Wall clock time and date at job start Mon Mar 30 2020 02:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 110.99895 * 2 1 4 4 C 1.50697 * 110.56414 * 296.10151 * 3 2 1 5 5 O 1.21302 * 119.99462 * 146.12803 * 4 3 2 6 6 N 1.34767 * 120.00240 * 326.13148 * 4 3 2 7 7 C 1.37102 * 120.00218 * 175.26954 * 6 4 3 8 8 H 1.08007 * 119.99770 * 0.02562 * 7 6 4 9 9 C 1.38949 * 120.00403 * 179.97438 * 7 6 4 10 10 N 1.31410 * 119.99891 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99899 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47449 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46829 * 119.99892 * 11 9 7 14 14 H 1.48503 * 109.47006 * 239.99724 * 11 9 7 15 15 C 1.54502 * 110.50978 * 58.78590 * 3 2 1 16 16 C 1.54486 * 104.18705 * 118.71434 * 15 3 2 17 17 O 1.44426 * 104.79911 * 23.90654 * 16 15 3 18 18 C 1.44424 * 105.27728 * 319.48891 * 17 16 15 19 19 H 1.09001 * 109.47317 * 64.36048 * 1 2 3 20 20 H 1.08998 * 109.47228 * 184.36562 * 1 2 3 21 21 H 1.08997 * 109.46737 * 304.36099 * 1 2 3 22 22 H 1.00903 * 111.00263 * 123.95952 * 2 1 3 23 23 H 0.97003 * 120.00439 * 355.26423 * 6 4 3 24 24 H 0.97000 * 119.99846 * 180.02562 * 10 9 7 25 25 H 1.08998 * 110.51591 * 359.97438 * 15 3 2 26 26 H 1.09007 * 110.50968 * 237.42644 * 15 3 2 27 27 H 1.09000 * 110.37124 * 142.74264 * 16 15 3 28 28 H 1.09000 * 110.36695 * 264.96849 * 16 15 3 29 29 H 1.08998 * 110.36806 * 159.34478 * 18 17 16 30 30 H 1.09002 * 110.37439 * 281.57427 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6056 2.0881 -1.2671 5 8 1.3763 3.2790 -1.2442 6 7 1.5116 1.4058 -2.4255 7 6 1.0636 2.0359 -3.5577 8 1 0.7864 3.0792 -3.5214 9 6 0.9672 1.3327 -4.7523 10 7 1.3058 0.0638 -4.7968 11 14 0.3561 2.1911 -6.2947 12 1 0.0425 3.6084 -5.9813 13 1 1.4085 2.1372 -7.3410 14 1 -0.8679 1.5102 -6.7882 15 6 1.4893 2.1455 1.2376 16 6 2.7775 2.5151 2.0060 17 8 3.8192 2.5058 1.0057 18 6 3.5340 1.3630 0.1699 19 1 -0.3634 0.4447 -0.9265 20 1 -0.3633 -1.0247 0.0782 21 1 -0.3633 0.5800 0.8483 22 1 1.8306 -0.5262 0.7813 23 1 1.7609 0.4690 -2.4583 24 1 1.2389 -0.4271 -5.6308 25 1 0.8481 1.5109 1.8493 26 1 0.9549 3.0455 0.9329 27 1 2.6844 3.5071 2.4478 28 1 2.9842 1.7743 2.7784 29 1 4.0222 1.4701 -0.7987 30 1 3.8596 0.4447 0.6587 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306281128.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:27 Heat of formation + Delta-G solvation = -73.875694 kcal Electronic energy + Delta-G solvation = -15082.559048 eV Core-core repulsion = 12492.064965 eV Total energy + Delta-G solvation = -2590.494084 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.97185 -37.34823 -35.10672 -33.92145 -31.13771 -30.10826 -28.85573 -25.15908 -24.36236 -22.91739 -21.47695 -18.57312 -17.78358 -16.48133 -16.27193 -15.47539 -15.12523 -14.44695 -14.38960 -13.82710 -13.35232 -12.99139 -12.87335 -12.38609 -12.18467 -11.59617 -11.40385 -11.13245 -11.08189 -10.93028 -10.59809 -10.31862 -10.19620 -9.61511 -9.45587 -8.53446 -8.09968 -7.91319 -6.39155 -3.79343 3.16281 3.27818 3.35156 3.77656 4.16792 4.20821 4.44190 4.82129 4.97945 5.13613 5.28872 5.37090 5.50671 5.67054 5.73004 5.76569 5.85423 5.97223 6.20020 6.38482 6.41948 6.45644 6.85945 7.21936 7.55934 7.58985 8.09456 8.66700 9.19360 9.62021 10.12845 10.77500 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.044747 B = 0.009153 C = 0.008607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.589494 B = 3058.400867 C = 3252.406188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.670 5.670 3 C 0.073 3.927 4 C 0.454 3.546 5 O -0.594 6.594 6 N -0.542 5.542 7 C -0.303 4.303 8 H 0.102 0.898 9 C 0.025 3.975 10 N -0.892 5.892 11 Si 0.928 3.072 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.281 1.281 15 C -0.176 4.176 16 C 0.050 3.950 17 O -0.368 6.368 18 C 0.064 3.936 19 H 0.078 0.922 20 H 0.066 0.934 21 H 0.023 0.977 22 H 0.337 0.663 23 H 0.403 0.597 24 H 0.271 0.729 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.053 0.947 29 H 0.099 0.901 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.508 -2.557 10.121 10.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.301 5.301 3 C -0.022 4.022 4 C 0.239 3.761 5 O -0.479 6.479 6 N -0.177 5.177 7 C -0.433 4.433 8 H 0.120 0.880 9 C -0.178 4.178 10 N -0.533 5.533 11 Si 0.755 3.245 12 H -0.192 1.192 13 H -0.207 1.207 14 H -0.207 1.207 15 C -0.215 4.215 16 C -0.027 4.027 17 O -0.286 6.286 18 C -0.013 4.013 19 H 0.097 0.903 20 H 0.085 0.915 21 H 0.042 0.958 22 H 0.155 0.845 23 H 0.238 0.762 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.116 0.884 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.117 0.883 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.563 -1.828 9.228 9.424 hybrid contribution -0.567 -0.193 0.129 0.612 sum -0.004 -2.020 9.356 9.572 Atomic orbital electron populations 1.22303 0.87037 1.01324 1.01921 1.60419 1.08692 1.11827 1.49188 1.22553 0.95704 0.88451 0.95486 1.19126 0.85420 0.87281 0.84303 1.90515 1.56602 1.15068 1.85713 1.41855 1.55597 1.13291 1.06942 1.19804 1.39944 0.97289 0.86279 0.88040 1.25283 0.97492 0.95605 0.99374 1.69655 1.47596 1.07978 1.28038 0.85831 0.78235 0.79509 0.80945 1.19236 1.20694 1.20743 1.23552 0.98716 1.02958 0.96305 1.23304 0.86613 1.01644 0.91111 1.89150 1.48520 1.47878 1.43062 1.23410 0.92758 0.89078 0.96095 0.90325 0.91513 0.95810 0.84494 0.76218 0.91899 0.90884 0.88368 0.89302 0.92908 0.88294 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.09 60.06 0.61 0.98 16 2 N -0.67 -10.77 5.84 -106.58 -0.62 -11.39 16 3 C 0.07 1.36 0.89 -131.02 -0.12 1.24 16 4 C 0.45 11.14 5.60 -10.99 -0.06 11.08 16 5 O -0.59 -16.70 15.18 5.54 0.08 -16.62 16 6 N -0.54 -14.12 4.70 -10.96 -0.05 -14.18 16 7 C -0.30 -8.59 9.68 -14.93 -0.14 -8.73 16 8 H 0.10 3.02 7.17 -52.48 -0.38 2.64 16 9 C 0.02 0.67 5.50 -17.47 -0.10 0.58 16 10 N -0.89 -24.48 13.05 55.50 0.72 -23.76 16 11 Si 0.93 21.18 29.55 -169.99 -5.02 16.15 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 C -0.18 -2.88 5.69 -25.16 -0.14 -3.03 16 16 C 0.05 0.74 7.63 37.94 0.29 1.03 16 17 O -0.37 -6.70 11.65 -35.23 -0.41 -7.11 16 18 C 0.06 1.12 6.88 38.11 0.26 1.38 16 19 H 0.08 1.54 7.07 -51.93 -0.37 1.18 16 20 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 21 H 0.02 0.34 6.17 -51.93 -0.32 0.02 16 22 H 0.34 4.32 8.56 -39.29 -0.34 3.98 16 23 H 0.40 10.33 7.36 -40.82 -0.30 10.03 16 24 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.07 1.00 6.40 -51.93 -0.33 0.67 16 26 H 0.10 1.90 6.78 -51.93 -0.35 1.54 16 27 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.10 1.86 7.87 -51.93 -0.41 1.45 16 30 H 0.07 0.92 7.84 -51.93 -0.41 0.52 16 LS Contribution 251.21 15.07 3.79 3.79 Total: -1.00 -31.47 251.21 -4.52 -35.99 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -3.60 Total: 12.60 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 0.60 Total: 4.53 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.05 Total: -49.33 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.33 Total: -23.73 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -31.47 -4.52 -35.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306281128.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.885 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds