Wall clock time and date at job start Mon Mar 30 2020 02:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.53717 * 2 1 4 4 O 1.43018 * 109.50858 * 120.10490 * 2 1 3 5 5 C 1.43005 * 113.73962 * 178.60748 * 4 2 1 6 6 C 1.53099 * 109.26015 * 301.33211 * 5 4 2 7 7 N 1.47014 * 109.25756 * 56.84793 * 6 5 4 8 8 C 1.47015 * 110.75334 * 301.38295 * 7 6 5 9 9 H 1.09003 * 109.50813 * 298.64205 * 8 7 6 10 10 C 1.50700 * 109.50680 * 178.54988 * 8 7 6 11 11 O 1.21293 * 119.99810 * 340.00283 * 10 8 7 12 12 N 1.34777 * 119.99675 * 160.28156 * 10 8 7 13 13 C 1.37102 * 119.99634 * 179.72687 * 12 10 8 14 14 H 1.08002 * 119.99868 * 359.97438 * 13 12 10 15 15 C 1.38945 * 119.99860 * 179.97438 * 13 12 10 16 16 N 1.31414 * 119.99894 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00219 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47208 * 89.99837 * 17 15 13 19 19 H 1.48499 * 109.47268 * 210.00491 * 17 15 13 20 20 H 1.48501 * 109.47048 * 330.00292 * 17 15 13 21 21 H 1.09000 * 109.46618 * 180.10851 * 1 2 3 22 22 H 1.08994 * 109.47111 * 300.10664 * 1 2 3 23 23 H 1.08993 * 109.46865 * 60.11071 * 1 2 3 24 24 H 1.08996 * 109.50973 * 181.39798 * 5 4 2 25 25 H 1.09001 * 109.51097 * 61.26729 * 5 4 2 26 26 H 1.09001 * 109.50513 * 296.91704 * 6 5 4 27 27 H 1.08997 * 109.54645 * 176.80524 * 6 5 4 28 28 H 1.00899 * 110.99815 * 177.60979 * 7 6 5 29 29 H 0.97001 * 120.00485 * 359.71840 * 12 10 8 30 30 H 0.97004 * 119.99542 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 8 2.0077 -0.6762 1.1662 5 6 3.4335 -0.7567 1.2417 6 6 3.9640 -1.4883 0.0059 7 7 3.5094 -0.7883 -1.2044 8 6 2.0413 -0.7239 -1.2484 9 1 1.6333 -1.7343 -1.2767 10 6 1.6073 0.0288 -2.4797 11 8 2.3857 0.7681 -3.0443 12 7 0.3526 -0.1153 -2.9503 13 6 -0.0439 0.5738 -4.0672 14 1 0.6490 1.2323 -4.5698 15 6 -1.3373 0.4248 -4.5527 16 7 -2.1806 -0.3761 -3.9408 17 14 -1.8779 1.3642 -6.0741 18 1 -1.5960 0.5510 -7.2841 19 1 -3.3343 1.6422 -5.9927 20 1 -1.1330 2.6463 -6.1549 21 1 -0.3632 -1.0277 0.0019 22 1 -0.3633 0.5155 0.8890 23 1 -0.3633 0.5121 -0.8909 24 1 3.7201 -1.3040 2.1396 25 1 3.8534 0.2485 1.2778 26 1 3.5867 -2.5108 -0.0017 27 1 5.0537 -1.5025 0.0304 28 1 3.8771 -1.2269 -2.0354 29 1 -0.2699 -0.7066 -2.4988 30 1 -3.0836 -0.4797 -4.2796 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306212785.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:57 Heat of formation + Delta-G solvation = -78.761750 kcal Electronic energy + Delta-G solvation = -14906.116824 eV Core-core repulsion = 12315.410865 eV Total energy + Delta-G solvation = -2590.705959 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.66973 -37.64348 -34.45079 -33.75054 -32.62332 -31.01552 -28.03268 -26.13167 -24.36601 -22.52222 -20.67236 -19.17445 -17.89042 -16.56889 -16.28837 -15.66109 -14.79366 -14.64792 -14.45519 -13.93177 -13.68719 -13.16394 -12.92964 -12.32104 -12.01247 -11.76219 -11.57695 -11.26039 -11.11250 -10.88380 -10.39971 -10.34322 -10.24162 -9.57397 -9.49350 -8.41352 -8.11983 -7.99330 -6.45179 -3.86320 3.15538 3.25278 3.31025 3.75023 3.95844 4.10026 4.30829 4.93908 5.05866 5.16991 5.29508 5.35327 5.40004 5.48268 5.65510 5.86332 5.91707 5.97980 6.17096 6.18538 6.35435 6.67020 7.10009 7.37928 7.52208 7.53648 8.02221 8.56773 9.13796 9.48942 10.00479 10.72132 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.055128 B = 0.008204 C = 0.007523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.786768 B = 3412.145275 C = 3721.022338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.104 3.896 3 H 0.070 0.930 4 O -0.384 6.384 5 C 0.062 3.938 6 C 0.021 3.979 7 N -0.663 5.663 8 C 0.049 3.951 9 H 0.053 0.947 10 C 0.445 3.555 11 O -0.574 6.574 12 N -0.560 5.560 13 C -0.302 4.302 14 H 0.104 0.896 15 C 0.024 3.976 16 N -0.899 5.899 17 Si 0.931 3.069 18 H -0.278 1.278 19 H -0.283 1.283 20 H -0.269 1.269 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.057 0.943 26 H 0.035 0.965 27 H 0.084 0.916 28 H 0.350 0.650 29 H 0.394 0.606 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.361 -3.060 8.002 10.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.046 3.954 3 H 0.087 0.913 4 O -0.303 6.303 5 C -0.015 4.015 6 C -0.109 4.109 7 N -0.296 5.296 8 C -0.065 4.065 9 H 0.071 0.929 10 C 0.230 3.770 11 O -0.458 6.458 12 N -0.197 5.197 13 C -0.432 4.432 14 H 0.122 0.878 15 C -0.178 4.178 16 N -0.540 5.540 17 Si 0.757 3.243 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.111 0.889 24 H 0.112 0.888 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.102 0.898 28 H 0.169 0.831 29 H 0.228 0.772 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.623 -2.051 7.978 9.973 hybrid contribution -0.683 -0.896 -0.933 1.463 sum 4.940 -2.947 7.045 9.095 Atomic orbital electron populations 1.21998 0.92084 1.03337 1.03945 1.22035 0.95213 0.95419 0.82734 0.91251 1.87963 1.20678 1.78690 1.42980 1.22613 0.81600 1.00273 0.96989 1.22630 1.00634 0.95831 0.91814 1.60212 1.07850 1.56918 1.04666 1.22035 0.89135 0.98915 0.96385 0.92883 1.19483 0.83685 0.87043 0.86779 1.90535 1.53078 1.41176 1.60969 1.42042 1.10348 1.41057 1.26286 1.19729 0.96911 1.22939 1.03617 0.87832 1.25268 0.95697 0.97377 0.99445 1.69614 1.06561 1.37106 1.40711 0.85848 0.77662 0.79812 0.80930 1.20410 1.20869 1.19367 0.91800 0.91748 0.88880 0.88849 0.92426 0.94648 0.89760 0.83059 0.77174 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 8.74 37.16 0.32 -2.38 16 2 C 0.10 1.89 2.91 -26.68 -0.08 1.81 16 3 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 4 O -0.38 -6.36 10.47 -35.23 -0.37 -6.73 16 5 C 0.06 0.84 7.01 37.21 0.26 1.10 16 6 C 0.02 0.28 6.76 -3.71 -0.03 0.26 16 7 N -0.66 -11.62 6.14 -107.67 -0.66 -12.28 16 8 C 0.05 0.95 2.53 -68.75 -0.17 0.78 16 9 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 10 C 0.45 10.72 6.55 -10.98 -0.07 10.64 16 11 O -0.57 -15.88 16.13 5.55 0.09 -15.79 16 12 N -0.56 -14.08 4.07 -10.96 -0.04 -14.13 16 13 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 14 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 15 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 16 N -0.90 -24.03 13.05 55.50 0.72 -23.31 16 17 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 22 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.09 1.84 5.94 -51.93 -0.31 1.54 16 24 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.35 5.99 8.83 -39.29 -0.35 5.64 16 29 H 0.39 9.52 6.71 -40.82 -0.27 9.25 16 30 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 252.48 15.07 3.80 3.80 Total: -1.00 -30.49 252.48 -5.30 -35.79 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -3.82 Total: 12.59 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 0.00 Total: 4.27 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.02 Total: -49.72 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.28 Total: -22.52 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.49 -5.30 -35.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306212785.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.967 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds