Wall clock time and date at job start Mon Mar 30 2020 02:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36935 * 119.99933 * 2 1 4 4 H 1.08005 * 119.99641 * 203.03932 * 3 2 1 5 5 C 1.38807 * 120.00479 * 23.03929 * 3 2 1 6 6 N 1.31625 * 119.99919 * 13.15234 * 5 3 2 7 7 Si 1.86799 * 120.00433 * 193.15407 * 5 3 2 8 8 H 1.48506 * 109.47036 * 89.99729 * 7 5 3 9 9 H 1.48494 * 109.47183 * 209.99822 * 7 5 3 10 10 H 1.48502 * 109.47166 * 330.00096 * 7 5 3 11 11 C 1.46501 * 119.99803 * 180.02562 * 2 1 3 12 12 N 1.46502 * 109.47405 * 89.99806 * 11 2 1 13 13 C 1.46759 * 124.34705 * 89.99901 * 12 11 2 14 14 C 1.54487 * 105.47113 * 197.03826 * 13 12 11 15 15 H 1.08996 * 110.96766 * 92.74204 * 14 13 12 16 16 O 1.42903 * 110.96584 * 216.46779 * 14 13 12 17 17 C 1.54633 * 101.79705 * 334.60018 * 14 13 12 18 18 C 1.34415 * 124.34465 * 270.02319 * 12 11 2 19 19 O 1.21279 * 124.94642 * 359.59347 * 18 12 11 20 20 H 1.08994 * 109.47111 * 275.13137 * 1 2 3 21 21 H 1.09006 * 109.46702 * 35.12867 * 1 2 3 22 22 H 1.09000 * 109.47274 * 155.12760 * 1 2 3 23 23 H 0.96992 * 120.00403 * 179.97438 * 6 5 3 24 24 H 1.09000 * 109.47115 * 329.99428 * 11 2 1 25 25 H 1.09001 * 109.47029 * 209.99872 * 11 2 1 26 26 H 1.08998 * 110.24594 * 78.04050 * 13 12 11 27 27 H 1.09006 * 110.32233 * 316.07435 * 13 12 11 28 28 H 0.96701 * 113.99688 * 176.90721 * 16 14 13 29 29 H 1.09001 * 110.48273 * 143.45935 * 17 14 13 30 30 H 1.08994 * 110.48806 * 266.10060 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1652 1.2231 -0.3661 5 6 1.5388 2.3401 0.4704 6 7 0.4141 2.2595 1.1494 7 14 2.3127 4.0078 0.1400 8 1 1.7908 4.5508 -1.1399 9 1 1.9750 4.9383 1.2468 10 1 3.7876 3.8600 0.0501 11 6 2.1975 -1.2688 -0.0006 12 7 2.4417 -1.6911 -1.3820 13 6 3.6290 -1.3241 -2.1625 14 6 3.2571 -1.6051 -3.6353 15 1 2.8537 -0.7123 -4.1130 16 8 4.3822 -2.1058 -4.3603 17 6 2.1678 -2.6923 -3.4844 18 6 1.6067 -2.4643 -2.0974 19 8 0.5559 -2.9132 -1.6910 20 1 -0.3633 0.0919 1.0235 21 1 -0.3633 0.8406 -0.5914 22 1 -0.3634 -0.9323 -0.4322 23 1 -0.0127 3.0660 1.4785 24 1 1.6085 -2.0286 0.5130 25 1 3.1500 -1.1387 0.5133 26 1 4.4802 -1.9365 -1.8649 27 1 3.8595 -0.2673 -2.0268 28 1 4.1860 -2.3416 -5.2773 29 1 1.3908 -2.5608 -4.2374 30 1 2.6082 -3.6865 -3.5590 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306153518.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:42 Heat of formation + Delta-G solvation = -78.017379 kcal Electronic energy + Delta-G solvation = -14864.709177 eV Core-core repulsion = 12274.035497 eV Total energy + Delta-G solvation = -2590.673681 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.30530 -38.17064 -37.58905 -35.94915 -33.42331 -31.37479 -28.42271 -28.04236 -26.98825 -23.36957 -22.57107 -20.53334 -18.84813 -18.52296 -17.65857 -17.11665 -16.77660 -16.08116 -15.36993 -15.29219 -14.96953 -14.87494 -14.24874 -13.91125 -13.70166 -13.13857 -12.99162 -12.87147 -12.61859 -12.46532 -12.08352 -11.95802 -11.80342 -11.38494 -10.81564 -10.59547 -9.72505 -9.02595 -7.89154 -5.43139 1.46211 1.47798 1.56828 1.62892 2.22482 2.48634 3.10867 3.29689 3.47855 3.60957 3.65496 4.05278 4.29375 4.44009 4.57292 4.70456 4.72544 4.79146 4.81819 5.02047 5.17533 5.50830 5.60879 5.71405 6.20616 6.33687 6.89385 7.03836 7.24315 7.71745 8.19721 9.14709 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.034061 B = 0.009896 C = 0.008239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.864081 B = 2828.876404 C = 3397.797430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.603 5.603 3 C -0.271 4.271 4 H 0.082 0.918 5 C -0.050 4.050 6 N -0.937 5.937 7 Si 0.975 3.025 8 H -0.287 1.287 9 H -0.296 1.296 10 H -0.260 1.260 11 C 0.363 3.637 12 N -0.618 5.618 13 C 0.104 3.896 14 C 0.111 3.889 15 H 0.086 0.914 16 O -0.561 6.561 17 C -0.175 4.175 18 C 0.501 3.499 19 O -0.589 6.589 20 H 0.011 0.989 21 H 0.013 0.987 22 H 0.016 0.984 23 H 0.250 0.750 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.404 0.596 29 H 0.113 0.887 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.064 -7.049 -10.892 15.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.327 5.327 3 C -0.400 4.400 4 H 0.100 0.900 5 C -0.246 4.246 6 N -0.582 5.582 7 Si 0.803 3.197 8 H -0.214 1.214 9 H -0.223 1.223 10 H -0.185 1.185 11 C 0.155 3.845 12 N -0.357 5.357 13 C -0.019 4.019 14 C 0.051 3.949 15 H 0.103 0.897 16 O -0.370 6.370 17 C -0.215 4.215 18 C 0.289 3.711 19 O -0.470 6.470 20 H 0.030 0.970 21 H 0.032 0.968 22 H 0.035 0.965 23 H 0.059 0.941 24 H 0.078 0.922 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.095 0.905 28 H 0.256 0.744 29 H 0.132 0.868 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.728 -7.003 -9.913 14.389 hybrid contribution -0.509 0.977 -0.280 1.136 sum 7.219 -6.026 -10.193 13.868 Atomic orbital electron populations 1.20514 0.83267 0.95260 0.97632 1.44712 1.02173 1.02377 1.83438 1.19560 0.98684 0.86231 1.35564 0.90032 1.25924 0.98371 1.02350 0.97918 1.70264 1.21034 1.27970 1.38980 0.85158 0.78756 0.79148 0.76687 1.21437 1.22308 1.18457 1.20754 0.96562 0.86251 0.80916 1.50196 1.21208 1.48639 1.15627 1.22019 0.88264 1.01783 0.89864 1.22392 0.85567 0.95015 0.91969 0.89661 1.86442 1.34160 1.86271 1.30081 1.23126 1.00921 1.03153 0.94282 1.21575 0.83047 0.77397 0.89035 1.90643 1.24575 1.54911 1.76918 0.97032 0.96822 0.96521 0.94085 0.92184 0.89327 0.89339 0.90529 0.74427 0.86824 0.85478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.65 8.98 127.77 1.15 10.80 16 2 N -0.60 -30.92 3.16 -738.75 -2.34 -33.25 16 3 C -0.27 -14.42 9.65 84.03 0.81 -13.60 16 4 H 0.08 4.06 7.63 -2.91 -0.02 4.04 16 5 C -0.05 -2.76 5.10 84.86 0.43 -2.32 16 6 N -0.94 -55.76 10.72 21.65 0.23 -55.53 16 7 Si 0.97 43.95 29.57 68.60 2.03 45.98 16 8 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 9 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 10 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 11 C 0.36 15.29 6.44 170.96 1.10 16.39 16 12 N -0.62 -22.36 3.17 -829.62 -2.63 -24.99 16 13 C 0.10 2.95 7.11 86.84 0.62 3.57 16 14 C 0.11 2.42 4.53 31.66 0.14 2.57 16 15 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 16 O -0.56 -9.79 13.41 -148.98 -2.00 -11.78 16 17 C -0.17 -4.10 6.62 30.61 0.20 -3.90 16 18 C 0.50 18.26 8.02 87.92 0.71 18.97 16 19 O -0.59 -26.67 16.76 -3.03 -0.05 -26.72 16 20 H 0.01 0.66 7.34 -2.39 -0.02 0.64 16 21 H 0.01 0.76 7.35 -2.38 -0.02 0.74 16 22 H 0.02 0.85 7.19 -2.39 -0.02 0.84 16 23 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 24 H 0.06 2.61 7.85 -2.39 -0.02 2.59 16 25 H 0.09 3.42 8.04 -2.39 -0.02 3.40 16 26 H 0.09 2.24 8.10 -2.39 -0.02 2.22 16 27 H 0.08 2.36 7.90 -2.38 -0.02 2.34 16 28 H 0.40 3.01 9.12 -74.06 -0.68 2.34 16 29 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.13 2.47 8.10 -2.39 -0.02 2.45 16 Total: -1.00 -70.55 257.77 0.87 -69.68 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 0.47 Total: 4.15 kcal Atomic # 6 Polarization: 27.30 SS G_CDS: 5.16 Total: 32.46 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -4.73 Total: -113.77 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -2.05 Total: -38.50 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -70.55 0.87 -69.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306153518.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.339 kcal (2) G-P(sol) polarization free energy of solvation -70.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds