Wall clock time and date at job start Mon Mar 30 2020 02:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.50631 * 2 1 4 4 O 1.43091 * 109.49168 * 239.88697 * 2 1 3 5 5 C 1.43020 * 113.68830 * 181.41571 * 4 2 1 6 6 C 1.53095 * 109.29124 * 58.65137 * 5 4 2 7 7 N 1.47016 * 109.26218 * 303.13039 * 6 5 4 8 8 C 1.47013 * 110.75310 * 58.61097 * 7 6 5 9 9 H 1.09000 * 109.50641 * 61.32241 * 8 7 6 10 10 C 1.50699 * 109.50711 * 181.45223 * 8 7 6 11 11 O 1.21292 * 120.00102 * 20.00607 * 10 8 7 12 12 N 1.34777 * 119.99669 * 200.00355 * 10 8 7 13 13 C 1.37105 * 119.99697 * 180.02562 * 12 10 8 14 14 H 1.08000 * 119.99727 * 0.02562 * 13 12 10 15 15 C 1.38943 * 119.99808 * 179.97438 * 13 12 10 16 16 N 1.31417 * 120.00403 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99832 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47294 * 90.00122 * 17 15 13 19 19 H 1.48510 * 109.47158 * 209.99928 * 17 15 13 20 20 H 1.48501 * 109.47053 * 329.99791 * 17 15 13 21 21 H 1.09009 * 109.46932 * 299.91102 * 1 2 3 22 22 H 1.09003 * 109.47059 * 59.90992 * 1 2 3 23 23 H 1.08994 * 109.47261 * 179.91790 * 1 2 3 24 24 H 1.09002 * 109.50941 * 298.69500 * 5 4 2 25 25 H 1.09003 * 109.50633 * 178.60964 * 5 4 2 26 26 H 1.09008 * 109.50518 * 63.06430 * 6 5 4 27 27 H 1.09003 * 109.51010 * 183.19294 * 6 5 4 28 28 H 1.00898 * 110.99377 * 294.84113 * 7 6 5 29 29 H 0.96999 * 120.00432 * 359.97438 * 12 10 8 30 30 H 0.96997 * 119.99953 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 8 2.0075 -0.6768 -1.1669 5 6 3.4334 -0.7573 -1.2413 6 6 3.9639 -1.4884 -0.0052 7 7 3.5093 -0.7881 1.2048 8 6 2.0412 -0.7234 1.2488 9 1 1.6331 -1.7337 1.2767 10 6 1.6073 0.0298 2.4798 11 8 2.3856 0.7693 3.0441 12 7 0.3543 -0.1184 2.9536 13 6 -0.0407 0.5672 4.0733 14 1 0.6522 1.2263 4.5753 15 6 -1.3326 0.4149 4.5615 16 7 -2.1761 -0.3859 3.9498 17 14 -1.8709 1.3496 6.0866 18 1 -2.4425 2.6608 5.6876 19 1 -2.8992 0.5618 6.8128 20 1 -0.6991 1.5692 6.9719 21 1 -0.3633 0.5125 0.8909 22 1 -0.3633 0.5152 -0.8892 23 1 -0.3633 -1.0276 -0.0015 24 1 3.8534 0.2479 -1.2778 25 1 3.7207 -1.3046 -2.1391 26 1 3.5865 -2.5111 0.0027 27 1 5.0536 -1.5021 -0.0300 28 1 3.9137 0.1346 1.2620 29 1 -0.2683 -0.7095 2.5021 30 1 -3.0781 -0.4919 4.2904 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306212782.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:53 Heat of formation + Delta-G solvation = -105.099830 kcal Electronic energy + Delta-G solvation = -14920.173821 eV Core-core repulsion = 12328.325757 eV Total energy + Delta-G solvation = -2591.848064 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.33726 -39.41416 -36.18960 -35.31016 -34.17617 -32.94443 -29.27022 -27.75558 -25.95981 -23.75310 -22.46504 -21.16017 -19.94318 -18.21270 -17.61673 -17.04706 -16.65406 -16.23577 -16.07357 -15.42153 -15.10031 -15.00975 -13.93506 -13.74765 -13.54575 -13.31866 -13.12226 -12.89519 -12.66458 -12.41274 -12.26650 -12.11383 -12.07743 -11.51429 -11.18828 -10.47099 -10.03396 -9.23029 -8.48140 -5.97543 1.36974 1.42753 1.55253 1.91757 2.27087 2.61794 2.90832 3.15671 3.39992 3.67054 3.80874 4.07226 4.10781 4.22560 4.32344 4.46906 4.51244 4.69802 4.80163 4.88640 4.96436 5.22226 5.40043 5.76224 5.96906 6.06822 6.26531 6.54427 7.08282 7.49070 8.03012 8.68693 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.055452 B = 0.008196 C = 0.007519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.823669 B = 3415.410083 C = 3722.977960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.075 3.925 3 H 0.052 0.948 4 O -0.384 6.384 5 C 0.015 3.985 6 C 0.023 3.977 7 N -0.679 5.679 8 C 0.061 3.939 9 H 0.101 0.899 10 C 0.448 3.552 11 O -0.624 6.624 12 N -0.560 5.560 13 C -0.338 4.338 14 H 0.081 0.919 15 C -0.008 4.008 16 N -0.915 5.915 17 Si 0.993 3.007 18 H -0.269 1.269 19 H -0.270 1.270 20 H -0.274 1.274 21 H 0.064 0.936 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.055 0.945 25 H 0.129 0.871 26 H 0.084 0.916 27 H 0.114 0.886 28 H 0.347 0.653 29 H 0.398 0.602 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.464 -2.130 -9.701 11.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.015 3.985 3 H 0.070 0.930 4 O -0.303 6.303 5 C -0.063 4.063 6 C -0.106 4.106 7 N -0.310 5.310 8 C -0.053 4.053 9 H 0.119 0.881 10 C 0.235 3.765 11 O -0.511 6.511 12 N -0.197 5.197 13 C -0.467 4.467 14 H 0.099 0.901 15 C -0.209 4.209 16 N -0.555 5.555 17 Si 0.817 3.183 18 H -0.195 1.195 19 H -0.195 1.195 20 H -0.198 1.198 21 H 0.083 0.917 22 H 0.097 0.903 23 H 0.091 0.909 24 H 0.073 0.927 25 H 0.147 0.853 26 H 0.102 0.898 27 H 0.132 0.868 28 H 0.166 0.834 29 H 0.233 0.767 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.698 -2.351 -9.006 10.913 hybrid contribution -0.648 0.868 0.145 1.093 sum 5.050 -1.483 -8.861 10.306 Atomic orbital electron populations 1.21863 0.91819 1.03745 1.03221 1.22434 0.96623 0.94390 0.85095 0.93018 1.88055 1.22493 1.78395 1.41355 1.23561 0.80517 1.01102 1.01115 1.22858 1.02427 0.98709 0.86584 1.60562 1.04787 1.25677 1.39984 1.21881 0.90770 1.00163 0.92478 0.88095 1.20267 0.82627 0.85885 0.87763 1.90470 1.53877 1.43681 1.63060 1.42019 1.11034 1.40942 1.25684 1.19703 0.97588 1.24398 1.05059 0.90141 1.26043 0.95130 0.97767 1.01936 1.69669 1.06936 1.37180 1.41708 0.84922 0.77953 0.78108 0.77322 1.19474 1.19507 1.19841 0.91704 0.90263 0.90902 0.92684 0.85272 0.89798 0.86751 0.83370 0.76680 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.97 8.75 71.98 0.63 -4.34 16 2 C 0.07 2.52 2.90 30.63 0.09 2.61 16 3 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 4 O -0.38 -11.36 10.48 -148.98 -1.56 -12.92 16 5 C 0.01 0.33 7.00 72.01 0.50 0.83 16 6 C 0.02 0.55 6.76 86.31 0.58 1.13 16 7 N -0.68 -22.92 6.39 -494.56 -3.16 -26.08 16 8 C 0.06 2.31 2.54 44.18 0.11 2.42 16 9 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 10 C 0.45 21.88 6.59 87.66 0.58 22.46 16 11 O -0.62 -34.96 15.71 -3.07 -0.05 -35.01 16 12 N -0.56 -28.87 4.08 -306.99 -1.25 -30.13 16 13 C -0.34 -19.12 9.68 84.04 0.81 -18.31 16 14 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 15 C -0.01 -0.43 5.50 84.92 0.47 0.04 16 16 N -0.91 -48.68 13.05 21.66 0.28 -48.40 16 17 Si 0.99 42.49 29.55 68.60 2.03 44.52 16 18 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 19 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 H 0.06 2.55 5.95 -2.38 -0.01 2.54 16 22 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 23 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 24 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 27 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.35 12.13 8.24 -89.70 -0.74 11.39 16 29 H 0.40 19.60 6.72 -92.71 -0.62 18.97 16 30 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -64.69 251.82 -0.14 -64.83 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: -0.20 Total: 36.33 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 3.78 Total: 6.85 kcal Atomic # 7 Polarization: -100.47 SS G_CDS: -4.13 Total: -104.60 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: -1.61 Total: -47.93 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -64.69 -0.14 -64.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306212782.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.269 kcal (2) G-P(sol) polarization free energy of solvation -64.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds