Wall clock time and date at job start Mon Mar 30 2020 02:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 110.99895 * 2 1 4 4 C 1.50697 * 110.56414 * 296.10151 * 3 2 1 5 5 O 1.21302 * 119.99462 * 146.12803 * 4 3 2 6 6 N 1.34767 * 120.00240 * 326.13148 * 4 3 2 7 7 C 1.37102 * 120.00218 * 175.26954 * 6 4 3 8 8 H 1.08007 * 119.99770 * 0.02562 * 7 6 4 9 9 C 1.38949 * 120.00403 * 179.97438 * 7 6 4 10 10 N 1.31410 * 119.99891 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99899 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47449 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46829 * 119.99892 * 11 9 7 14 14 H 1.48503 * 109.47006 * 239.99724 * 11 9 7 15 15 C 1.54502 * 110.50978 * 58.78590 * 3 2 1 16 16 C 1.54486 * 104.18705 * 118.71434 * 15 3 2 17 17 O 1.44426 * 104.79911 * 23.90654 * 16 15 3 18 18 C 1.44424 * 105.27728 * 319.48891 * 17 16 15 19 19 H 1.09001 * 109.47317 * 64.36048 * 1 2 3 20 20 H 1.08998 * 109.47228 * 184.36562 * 1 2 3 21 21 H 1.08997 * 109.46737 * 304.36099 * 1 2 3 22 22 H 1.00903 * 111.00263 * 123.95952 * 2 1 3 23 23 H 0.97003 * 120.00439 * 355.26423 * 6 4 3 24 24 H 0.97000 * 119.99846 * 180.02562 * 10 9 7 25 25 H 1.08998 * 110.51591 * 359.97438 * 15 3 2 26 26 H 1.09007 * 110.50968 * 237.42644 * 15 3 2 27 27 H 1.09000 * 110.37124 * 142.74264 * 16 15 3 28 28 H 1.09000 * 110.36695 * 264.96849 * 16 15 3 29 29 H 1.08998 * 110.36806 * 159.34478 * 18 17 16 30 30 H 1.09002 * 110.37439 * 281.57427 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6056 2.0881 -1.2671 5 8 1.3763 3.2790 -1.2442 6 7 1.5116 1.4058 -2.4255 7 6 1.0636 2.0359 -3.5577 8 1 0.7864 3.0792 -3.5214 9 6 0.9672 1.3327 -4.7523 10 7 1.3058 0.0638 -4.7968 11 14 0.3561 2.1911 -6.2947 12 1 0.0425 3.6084 -5.9813 13 1 1.4085 2.1372 -7.3410 14 1 -0.8679 1.5102 -6.7882 15 6 1.4893 2.1455 1.2376 16 6 2.7775 2.5151 2.0060 17 8 3.8192 2.5058 1.0057 18 6 3.5340 1.3630 0.1699 19 1 -0.3634 0.4447 -0.9265 20 1 -0.3633 -1.0247 0.0782 21 1 -0.3633 0.5800 0.8483 22 1 1.8306 -0.5262 0.7813 23 1 1.7609 0.4690 -2.4583 24 1 1.2389 -0.4271 -5.6308 25 1 0.8481 1.5109 1.8493 26 1 0.9549 3.0455 0.9329 27 1 2.6844 3.5071 2.4478 28 1 2.9842 1.7743 2.7784 29 1 4.0222 1.4701 -0.7987 30 1 3.8596 0.4447 0.6587 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306281128.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:27 Heat of formation + Delta-G solvation = -100.227040 kcal Electronic energy + Delta-G solvation = -15083.701729 eV Core-core repulsion = 12492.064965 eV Total energy + Delta-G solvation = -2591.636764 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.50339 -39.11166 -36.53717 -35.99866 -33.19989 -31.45116 -30.22031 -27.18590 -25.66321 -24.38312 -23.00039 -20.43136 -19.73799 -18.05609 -17.71148 -17.03303 -16.63378 -16.19304 -15.80506 -15.66328 -15.00781 -14.63687 -14.39623 -13.86199 -13.72002 -13.41058 -12.95493 -12.80987 -12.45942 -12.40261 -12.29391 -12.13026 -11.91893 -11.52473 -10.88852 -10.36988 -10.00240 -9.49691 -8.47498 -5.96619 1.33783 1.39893 1.54361 1.94175 2.28185 2.87114 3.05430 3.13299 3.22749 3.62044 3.94518 4.10362 4.18293 4.29701 4.47094 4.55436 4.61912 4.67922 4.77112 4.87347 5.07535 5.09142 5.38441 5.57931 5.85053 6.01625 6.49925 6.60150 7.09841 7.57802 8.11816 8.69187 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.044747 B = 0.009153 C = 0.008607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.589494 B = 3058.400867 C = 3252.406188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.670 5.670 3 C 0.078 3.922 4 C 0.449 3.551 5 O -0.639 6.639 6 N -0.548 5.548 7 C -0.341 4.341 8 H 0.075 0.925 9 C -0.009 4.009 10 N -0.911 5.911 11 Si 0.993 3.007 12 H -0.275 1.275 13 H -0.269 1.269 14 H -0.267 1.267 15 C -0.171 4.171 16 C 0.050 3.950 17 O -0.395 6.395 18 C 0.067 3.933 19 H 0.032 0.968 20 H 0.095 0.905 21 H 0.040 0.960 22 H 0.364 0.636 23 H 0.403 0.597 24 H 0.279 0.721 25 H 0.107 0.893 26 H 0.061 0.939 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.630 -3.930 11.282 11.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.305 5.305 3 C -0.017 4.017 4 C 0.235 3.765 5 O -0.527 6.527 6 N -0.183 5.183 7 C -0.470 4.470 8 H 0.093 0.907 9 C -0.209 4.209 10 N -0.551 5.551 11 Si 0.816 3.184 12 H -0.200 1.200 13 H -0.195 1.195 14 H -0.192 1.192 15 C -0.211 4.211 16 C -0.026 4.026 17 O -0.314 6.314 18 C -0.010 4.010 19 H 0.051 0.949 20 H 0.114 0.886 21 H 0.058 0.942 22 H 0.185 0.815 23 H 0.239 0.761 24 H 0.088 0.912 25 H 0.125 0.875 26 H 0.080 0.920 27 H 0.116 0.884 28 H 0.114 0.886 29 H 0.092 0.908 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.697 -3.240 10.415 10.929 hybrid contribution -0.615 0.230 -0.187 0.683 sum 0.081 -3.009 10.227 10.661 Atomic orbital electron populations 1.22250 0.86886 1.02961 1.00148 1.60251 1.08913 1.10458 1.50917 1.22326 0.97055 0.89556 0.92741 1.20224 0.83425 0.87064 0.85774 1.90474 1.58058 1.17331 1.86815 1.41875 1.56049 1.13203 1.07183 1.19743 1.42438 0.96706 0.88161 0.90716 1.26068 0.96920 0.96263 1.01682 1.69709 1.47404 1.08767 1.29192 0.84886 0.78337 0.78018 0.77149 1.19974 1.19452 1.19231 1.23524 0.99997 1.01662 0.95931 1.23556 0.84462 1.03723 0.90851 1.89122 1.49640 1.48522 1.44083 1.23429 0.91192 0.90690 0.95719 0.94945 0.88638 0.94166 0.81467 0.76139 0.91160 0.87512 0.92016 0.88422 0.88555 0.90848 0.87273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.09 127.69 1.29 2.09 16 2 N -0.67 -20.07 5.84 -491.12 -2.87 -22.94 16 3 C 0.08 2.84 0.89 3.91 0.00 2.84 16 4 C 0.45 22.69 5.60 87.66 0.49 23.18 16 5 O -0.64 -37.66 15.18 -3.10 -0.05 -37.71 16 6 N -0.55 -29.59 4.70 -306.98 -1.44 -31.03 16 7 C -0.34 -20.06 9.68 84.04 0.81 -19.24 16 8 H 0.07 4.71 7.17 -2.91 -0.02 4.69 16 9 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 10 N -0.91 -50.05 13.05 21.66 0.28 -49.77 16 11 Si 0.99 43.70 29.55 68.60 2.03 45.73 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 13 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 14 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 15 C -0.17 -5.32 5.69 31.61 0.18 -5.14 16 16 C 0.05 1.33 7.63 72.49 0.55 1.88 16 17 O -0.40 -13.72 11.65 -148.98 -1.74 -15.46 16 18 C 0.07 2.23 6.88 72.60 0.50 2.73 16 19 H 0.03 1.27 7.07 -2.39 -0.02 1.26 16 20 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 21 H 0.04 1.06 6.17 -2.39 -0.01 1.05 16 22 H 0.36 7.77 8.56 -89.69 -0.77 7.01 16 23 H 0.40 21.20 7.36 -92.71 -0.68 20.51 16 24 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 25 H 0.11 2.54 6.40 -2.39 -0.02 2.52 16 26 H 0.06 2.39 6.78 -2.38 -0.02 2.38 16 27 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.07 2.77 7.87 -2.39 -0.02 2.76 16 30 H 0.11 2.65 7.84 -2.39 -0.02 2.63 16 Total: -1.00 -71.08 251.21 0.23 -70.85 By element: Atomic # 1 Polarization: 32.26 SS G_CDS: -0.28 Total: 31.98 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 4.30 Total: 8.34 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -4.03 Total: -103.74 kcal Atomic # 8 Polarization: -51.38 SS G_CDS: -1.78 Total: -53.16 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -71.08 0.23 -70.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306281128.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.377 kcal (2) G-P(sol) polarization free energy of solvation -71.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds