Wall clock time and date at job start Mon Mar 30 2020 02:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00432 * 2 1 4 4 C 1.50696 * 110.45712 * 294.70439 * 3 2 1 5 5 O 1.21287 * 120.00183 * 144.06680 * 4 3 2 6 6 N 1.34781 * 120.00065 * 324.06196 * 4 3 2 7 7 C 1.37095 * 120.00132 * 175.00132 * 6 4 3 8 8 H 1.07998 * 119.99859 * 359.97438 * 7 6 4 9 9 C 1.38946 * 119.99964 * 180.02562 * 7 6 4 10 10 N 1.31407 * 120.00042 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99873 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46928 * 90.00309 * 11 9 7 13 13 H 1.48502 * 109.46948 * 209.99986 * 11 9 7 14 14 H 1.48492 * 109.47470 * 330.00128 * 11 9 7 15 15 C 1.54510 * 110.51084 * 171.94606 * 3 2 1 16 16 C 1.54483 * 104.06371 * 241.35625 * 15 3 2 17 17 O 1.44432 * 104.80258 * 336.02569 * 16 15 3 18 18 C 1.44424 * 105.27530 * 40.50904 * 17 16 15 19 19 H 1.08999 * 109.46945 * 304.77126 * 1 2 3 20 20 H 1.08999 * 109.46691 * 64.76468 * 1 2 3 21 21 H 1.08992 * 109.47184 * 184.76538 * 1 2 3 22 22 H 1.00903 * 110.99893 * 236.04201 * 2 1 3 23 23 H 0.97006 * 119.99353 * 354.99654 * 6 4 3 24 24 H 0.97001 * 120.00176 * 179.97438 * 10 9 7 25 25 H 1.09003 * 110.51366 * 0.02562 * 15 3 2 26 26 H 1.08999 * 110.50562 * 122.71595 * 15 3 2 27 27 H 1.08993 * 110.37135 * 217.19400 * 16 15 3 28 28 H 1.08999 * 110.36764 * 94.85481 * 16 15 3 29 29 H 1.08997 * 110.37392 * 200.65941 * 18 17 16 30 30 H 1.09000 * 110.37447 * 78.32043 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6334 2.0746 -1.2827 5 8 1.3665 3.2577 -1.2713 6 7 1.6063 1.3889 -2.4427 7 6 1.1783 2.0022 -3.5917 8 1 0.8626 3.0347 -3.5673 9 6 1.1498 1.2951 -4.7875 10 7 0.7392 1.8828 -5.8887 11 14 1.6953 -0.4911 -4.8295 12 1 0.5280 -1.3713 -4.5688 13 1 2.2626 -0.8041 -6.1657 14 1 2.7287 -0.7178 -3.7876 15 6 3.5273 1.3632 0.2028 16 6 3.7359 2.1447 1.5189 17 8 2.5664 2.9837 1.6393 18 6 1.4599 2.1568 1.2177 19 1 -0.3633 0.5861 0.8442 20 1 -0.3633 0.4381 -0.9296 21 1 -0.3633 -1.0240 0.0854 22 1 1.8306 -0.5262 -0.7814 23 1 1.8896 0.4614 -2.4645 24 1 0.7196 1.3892 -6.7236 25 1 3.8939 0.3415 0.3025 26 1 4.0247 1.8691 -0.6247 27 1 4.6365 2.7555 1.4588 28 1 3.7982 1.4572 2.3625 29 1 0.6123 2.7769 0.9262 30 1 1.1731 1.4712 2.0151 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306281126.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:25 Heat of formation + Delta-G solvation = -96.199190 kcal Electronic energy + Delta-G solvation = -15168.385254 eV Core-core repulsion = 12576.923151 eV Total energy + Delta-G solvation = -2591.462103 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.66833 -39.23227 -36.64748 -36.07042 -33.74867 -32.09572 -29.55663 -27.45047 -26.17665 -23.69122 -23.07482 -21.10208 -20.11340 -18.39570 -17.46259 -17.12729 -16.72091 -16.12578 -15.98036 -15.57472 -15.25366 -14.81499 -14.43824 -14.25445 -13.80857 -13.45910 -13.07001 -12.64368 -12.56089 -12.51965 -12.22511 -12.06887 -11.90614 -11.62449 -11.09113 -10.73067 -10.36929 -9.55558 -8.50484 -6.13233 1.22156 1.27182 1.37475 1.74393 2.14604 2.55551 2.86095 3.01263 3.22722 3.53570 3.75345 3.97074 4.21345 4.33404 4.42493 4.52467 4.64733 4.70717 4.81644 4.84387 4.98693 4.99380 5.37447 5.58767 5.81770 5.87589 6.12370 6.45547 6.74687 7.23093 7.76704 8.66818 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.040246 B = 0.010367 C = 0.009761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.561081 B = 2700.341878 C = 2867.792984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.650 5.650 3 C 0.074 3.926 4 C 0.430 3.570 5 O -0.618 6.618 6 N -0.580 5.580 7 C -0.335 4.335 8 H 0.053 0.947 9 C -0.010 4.010 10 N -0.928 5.928 11 Si 0.958 3.042 12 H -0.250 1.250 13 H -0.271 1.271 14 H -0.232 1.232 15 C -0.137 4.137 16 C 0.047 3.953 17 O -0.396 6.396 18 C 0.080 3.920 19 H 0.075 0.925 20 H 0.005 0.995 21 H 0.104 0.896 22 H 0.347 0.653 23 H 0.385 0.615 24 H 0.282 0.718 25 H 0.126 0.874 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.095 -11.157 12.978 17.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.283 5.283 3 C -0.022 4.022 4 C 0.216 3.784 5 O -0.502 6.502 6 N -0.221 5.221 7 C -0.463 4.463 8 H 0.071 0.929 9 C -0.210 4.210 10 N -0.567 5.567 11 Si 0.777 3.223 12 H -0.174 1.174 13 H -0.195 1.195 14 H -0.155 1.155 15 C -0.176 4.176 16 C -0.029 4.029 17 O -0.314 6.314 18 C 0.002 3.998 19 H 0.094 0.906 20 H 0.023 0.977 21 H 0.123 0.877 22 H 0.166 0.834 23 H 0.221 0.779 24 H 0.091 0.909 25 H 0.144 0.856 26 H 0.079 0.921 27 H 0.121 0.879 28 H 0.113 0.887 29 H 0.087 0.913 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.889 -10.204 13.512 17.624 hybrid contribution -0.264 -0.181 -1.981 2.006 sum 4.626 -10.385 11.531 16.193 Atomic orbital electron populations 1.22456 0.86837 1.04174 1.00343 1.60852 1.08913 1.09417 1.49121 1.22595 0.98150 0.89531 0.91904 1.21638 0.82407 0.87854 0.86531 1.90557 1.54448 1.18079 1.87141 1.42012 1.59570 1.13069 1.07458 1.18985 1.42728 0.98130 0.86503 0.92887 1.26137 0.96429 1.04864 0.93559 1.69793 1.46531 1.39936 1.00460 0.85466 0.80265 0.76504 0.80040 1.17380 1.19525 1.15508 1.23035 0.90995 1.04264 0.99281 1.23619 0.89166 0.93791 0.96299 1.89126 1.17451 1.37531 1.87337 1.23232 0.90127 0.92884 0.93560 0.90581 0.97666 0.87713 0.83369 0.77912 0.90876 0.85559 0.92148 0.87923 0.88689 0.91291 0.87889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.29 10.17 127.69 1.30 1.59 16 2 N -0.65 -17.07 6.26 -491.67 -3.08 -20.15 16 3 C 0.07 2.46 0.88 3.80 0.00 2.46 16 4 C 0.43 20.20 5.46 87.66 0.48 20.68 16 5 O -0.62 -36.12 15.45 -3.05 -0.05 -36.17 16 6 N -0.58 -27.66 4.74 -306.99 -1.46 -29.11 16 7 C -0.33 -19.72 10.16 84.04 0.85 -18.87 16 8 H 0.05 3.75 7.40 -2.91 -0.02 3.73 16 9 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 10 N -0.93 -55.52 13.96 21.66 0.30 -55.22 16 11 Si 0.96 37.76 27.74 68.60 1.90 39.66 16 12 H -0.25 -9.14 7.11 99.48 0.71 -8.44 16 13 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 14 H -0.23 -7.65 6.52 99.48 0.65 -7.00 16 15 C -0.14 -3.74 6.52 31.61 0.21 -3.54 16 16 C 0.05 1.18 7.63 72.49 0.55 1.73 16 17 O -0.40 -13.67 11.65 -148.98 -1.74 -15.40 16 18 C 0.08 2.62 5.18 72.49 0.38 2.99 16 19 H 0.08 1.88 6.62 -2.39 -0.02 1.86 16 20 H 0.00 0.16 7.28 -2.39 -0.02 0.14 16 21 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 22 H 0.35 8.49 7.40 -89.69 -0.66 7.82 16 23 H 0.38 15.23 4.31 -92.70 -0.40 14.83 16 24 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 25 H 0.13 2.51 7.97 -2.39 -0.02 2.49 16 26 H 0.06 1.89 7.73 -2.39 -0.02 1.88 16 27 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.07 2.66 7.33 -2.39 -0.02 2.64 16 30 H 0.10 2.65 7.59 -2.39 -0.02 2.64 16 Total: -1.00 -76.35 248.38 0.16 -76.18 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: 0.04 Total: 33.28 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 4.24 Total: 6.94 kcal Atomic # 7 Polarization: -100.25 SS G_CDS: -4.23 Total: -104.49 kcal Atomic # 8 Polarization: -49.79 SS G_CDS: -1.78 Total: -51.57 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 1.90 Total: 39.66 kcal Total: -76.35 0.16 -76.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306281126.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.018 kcal (2) G-P(sol) polarization free energy of solvation -76.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds