Wall clock time and date at job start Mon Mar 30 2020 02:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.53717 * 2 1 4 4 O 1.43018 * 109.50858 * 120.10490 * 2 1 3 5 5 C 1.43005 * 113.73962 * 178.60748 * 4 2 1 6 6 C 1.53099 * 109.26015 * 301.33211 * 5 4 2 7 7 N 1.47014 * 109.25756 * 56.84793 * 6 5 4 8 8 C 1.47015 * 110.75334 * 301.38295 * 7 6 5 9 9 H 1.09003 * 109.50813 * 298.64205 * 8 7 6 10 10 C 1.50700 * 109.50680 * 178.54988 * 8 7 6 11 11 O 1.21293 * 119.99810 * 340.00283 * 10 8 7 12 12 N 1.34777 * 119.99675 * 160.28156 * 10 8 7 13 13 C 1.37102 * 119.99634 * 179.72687 * 12 10 8 14 14 H 1.08002 * 119.99868 * 359.97438 * 13 12 10 15 15 C 1.38945 * 119.99860 * 179.97438 * 13 12 10 16 16 N 1.31414 * 119.99894 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00219 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47208 * 89.99837 * 17 15 13 19 19 H 1.48499 * 109.47268 * 210.00491 * 17 15 13 20 20 H 1.48501 * 109.47048 * 330.00292 * 17 15 13 21 21 H 1.09000 * 109.46618 * 180.10851 * 1 2 3 22 22 H 1.08994 * 109.47111 * 300.10664 * 1 2 3 23 23 H 1.08993 * 109.46865 * 60.11071 * 1 2 3 24 24 H 1.08996 * 109.50973 * 181.39798 * 5 4 2 25 25 H 1.09001 * 109.51097 * 61.26729 * 5 4 2 26 26 H 1.09001 * 109.50513 * 296.91704 * 6 5 4 27 27 H 1.08997 * 109.54645 * 176.80524 * 6 5 4 28 28 H 1.00899 * 110.99815 * 177.60979 * 7 6 5 29 29 H 0.97001 * 120.00485 * 359.71840 * 12 10 8 30 30 H 0.97004 * 119.99542 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 8 2.0077 -0.6762 1.1662 5 6 3.4335 -0.7567 1.2417 6 6 3.9640 -1.4883 0.0059 7 7 3.5094 -0.7883 -1.2044 8 6 2.0413 -0.7239 -1.2484 9 1 1.6333 -1.7343 -1.2767 10 6 1.6073 0.0288 -2.4797 11 8 2.3857 0.7681 -3.0443 12 7 0.3526 -0.1153 -2.9503 13 6 -0.0439 0.5738 -4.0672 14 1 0.6490 1.2323 -4.5698 15 6 -1.3373 0.4248 -4.5527 16 7 -2.1806 -0.3761 -3.9408 17 14 -1.8779 1.3642 -6.0741 18 1 -1.5960 0.5510 -7.2841 19 1 -3.3343 1.6422 -5.9927 20 1 -1.1330 2.6463 -6.1549 21 1 -0.3632 -1.0277 0.0019 22 1 -0.3633 0.5155 0.8890 23 1 -0.3633 0.5121 -0.8909 24 1 3.7201 -1.3040 2.1396 25 1 3.8534 0.2485 1.2778 26 1 3.5867 -2.5108 -0.0017 27 1 5.0537 -1.5025 0.0304 28 1 3.8771 -1.2269 -2.0354 29 1 -0.2699 -0.7066 -2.4988 30 1 -3.0836 -0.4797 -4.2796 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306212785.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:57 Heat of formation + Delta-G solvation = -103.024298 kcal Electronic energy + Delta-G solvation = -14907.168927 eV Core-core repulsion = 12315.410865 eV Total energy + Delta-G solvation = -2591.758062 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.19852 -39.35887 -36.18272 -35.40531 -34.14434 -32.92624 -29.32759 -27.82123 -26.12014 -23.84549 -22.14696 -20.92202 -19.85672 -18.18942 -17.68945 -17.23013 -16.49419 -16.12399 -15.98804 -15.38020 -15.33301 -14.81910 -14.58279 -13.82815 -13.54571 -13.45437 -13.08712 -12.92651 -12.60219 -12.41434 -12.19493 -12.10629 -11.63889 -11.48554 -10.89778 -10.28754 -10.03279 -9.50100 -8.48595 -5.97890 1.36691 1.42545 1.55060 1.91971 2.26722 2.65935 2.83118 3.15770 3.34025 3.77878 3.91098 4.06357 4.12472 4.25455 4.38549 4.42511 4.54982 4.71580 4.83723 4.89209 5.00293 5.23983 5.39710 5.73942 5.97067 6.12534 6.22051 6.55296 7.08624 7.49372 8.04153 8.68331 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.055128 B = 0.008204 C = 0.007523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.786768 B = 3412.145275 C = 3721.022338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.112 3.888 3 H 0.052 0.948 4 O -0.387 6.387 5 C 0.054 3.946 6 C 0.021 3.979 7 N -0.680 5.680 8 C 0.060 3.940 9 H 0.062 0.938 10 C 0.444 3.556 11 O -0.616 6.616 12 N -0.562 5.562 13 C -0.338 4.338 14 H 0.080 0.920 15 C -0.008 4.008 16 N -0.915 5.915 17 Si 0.993 3.007 18 H -0.271 1.271 19 H -0.269 1.269 20 H -0.273 1.273 21 H 0.072 0.928 22 H 0.083 0.917 23 H 0.064 0.936 24 H 0.132 0.868 25 H 0.055 0.945 26 H 0.045 0.955 27 H 0.114 0.886 28 H 0.350 0.650 29 H 0.397 0.603 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.411 -3.768 8.836 11.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.053 3.947 3 H 0.070 0.930 4 O -0.306 6.306 5 C -0.023 4.023 6 C -0.108 4.108 7 N -0.313 5.313 8 C -0.054 4.054 9 H 0.080 0.920 10 C 0.230 3.770 11 O -0.502 6.502 12 N -0.199 5.199 13 C -0.467 4.467 14 H 0.098 0.902 15 C -0.209 4.209 16 N -0.555 5.555 17 Si 0.817 3.183 18 H -0.196 1.196 19 H -0.194 1.194 20 H -0.198 1.198 21 H 0.091 0.909 22 H 0.102 0.898 23 H 0.083 0.917 24 H 0.150 0.850 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.132 0.868 28 H 0.169 0.831 29 H 0.233 0.767 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.669 -2.788 8.843 10.868 hybrid contribution -0.633 -0.704 -1.131 1.475 sum 5.036 -3.491 7.712 9.850 Atomic orbital electron populations 1.21906 0.91770 1.03732 1.03420 1.21815 0.95502 0.94435 0.82912 0.93036 1.87959 1.22757 1.78233 1.41629 1.22967 0.79803 1.00923 0.98592 1.22804 1.02401 0.95773 0.89787 1.60232 1.06395 1.58369 1.06319 1.21867 0.90712 0.98479 0.94327 0.92009 1.20300 0.82779 0.86360 0.87537 1.90496 1.54061 1.43038 1.62598 1.42059 1.10939 1.40982 1.25951 1.19698 0.97516 1.24315 1.05191 0.90175 1.26038 0.95101 0.97814 1.01909 1.69671 1.06919 1.37321 1.41613 0.84921 0.77636 0.78287 0.77464 1.19635 1.19414 1.19779 0.90933 0.89840 0.91744 0.84980 0.92657 0.93643 0.86835 0.83139 0.76745 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.14 8.74 71.98 0.63 -4.51 16 2 C 0.11 3.99 2.91 30.63 0.09 4.08 16 3 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 4 O -0.39 -11.92 10.47 -148.98 -1.56 -13.48 16 5 C 0.05 1.28 7.01 72.02 0.50 1.78 16 6 C 0.02 0.51 6.76 86.31 0.58 1.09 16 7 N -0.68 -23.09 6.14 -494.57 -3.04 -26.13 16 8 C 0.06 2.30 2.53 44.18 0.11 2.41 16 9 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 10 C 0.44 21.84 6.55 87.66 0.57 22.41 16 11 O -0.62 -35.13 16.13 -3.07 -0.05 -35.18 16 12 N -0.56 -28.98 4.07 -306.98 -1.25 -30.23 16 13 C -0.34 -19.10 9.68 84.04 0.81 -18.28 16 14 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 15 C -0.01 -0.42 5.50 84.92 0.47 0.04 16 16 N -0.92 -48.61 13.05 21.66 0.28 -48.32 16 17 Si 0.99 42.45 29.55 68.60 2.03 44.48 16 18 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 21 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 22 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 23 H 0.06 2.59 5.94 -2.39 -0.01 2.57 16 24 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.35 11.74 8.83 -89.69 -0.79 10.95 16 29 H 0.40 19.57 6.71 -92.71 -0.62 18.95 16 30 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -65.56 252.48 -0.07 -65.62 By element: Atomic # 1 Polarization: 34.46 SS G_CDS: -0.25 Total: 34.20 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 3.77 Total: 9.02 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -4.00 Total: -104.68 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -1.61 Total: -48.65 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -65.56 -0.07 -65.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306212785.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.402 kcal (2) G-P(sol) polarization free energy of solvation -65.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds