 5 3 24 24 H 1.08998 * 109.46696 * 209.99807 * 11 2 1 25 25 H 1.08995 * 109.46810 * 330.00161 * 11 2 1 26 26 H 1.08994 * 110.24824 * 281.98545 * 13 12 11 27 27 H 1.09004 * 110.24470 * 43.99275 * 13 12 11 28 28 H 0.96703 * 113.99785 * 186.33703 * 16 14 13 29 29 H 1.09000 * 110.49000 * 216.30688 * 17 14 13 30 30 H 1.09005 * 110.60252 * 93.71436 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1650 1.2234 -0.3662 5 6 1.5386 2.3401 0.4708 6 7 0.4149 2.2591 1.1514 7 14 2.3111 4.0081 0.1384 8 1 1.7871 4.5501 -1.1409 9 1 1.9744 4.9390 1.2453 10 1 3.7859 3.8611 0.0466 11 6 2.1976 -1.2687 -0.0006 12 7 2.4418 -1.6909 -1.3820 13 6 1.5332 -2.5403 -2.1611 14 6 1.9607 -2.3536 -3.6357 15 1 1.3904 -1.5570 -4.1135 16 8 1.8314 -3.5778 -4.3616 17 6 3.4469 -1.9553 -3.4830 18 6 3.5295 -1.3550 -2.0967 19 8 4.4441 -0.6706 -1.6896 20 1 -0.3634 0.0918 1.0235 21 1 -0.3632 -0.9325 -0.4322 22 1 -0.3634 0.8404 -0.5914 23 1 -0.0123 3.0656 1.4801 24 1 3.1500 -1.1384 0.5133 25 1 1.6085 -2.0285 0.5129 26 1 1.6428 -3.5829 -1.8628 27 1 0.5021 -2.2144 -2.0245 28 1 2.1774 -3.5385 -5.2638 29 1 3.7233 -1.2168 -4.2355 30 1 4.0889 -2.8330 -3.5574 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306153515.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:40 Heat of formation + Delta-G solvation = -51.346724 kcal Electronic energy + Delta-G solvation = -14875.798049 eV Core-core repulsion = 12286.280895 eV Total energy + Delta-G solvation = -2589.517154 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.88342 -36.97012 -35.76909 -34.44916 -31.55044 -29.83537 -27.19842 -25.92168 -25.24626 -21.51892 -21.41342 -18.96298 -17.54838 -16.77620 -16.26441 -15.41965 -15.14419 -14.51035 -13.96163 -13.64937 -13.48196 -13.17923 -12.82839 -12.54885 -11.90376 -11.78328 -11.32147 -10.94786 -10.83319 -10.64305 -10.50479 -10.32984 -9.97451 -9.92874 -9.17067 -8.63197 -8.14840 -6.94863 -5.77143 -3.24798 3.17637 3.38975 3.46168 3.51755 3.64053 4.11879 4.52016 4.61261 4.71798 5.04557 5.40817 5.47062 5.54214 5.70915 5.74715 5.84808 5.96466 6.04214 6.47686 6.62770 7.13359 7.34511 7.48125 7.63473 7.81807 7.90572 8.34940 8.81999 9.19988 9.78997 10.24574 11.27932 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.039108 B = 0.009360 C = 0.008493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.794829 B = 2990.606311 C = 3296.092605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.156 3.844 2 N -0.585 5.585 3 C -0.260 4.260 4 H 0.079 0.921 5 C 0.005 3.995 6 N -0.907 5.907 7 Si 0.907 3.093 8 H -0.288 1.288 9 H -0.290 1.290 10 H -0.276 1.276 11 C 0.359 3.641 12 N -0.618 5.618 13 C 0.109 3.891 14 C 0.093 3.907 15 H 0.079 0.921 16 O -0.559 6.559 17 C -0.193 4.193 18 C 0.519 3.481 19 O -0.532 6.532 20 H 0.038 0.962 21 H -0.001 1.001 22 H 0.041 0.959 23 H 0.253 0.747 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.381 0.619 29 H 0.095 0.905 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.612 -10.147 -8.982 13.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.307 5.307 3 C -0.389 4.389 4 H 0.096 0.904 5 C -0.194 4.194 6 N -0.552 5.552 7 Si 0.736 3.264 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.201 1.201 11 C 0.151 3.849 12 N -0.360 5.360 13 C -0.016 4.016 14 C 0.033 3.967 15 H 0.097 0.903 16 O -0.365 6.365 17 C -0.234 4.234 18 C 0.304 3.696 19 O -0.408 6.408 20 H 0.057 0.943 21 H 0.017 0.983 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.097 0.903 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.228 0.772 29 H 0.113 0.887 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.663 -9.772 -7.953 12.617 hybrid contribution 0.429 1.203 -0.844 1.531 sum 1.092 -8.569 -8.797 12.329 Atomic orbital electron populations 1.20923 0.82567 0.95509 0.99900 1.44597 1.02298 1.01556 1.82203 1.19436 0.98617 0.85260 1.35607 0.90362 1.25045 0.97714 0.98736 0.97855 1.70077 1.19672 1.27400 1.38043 0.86206 0.79171 0.83676 0.77308 1.21508 1.21673 1.20149 1.20801 0.97010 0.87418 0.79684 1.50620 1.20023 1.49137 1.16192 1.21893 0.95397 0.95736 0.88547 1.22723 0.94236 0.86511 0.93188 0.90309 1.86474 1.85301 1.34578 1.30118 1.23175 0.98660 1.03220 0.98356 1.20537 0.82598 0.79594 0.86844 1.90696 1.36446 1.38397 1.75284 0.94345 0.98275 0.93987 0.93685 0.90283 0.91862 0.90915 0.90217 0.77186 0.88654 0.87823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.74 8.98 59.85 0.54 4.28 16 2 N -0.58 -14.84 3.16 -184.86 -0.58 -15.42 16 3 C -0.26 -7.44 9.65 -15.06 -0.15 -7.59 16 4 H 0.08 2.36 7.53 -52.48 -0.40 1.97 16 5 C 0.00 0.14 5.10 -17.43 -0.09 0.05 16 6 N -0.91 -26.61 10.73 55.49 0.60 -26.01 16 7 Si 0.91 22.84 29.57 -169.99 -5.03 17.81 16 8 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 9 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 C 0.36 7.59 6.44 -63.75 -0.41 7.17 16 12 N -0.62 -11.56 3.17 -176.01 -0.56 -12.12 16 13 C 0.11 1.60 7.11 -3.02 -0.02 1.58 16 14 C 0.09 1.17 4.55 -25.00 -0.11 1.05 16 15 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 16 O -0.56 -5.96 13.41 -35.23 -0.47 -6.43 16 17 C -0.19 -2.65 6.61 -26.74 -0.18 -2.82 16 18 C 0.52 10.15 8.02 -10.86 -0.09 10.06 16 19 O -0.53 -12.80 17.26 5.56 0.10 -12.70 16 20 H 0.04 0.99 7.34 -51.93 -0.38 0.61 16 21 H 0.00 -0.03 7.35 -51.93 -0.38 -0.41 16 22 H 0.04 1.10 7.35 -51.93 -0.38 0.71 16 23 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.08 1.79 7.82 -51.93 -0.41 1.38 16 25 H 0.06 1.17 8.07 -51.93 -0.42 0.75 16 26 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 27 H 0.08 1.18 7.46 -51.93 -0.39 0.79 16 28 H 0.38 2.30 9.11 45.56 0.42 2.71 16 29 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.10 1.24 8.11 -51.93 -0.42 0.82 16 LS Contribution 257.91 15.07 3.89 3.89 Total: -1.00 -33.65 257.91 -5.73 -39.38 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: -3.16 Total: -2.17 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: -0.51 Total: 13.79 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.55 Total: -53.56 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.38 Total: -19.13 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.03 Total: 17.81 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.65 -5.73 -39.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306153515.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.969 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds