Wall clock time and date at job start Mon Mar 30 2020 02:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.54092 * 2 1 4 4 O 1.43020 * 109.50381 * 120.10953 * 2 1 3 5 5 C 1.43013 * 113.73475 * 178.60444 * 4 2 1 6 6 C 1.53093 * 109.26228 * 301.33091 * 5 4 2 7 7 N 1.47016 * 109.26089 * 56.85010 * 6 5 4 8 8 C 1.47017 * 110.74783 * 301.38789 * 7 6 5 9 9 H 1.09003 * 109.51022 * 178.59282 * 8 7 6 10 10 C 1.50702 * 109.50537 * 298.67651 * 8 7 6 11 11 O 1.21291 * 120.00005 * 14.56345 * 10 8 7 12 12 N 1.34776 * 119.99815 * 194.28253 * 10 8 7 13 13 C 1.37097 * 119.99829 * 180.27609 * 12 10 8 14 14 H 1.08000 * 120.00089 * 0.02562 * 13 12 10 15 15 C 1.38956 * 119.99778 * 180.02562 * 13 12 10 16 16 N 1.31402 * 120.00070 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99726 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46970 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47159 * 119.99951 * 17 15 13 20 20 H 1.48501 * 109.46770 * 240.00008 * 17 15 13 21 21 H 1.08998 * 109.47199 * 180.10842 * 1 2 3 22 22 H 1.08996 * 109.47409 * 300.10504 * 1 2 3 23 23 H 1.08997 * 109.47322 * 60.10948 * 1 2 3 24 24 H 1.08998 * 109.50468 * 181.39393 * 5 4 2 25 25 H 1.09004 * 109.51008 * 61.26764 * 5 4 2 26 26 H 1.09005 * 109.50763 * 296.91291 * 6 5 4 27 27 H 1.09000 * 109.54846 * 176.80247 * 6 5 4 28 28 H 1.00897 * 111.00478 * 177.61073 * 7 6 5 29 29 H 0.96999 * 120.00100 * 0.27543 * 12 10 8 30 30 H 0.97002 * 120.00040 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 8 2.0075 -0.6763 1.1662 5 6 3.4334 -0.7569 1.2416 6 6 3.9640 -1.4884 0.0058 7 7 3.5094 -0.7884 -1.2044 8 6 2.0413 -0.7239 -1.2484 9 1 1.7273 -0.1801 -2.1394 10 6 1.4771 -2.1208 -1.2866 11 8 2.1842 -3.0681 -1.0149 12 7 0.1853 -2.3170 -1.6171 13 6 -0.3294 -3.5874 -1.6464 14 1 0.3002 -4.4308 -1.4041 15 6 -1.6611 -3.7897 -1.9877 16 7 -2.4269 -2.7635 -2.2829 17 14 -2.3626 -5.5206 -2.0268 18 1 -1.3025 -6.4928 -1.6576 19 1 -3.4857 -5.6215 -1.0606 20 1 -2.8570 -5.8235 -3.3940 21 1 -0.3633 -1.0276 0.0019 22 1 -0.3634 0.5154 0.8890 23 1 -0.3634 0.5121 -0.8909 24 1 3.7200 -1.3042 2.1396 25 1 3.8534 0.2483 1.2778 26 1 3.5867 -2.5110 -0.0017 27 1 5.0536 -1.5027 0.0303 28 1 3.8771 -1.2269 -2.0355 29 1 -0.3802 -1.5595 -1.8343 30 1 -3.3566 -2.9047 -2.5208 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306212784.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:55 Heat of formation + Delta-G solvation = -71.391927 kcal Electronic energy + Delta-G solvation = -15261.809531 eV Core-core repulsion = 12671.423151 eV Total energy + Delta-G solvation = -2590.386379 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.88161 -37.24747 -34.56822 -33.46251 -32.61631 -30.90415 -27.88417 -25.93197 -24.37903 -22.29842 -20.98162 -18.97758 -17.70362 -16.51195 -16.18807 -15.39402 -14.94007 -14.62848 -14.41517 -13.81350 -13.46982 -13.23178 -12.99698 -11.89377 -11.79637 -11.61508 -11.51023 -11.14548 -10.96200 -10.69941 -10.32714 -10.26170 -10.13243 -9.58433 -9.27784 -9.19117 -8.00030 -7.48186 -6.45878 -3.86641 3.12943 3.24657 3.31757 3.75911 4.13527 4.20986 4.56137 4.95166 5.13607 5.34870 5.40929 5.53321 5.67267 5.70298 5.82380 5.91497 6.03152 6.18495 6.28817 6.33959 6.75237 6.84243 7.20701 7.51686 7.60508 7.62271 8.01198 8.55598 9.13021 9.47979 9.99179 10.70794 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.046073 B = 0.009556 C = 0.008839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.584146 B = 2929.468748 C = 3167.037039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.107 3.893 3 H 0.063 0.937 4 O -0.376 6.376 5 C 0.069 3.931 6 C -0.012 4.012 7 N -0.662 5.662 8 C 0.038 3.962 9 H 0.098 0.902 10 C 0.422 3.578 11 O -0.592 6.592 12 N -0.554 5.554 13 C -0.302 4.302 14 H 0.102 0.898 15 C 0.024 3.976 16 N -0.898 5.898 17 Si 0.929 3.071 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.281 1.281 21 H 0.089 0.911 22 H 0.062 0.938 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.045 0.955 26 H 0.102 0.898 27 H 0.069 0.931 28 H 0.343 0.657 29 H 0.394 0.606 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.787 6.079 2.500 8.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.048 3.952 3 H 0.081 0.919 4 O -0.295 6.295 5 C -0.008 4.008 6 C -0.141 4.141 7 N -0.292 5.292 8 C -0.077 4.077 9 H 0.116 0.884 10 C 0.207 3.793 11 O -0.478 6.478 12 N -0.190 5.190 13 C -0.432 4.432 14 H 0.120 0.880 15 C -0.178 4.178 16 N -0.539 5.539 17 Si 0.756 3.244 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.207 1.207 21 H 0.108 0.892 22 H 0.081 0.919 23 H 0.091 0.909 24 H 0.107 0.893 25 H 0.063 0.937 26 H 0.119 0.881 27 H 0.087 0.913 28 H 0.160 0.840 29 H 0.230 0.770 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.997 6.007 3.037 9.015 hybrid contribution -0.763 -1.157 -0.691 1.549 sum 5.234 4.850 2.346 7.511 Atomic orbital electron populations 1.22120 0.92449 1.05522 1.02206 1.21983 0.95176 0.94243 0.83784 0.91869 1.88016 1.20846 1.78485 1.42115 1.22541 0.81370 0.99080 0.97802 1.23086 0.99350 1.01479 0.90213 1.61048 1.06462 1.55889 1.05771 1.22221 0.89682 0.95528 1.00227 0.88403 1.20727 0.83575 0.90578 0.84416 1.90327 1.58801 1.43464 1.55256 1.42245 1.08735 1.09472 1.58561 1.19776 0.94448 0.85399 1.43564 0.87969 1.25269 0.96099 0.99467 0.96926 1.69607 1.07672 1.30296 1.46301 0.85808 0.78899 0.81908 0.77786 1.19268 1.20651 1.20725 0.89197 0.91894 0.90867 0.89282 0.93651 0.88078 0.91290 0.83963 0.77019 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 8.31 37.16 0.31 -2.58 16 2 C 0.11 1.90 3.11 -26.68 -0.08 1.82 16 3 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 4 O -0.38 -7.34 10.17 -35.23 -0.36 -7.70 16 5 C 0.07 1.14 7.01 37.21 0.26 1.40 16 6 C -0.01 -0.22 6.34 -3.71 -0.02 -0.24 16 7 N -0.66 -11.49 6.61 -107.67 -0.71 -12.20 16 8 C 0.04 0.71 3.11 -68.75 -0.21 0.50 16 9 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 10 C 0.42 10.04 6.20 -10.98 -0.07 9.97 16 11 O -0.59 -15.83 13.02 5.55 0.07 -15.76 16 12 N -0.55 -13.97 3.83 -10.96 -0.04 -14.01 16 13 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 14 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 15 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 16 N -0.90 -24.04 13.05 55.50 0.72 -23.32 16 17 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 21 H 0.09 1.92 5.65 -51.93 -0.29 1.63 16 22 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.07 1.13 8.07 -51.93 -0.42 0.71 16 24 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.10 2.17 5.02 -51.93 -0.26 1.91 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.34 5.78 8.88 -39.29 -0.35 5.43 16 29 H 0.39 9.48 6.22 -40.82 -0.25 9.23 16 30 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 244.98 15.07 3.69 3.69 Total: -1.00 -30.36 244.98 -5.33 -35.69 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -3.62 Total: 14.75 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -0.06 Total: 2.87 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: -0.03 Total: -49.53 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.29 Total: -23.46 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -30.36 -5.33 -35.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306212784.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.698 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds