Wall clock time and date at job start Mon Mar 30 2020 02:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.50631 * 2 1 4 4 O 1.43091 * 109.49168 * 239.88697 * 2 1 3 5 5 C 1.43020 * 113.68830 * 181.41571 * 4 2 1 6 6 C 1.53095 * 109.29124 * 58.65137 * 5 4 2 7 7 N 1.47016 * 109.26218 * 303.13039 * 6 5 4 8 8 C 1.47013 * 110.75310 * 58.61097 * 7 6 5 9 9 H 1.09000 * 109.50641 * 61.32241 * 8 7 6 10 10 C 1.50699 * 109.50711 * 181.45223 * 8 7 6 11 11 O 1.21292 * 120.00102 * 20.00607 * 10 8 7 12 12 N 1.34777 * 119.99669 * 200.00355 * 10 8 7 13 13 C 1.37105 * 119.99697 * 180.02562 * 12 10 8 14 14 H 1.08000 * 119.99727 * 0.02562 * 13 12 10 15 15 C 1.38943 * 119.99808 * 179.97438 * 13 12 10 16 16 N 1.31417 * 120.00403 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99832 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47294 * 90.00122 * 17 15 13 19 19 H 1.48510 * 109.47158 * 209.99928 * 17 15 13 20 20 H 1.48501 * 109.47053 * 329.99791 * 17 15 13 21 21 H 1.09009 * 109.46932 * 299.91102 * 1 2 3 22 22 H 1.09003 * 109.47059 * 59.90992 * 1 2 3 23 23 H 1.08994 * 109.47261 * 179.91790 * 1 2 3 24 24 H 1.09002 * 109.50941 * 298.69500 * 5 4 2 25 25 H 1.09003 * 109.50633 * 178.60964 * 5 4 2 26 26 H 1.09008 * 109.50518 * 63.06430 * 6 5 4 27 27 H 1.09003 * 109.51010 * 183.19294 * 6 5 4 28 28 H 1.00898 * 110.99377 * 294.84113 * 7 6 5 29 29 H 0.96999 * 120.00432 * 359.97438 * 12 10 8 30 30 H 0.96997 * 119.99953 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 8 2.0075 -0.6768 -1.1669 5 6 3.4334 -0.7573 -1.2413 6 6 3.9639 -1.4884 -0.0052 7 7 3.5093 -0.7881 1.2048 8 6 2.0412 -0.7234 1.2488 9 1 1.6331 -1.7337 1.2767 10 6 1.6073 0.0298 2.4798 11 8 2.3856 0.7693 3.0441 12 7 0.3543 -0.1184 2.9536 13 6 -0.0407 0.5672 4.0733 14 1 0.6522 1.2263 4.5753 15 6 -1.3326 0.4149 4.5615 16 7 -2.1761 -0.3859 3.9498 17 14 -1.8709 1.3496 6.0866 18 1 -2.4425 2.6608 5.6876 19 1 -2.8992 0.5618 6.8128 20 1 -0.6991 1.5692 6.9719 21 1 -0.3633 0.5125 0.8909 22 1 -0.3633 0.5152 -0.8892 23 1 -0.3633 -1.0276 -0.0015 24 1 3.8534 0.2479 -1.2778 25 1 3.7207 -1.3046 -2.1391 26 1 3.5865 -2.5111 0.0027 27 1 5.0536 -1.5021 -0.0300 28 1 3.9137 0.1346 1.2620 29 1 -0.2683 -0.7095 2.5021 30 1 -3.0781 -0.4919 4.2904 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306212782.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:53 Heat of formation + Delta-G solvation = -81.145462 kcal Electronic energy + Delta-G solvation = -14919.135081 eV Core-core repulsion = 12328.325757 eV Total energy + Delta-G solvation = -2590.809324 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.86064 -37.69873 -34.43034 -33.72329 -32.69251 -31.04179 -27.98916 -26.05509 -24.25640 -22.49049 -21.08943 -19.37878 -17.96198 -16.51102 -16.33641 -15.50058 -15.15614 -14.78899 -14.51475 -13.76253 -13.43508 -13.28499 -12.62832 -12.24861 -11.80369 -11.79645 -11.58760 -11.31832 -11.11407 -10.98279 -10.89575 -10.39827 -10.24428 -9.94945 -9.54151 -8.55941 -8.00730 -7.86925 -6.45274 -3.86479 3.15436 3.25425 3.31204 3.71234 3.87780 4.12221 4.39548 4.90585 4.98123 5.12560 5.15957 5.26073 5.35942 5.43941 5.60310 5.71472 5.95204 6.00969 6.11492 6.16880 6.24019 6.62281 7.11175 7.26506 7.52194 7.60624 8.01311 8.55123 9.12881 9.47977 9.98572 10.71935 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.055452 B = 0.008196 C = 0.007519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.823669 B = 3415.410083 C = 3722.977960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.064 3.936 3 H 0.060 0.940 4 O -0.379 6.379 5 C 0.020 3.980 6 C 0.022 3.978 7 N -0.663 5.663 8 C 0.050 3.950 9 H 0.097 0.903 10 C 0.450 3.550 11 O -0.586 6.586 12 N -0.556 5.556 13 C -0.303 4.303 14 H 0.104 0.896 15 C 0.025 3.975 16 N -0.898 5.898 17 Si 0.931 3.069 18 H -0.278 1.278 19 H -0.283 1.283 20 H -0.269 1.269 21 H 0.093 0.907 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.048 0.952 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.351 0.649 29 H 0.394 0.606 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.325 -1.667 -8.772 10.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.004 3.996 3 H 0.078 0.922 4 O -0.298 6.298 5 C -0.059 4.059 6 C -0.108 4.108 7 N -0.294 5.294 8 C -0.064 4.064 9 H 0.115 0.885 10 C 0.236 3.764 11 O -0.470 6.470 12 N -0.193 5.193 13 C -0.432 4.432 14 H 0.122 0.878 15 C -0.178 4.178 16 N -0.539 5.539 17 Si 0.758 3.242 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 H 0.111 0.889 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.066 0.934 25 H 0.113 0.887 26 H 0.099 0.901 27 H 0.103 0.897 28 H 0.171 0.829 29 H 0.229 0.771 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.564 -1.861 -8.042 9.955 hybrid contribution -0.679 0.763 -0.088 1.025 sum 4.885 -1.098 -8.130 9.548 Atomic orbital electron populations 1.21947 0.91805 1.03484 1.03797 1.22699 0.96620 0.95025 0.85280 0.92156 1.88062 1.20285 1.78732 1.42687 1.23291 0.82442 1.00145 1.00023 1.22698 1.00663 0.99239 0.88197 1.60561 1.06142 1.25615 1.37097 1.22069 0.89274 1.00851 0.94249 0.88475 1.19417 0.83532 0.86565 0.86936 1.90507 1.52992 1.42014 1.61522 1.41993 1.10395 1.40925 1.25973 1.19731 0.96993 1.23024 1.03481 0.87825 1.25272 0.95711 0.97314 0.99455 1.69611 1.06589 1.36918 1.40774 0.85847 0.78481 0.78988 0.80923 1.20372 1.20868 1.19382 0.88883 0.92044 0.91559 0.93387 0.88683 0.90080 0.89691 0.82911 0.77089 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.75 37.16 0.32 -2.27 16 2 C 0.06 1.10 2.90 -26.68 -0.08 1.02 16 3 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 4 O -0.38 -6.07 10.48 -35.23 -0.37 -6.44 16 5 C 0.02 0.25 7.00 37.21 0.26 0.51 16 6 C 0.02 0.29 6.76 -3.71 -0.03 0.27 16 7 N -0.66 -11.55 6.39 -107.67 -0.69 -12.24 16 8 C 0.05 0.95 2.54 -68.75 -0.17 0.77 16 9 H 0.10 1.83 8.14 -51.93 -0.42 1.40 16 10 C 0.45 10.77 6.59 -10.99 -0.07 10.70 16 11 O -0.59 -15.94 15.71 5.55 0.09 -15.85 16 12 N -0.56 -13.97 4.08 -10.96 -0.04 -14.02 16 13 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 14 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 15 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 16 N -0.90 -23.99 13.05 55.50 0.72 -23.27 16 17 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 H 0.09 1.81 5.95 -51.92 -0.31 1.50 16 22 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 23 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.08 1.07 8.14 -51.92 -0.42 0.64 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.35 6.23 8.24 -39.29 -0.32 5.91 16 29 H 0.39 9.50 6.72 -40.82 -0.27 9.23 16 30 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 251.82 15.07 3.79 3.79 Total: -1.00 -30.13 251.82 -5.32 -35.45 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -3.80 Total: 13.72 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 0.00 Total: 3.07 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.01 Total: -49.52 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.28 Total: -22.29 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.13 -5.32 -35.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306212782.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.691 kcal (2) G-P(sol) polarization free energy of solvation -30.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds