Wall clock time and date at job start Mon Mar 30 2020 02:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47370 * 2 1 4 4 O 1.41459 * 124.16543 * 255.02861 * 3 2 1 5 5 C 1.44040 * 107.84769 * 161.24628 * 4 3 2 6 6 C 1.54599 * 102.54916 * 26.89077 * 5 4 3 7 7 H 1.08996 * 110.73699 * 93.18862 * 6 5 4 8 8 N 1.46500 * 110.73529 * 216.50157 * 6 5 4 9 9 C 1.46507 * 119.99876 * 59.99813 * 8 6 5 10 10 C 1.36934 * 120.00491 * 240.00056 * 8 6 5 11 11 H 1.07998 * 119.99547 * 23.29607 * 10 8 6 12 12 C 1.38809 * 120.00078 * 203.30114 * 10 8 6 13 13 N 1.31612 * 120.00207 * 14.06358 * 12 10 8 14 14 Si 1.86803 * 119.99783 * 194.06232 * 12 10 8 15 15 H 1.48506 * 109.46939 * 90.00221 * 14 12 10 16 16 H 1.48499 * 109.47357 * 209.99992 * 14 12 10 17 17 H 1.48503 * 109.47365 * 330.00307 * 14 12 10 18 18 C 1.34775 * 124.16057 * 75.02147 * 3 2 1 19 19 O 1.21283 * 126.24007 * 1.18072 * 18 3 2 20 20 H 1.09001 * 109.47492 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47487 * 299.99980 * 1 2 3 22 22 H 1.09003 * 109.46921 * 60.00187 * 1 2 3 23 23 H 1.09003 * 109.47349 * 240.00222 * 2 1 3 24 24 H 1.08996 * 109.47083 * 120.00162 * 2 1 3 25 25 H 1.08997 * 110.78942 * 145.15315 * 5 4 3 26 26 H 1.08996 * 110.79256 * 268.62357 * 5 4 3 27 27 H 1.08997 * 109.46770 * 95.17032 * 9 8 6 28 28 H 1.08994 * 109.47014 * 215.17167 * 9 8 6 29 29 H 1.08998 * 109.46905 * 335.17858 * 9 8 6 30 30 H 0.97003 * 120.00287 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 8 2.5683 2.0293 -1.1307 5 6 2.5189 3.4492 -0.8931 6 6 2.5621 3.5332 0.6500 7 1 3.5870 3.6512 1.0015 8 7 1.7171 4.6279 1.1336 9 6 0.2820 4.6306 0.8390 10 6 2.2686 5.6486 1.8610 11 1 3.3224 5.8672 1.7717 12 6 1.4732 6.4021 2.7133 13 7 0.2703 5.9778 3.0376 14 14 2.1101 8.0184 3.3999 15 1 1.7426 9.1256 2.4810 16 1 1.5061 8.2616 4.7345 17 1 3.5880 7.9529 3.5299 18 6 1.9989 2.1908 1.0773 19 8 1.6033 1.8993 2.1862 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 3.3846 3.9452 -1.3320 26 1 1.5919 3.8739 -1.2780 27 1 -0.2615 4.1918 1.6758 28 1 -0.0552 5.6554 0.6841 29 1 0.0950 4.0464 -0.0620 30 1 -0.2855 6.5042 3.6335 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306296948.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:16 Heat of formation + Delta-G solvation = 9.808329 kcal Electronic energy + Delta-G solvation = -15081.414634 eV Core-core repulsion = 12494.549362 eV Total energy + Delta-G solvation = -2586.865272 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.94489 -36.71604 -35.51766 -33.74568 -31.49564 -29.49556 -28.38164 -26.10123 -23.88074 -23.34041 -20.79923 -19.74656 -17.21255 -16.65313 -16.08587 -15.48614 -15.01098 -14.17383 -13.75554 -13.53591 -13.46452 -13.09389 -12.87604 -12.32504 -12.14716 -11.95630 -11.58829 -11.04127 -10.91075 -10.78043 -10.59992 -10.38861 -10.03291 -9.96475 -9.27609 -8.60732 -8.20716 -6.88693 -5.80975 -3.31475 2.34990 3.13710 3.35588 3.41534 3.43691 4.36312 4.57037 5.07679 5.20828 5.22876 5.32139 5.43678 5.48341 5.53297 5.73689 5.80113 5.95686 6.08563 6.32668 6.36235 6.60418 6.78002 7.21854 7.64690 7.71735 7.73012 8.24177 8.68811 9.09108 9.69169 10.17335 11.22948 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.050835 B = 0.009070 C = 0.008501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.669055 B = 3086.378996 C = 3293.100664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.142 3.858 3 N -0.501 5.501 4 O -0.165 6.165 5 C 0.010 3.990 6 C 0.125 3.875 7 H 0.110 0.890 8 N -0.566 5.566 9 C 0.157 3.843 10 C -0.271 4.271 11 H 0.075 0.925 12 C 0.010 3.990 13 N -0.895 5.895 14 Si 0.912 3.088 15 H -0.286 1.286 16 H -0.290 1.290 17 H -0.277 1.277 18 C 0.492 3.508 19 O -0.495 6.495 20 H 0.068 0.932 21 H 0.065 0.935 22 H 0.058 0.942 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.108 0.892 26 H 0.078 0.922 27 H 0.039 0.961 28 H 0.049 0.951 29 H -0.001 1.001 30 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.363 -7.533 -8.152 11.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.023 3.977 3 N -0.285 5.285 4 O -0.168 6.168 5 C -0.069 4.069 6 C 0.010 3.990 7 H 0.127 0.873 8 N -0.287 5.287 9 C 0.013 3.987 10 C -0.400 4.400 11 H 0.093 0.907 12 C -0.190 4.190 13 N -0.537 5.537 14 Si 0.741 3.259 15 H -0.212 1.212 16 H -0.216 1.216 17 H -0.202 1.202 18 C 0.278 3.722 19 O -0.368 6.368 20 H 0.087 0.913 21 H 0.084 0.916 22 H 0.077 0.923 23 H 0.102 0.898 24 H 0.101 0.899 25 H 0.126 0.874 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.018 0.982 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.046 -7.747 -7.601 11.045 hybrid contribution 0.156 0.961 0.313 1.022 sum 2.202 -6.787 -7.288 10.199 Atomic orbital electron populations 1.22242 0.95671 1.02149 1.03211 1.21390 0.94107 0.79295 1.02948 1.50498 1.62914 1.11504 1.03592 1.90774 1.80645 1.19377 1.25986 1.24560 1.03590 0.79748 0.99000 1.21755 0.98258 0.86898 0.92064 0.87261 1.43846 1.04525 1.19114 1.61173 1.20900 0.83203 0.99465 0.95178 1.19246 0.95061 1.06239 1.19458 0.90723 1.25154 0.97023 1.00073 0.96749 1.70103 1.10000 1.37293 1.36295 0.86153 0.78363 0.83221 0.78134 1.21249 1.21593 1.20244 1.22652 0.78273 0.88015 0.83310 1.90712 1.47090 1.78550 1.20403 0.91331 0.91573 0.92262 0.89793 0.89857 0.87434 0.90383 0.94261 0.93257 0.98219 0.93412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 10.13 37.16 0.38 -1.98 16 2 C 0.14 2.02 6.94 -4.04 -0.03 1.99 16 3 N -0.50 -9.09 3.72 -59.92 -0.22 -9.31 16 4 O -0.17 -2.84 12.36 -11.40 -0.14 -2.98 16 5 C 0.01 0.17 7.65 38.00 0.29 0.46 16 6 C 0.12 2.66 3.58 -67.74 -0.24 2.42 16 7 H 0.11 2.24 7.95 -51.93 -0.41 1.83 16 8 N -0.57 -14.34 2.92 -173.27 -0.51 -14.85 16 9 C 0.16 3.94 8.09 59.85 0.48 4.42 16 10 C -0.27 -7.40 9.59 -15.06 -0.14 -7.54 16 11 H 0.08 1.94 7.87 -52.49 -0.41 1.53 16 12 C 0.01 0.29 5.08 -17.43 -0.09 0.20 16 13 N -0.89 -26.41 10.79 55.49 0.60 -25.81 16 14 Si 0.91 21.62 29.58 -169.99 -5.03 16.60 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 C 0.49 10.81 7.09 -10.48 -0.07 10.74 16 19 O -0.50 -12.75 17.81 5.56 0.10 -12.65 16 20 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 26 H 0.08 1.38 6.49 -51.93 -0.34 1.04 16 27 H 0.04 1.11 7.33 -51.93 -0.38 0.73 16 28 H 0.05 1.28 7.39 -51.93 -0.38 0.90 16 29 H 0.00 -0.02 6.58 -51.93 -0.34 -0.36 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 257.42 15.07 3.88 3.88 Total: -1.00 -32.27 257.42 -4.69 -36.96 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -3.94 Total: -2.55 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 0.57 Total: 10.71 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: -0.13 Total: -49.97 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.04 Total: -15.62 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.27 -4.69 -36.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306296948.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.768 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds