Wall clock time and date at job start Mon Mar 30 2020 02:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47370 * 2 1 4 4 O 1.41459 * 124.16543 * 255.02861 * 3 2 1 5 5 C 1.44040 * 107.84769 * 161.24628 * 4 3 2 6 6 C 1.54599 * 102.54916 * 26.89077 * 5 4 3 7 7 H 1.08996 * 110.73699 * 93.18862 * 6 5 4 8 8 N 1.46500 * 110.73529 * 216.50157 * 6 5 4 9 9 C 1.46507 * 119.99876 * 59.99813 * 8 6 5 10 10 C 1.36934 * 120.00491 * 240.00056 * 8 6 5 11 11 H 1.07998 * 119.99547 * 23.29607 * 10 8 6 12 12 C 1.38809 * 120.00078 * 203.30114 * 10 8 6 13 13 N 1.31612 * 120.00207 * 14.06358 * 12 10 8 14 14 Si 1.86803 * 119.99783 * 194.06232 * 12 10 8 15 15 H 1.48506 * 109.46939 * 90.00221 * 14 12 10 16 16 H 1.48499 * 109.47357 * 209.99992 * 14 12 10 17 17 H 1.48503 * 109.47365 * 330.00307 * 14 12 10 18 18 C 1.34775 * 124.16057 * 75.02147 * 3 2 1 19 19 O 1.21283 * 126.24007 * 1.18072 * 18 3 2 20 20 H 1.09001 * 109.47492 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47487 * 299.99980 * 1 2 3 22 22 H 1.09003 * 109.46921 * 60.00187 * 1 2 3 23 23 H 1.09003 * 109.47349 * 240.00222 * 2 1 3 24 24 H 1.08996 * 109.47083 * 120.00162 * 2 1 3 25 25 H 1.08997 * 110.78942 * 145.15315 * 5 4 3 26 26 H 1.08996 * 110.79256 * 268.62357 * 5 4 3 27 27 H 1.08997 * 109.46770 * 95.17032 * 9 8 6 28 28 H 1.08994 * 109.47014 * 215.17167 * 9 8 6 29 29 H 1.08998 * 109.46905 * 335.17858 * 9 8 6 30 30 H 0.97003 * 120.00287 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 8 2.5683 2.0293 -1.1307 5 6 2.5189 3.4492 -0.8931 6 6 2.5621 3.5332 0.6500 7 1 3.5870 3.6512 1.0015 8 7 1.7171 4.6279 1.1336 9 6 0.2820 4.6306 0.8390 10 6 2.2686 5.6486 1.8610 11 1 3.3224 5.8672 1.7717 12 6 1.4732 6.4021 2.7133 13 7 0.2703 5.9778 3.0376 14 14 2.1101 8.0184 3.3999 15 1 1.7426 9.1256 2.4810 16 1 1.5061 8.2616 4.7345 17 1 3.5880 7.9529 3.5299 18 6 1.9989 2.1908 1.0773 19 8 1.6033 1.8993 2.1862 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 3.3846 3.9452 -1.3320 26 1 1.5919 3.8739 -1.2780 27 1 -0.2615 4.1918 1.6758 28 1 -0.0552 5.6554 0.6841 29 1 0.0950 4.0464 -0.0620 30 1 -0.2855 6.5042 3.6335 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306296948.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:16 Heat of formation + Delta-G solvation = -13.151802 kcal Electronic energy + Delta-G solvation = -15082.410260 eV Core-core repulsion = 12494.549362 eV Total energy + Delta-G solvation = -2587.860898 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.55113 -38.40465 -37.36393 -35.14521 -33.44636 -30.98754 -30.03431 -28.15433 -25.41395 -24.93277 -22.47159 -21.34634 -19.13711 -18.16455 -17.77869 -17.23952 -16.62839 -15.91075 -15.34781 -15.21594 -14.90409 -14.75580 -14.58665 -13.96205 -13.69927 -13.51990 -13.04779 -12.83671 -12.61092 -12.50588 -12.22799 -12.16286 -11.93912 -11.71059 -11.07603 -10.63775 -9.70522 -8.91104 -7.89552 -5.43638 0.93643 1.41775 1.49063 1.50695 1.59456 2.46434 2.98402 3.26423 3.41395 3.71037 3.89132 4.08789 4.19034 4.20945 4.42336 4.56882 4.70211 4.73639 4.78079 4.91211 5.13381 5.20710 5.39880 5.54651 5.61339 6.18406 6.21266 6.96192 7.07164 7.67899 8.12677 9.13851 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.050835 B = 0.009070 C = 0.008501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.669055 B = 3086.378996 C = 3293.100664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.132 3.868 3 N -0.492 5.492 4 O -0.154 6.154 5 C 0.027 3.973 6 C 0.111 3.889 7 H 0.116 0.884 8 N -0.582 5.582 9 C 0.178 3.822 10 C -0.278 4.278 11 H 0.087 0.913 12 C -0.050 4.050 13 N -0.935 5.935 14 Si 0.981 3.019 15 H -0.279 1.279 16 H -0.299 1.299 17 H -0.263 1.263 18 C 0.484 3.516 19 O -0.546 6.546 20 H 0.105 0.895 21 H 0.027 0.973 22 H 0.060 0.940 23 H 0.122 0.878 24 H 0.087 0.913 25 H 0.147 0.853 26 H 0.077 0.923 27 H -0.004 1.004 28 H 0.031 0.969 29 H 0.028 0.972 30 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.746 -8.017 -10.038 13.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.014 3.986 3 N -0.274 5.274 4 O -0.156 6.156 5 C -0.052 4.052 6 C -0.002 4.002 7 H 0.133 0.867 8 N -0.304 5.304 9 C 0.033 3.967 10 C -0.408 4.408 11 H 0.105 0.895 12 C -0.246 4.246 13 N -0.580 5.580 14 Si 0.808 3.192 15 H -0.205 1.205 16 H -0.226 1.226 17 H -0.187 1.187 18 C 0.270 3.730 19 O -0.422 6.422 20 H 0.123 0.877 21 H 0.046 0.954 22 H 0.079 0.921 23 H 0.141 0.859 24 H 0.105 0.895 25 H 0.164 0.836 26 H 0.095 0.905 27 H 0.015 0.985 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.468 -8.278 -9.562 13.114 hybrid contribution -0.227 0.976 0.810 1.289 sum 3.241 -7.302 -8.752 11.850 Atomic orbital electron populations 1.22199 0.95126 1.03997 1.01309 1.21818 0.94540 0.77167 1.05046 1.50531 1.61452 1.12409 1.02983 1.90803 1.80467 1.19286 1.25059 1.24505 1.05395 0.79916 0.95336 1.22047 0.97756 0.85663 0.94697 0.86650 1.43963 1.04651 1.20376 1.61420 1.20531 0.83268 0.98306 0.94599 1.19710 0.95617 1.06669 1.18790 0.89501 1.26038 0.97354 1.03596 0.97607 1.70301 1.11488 1.38649 1.37549 0.85072 0.78317 0.79059 0.76755 1.20508 1.22593 1.18723 1.22552 0.78066 0.88926 0.83433 1.90683 1.49398 1.79603 1.22528 0.87661 0.95367 0.92119 0.85943 0.89468 0.83591 0.90520 0.98517 0.95016 0.95377 0.94065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 10.13 71.98 0.73 -3.50 16 2 C 0.13 3.39 6.94 86.38 0.60 3.99 16 3 N -0.49 -16.82 3.72 -461.88 -1.72 -18.54 16 4 O -0.15 -4.73 12.36 -38.47 -0.48 -5.20 16 5 C 0.03 0.84 7.65 72.53 0.55 1.39 16 6 C 0.11 4.61 3.58 45.12 0.16 4.77 16 7 H 0.12 4.57 7.95 -2.39 -0.02 4.55 16 8 N -0.58 -29.52 2.92 -702.09 -2.05 -31.57 16 9 C 0.18 9.11 8.09 127.77 1.03 10.14 16 10 C -0.28 -15.16 9.59 84.03 0.81 -14.36 16 11 H 0.09 4.40 7.87 -2.91 -0.02 4.38 16 12 C -0.05 -2.81 5.08 84.86 0.43 -2.38 16 13 N -0.94 -57.03 10.79 21.65 0.23 -56.80 16 14 Si 0.98 44.75 29.58 68.60 2.03 46.78 16 15 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 16 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 17 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 18 C 0.48 21.10 7.09 87.98 0.62 21.73 16 19 O -0.55 -28.80 17.81 -3.04 -0.05 -28.85 16 20 H 0.10 1.86 8.14 -2.39 -0.02 1.85 16 21 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 24 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.15 3.50 8.14 -2.39 -0.02 3.48 16 26 H 0.08 2.47 6.49 -2.39 -0.02 2.45 16 27 H 0.00 -0.21 7.33 -2.39 -0.02 -0.23 16 28 H 0.03 1.69 7.39 -2.39 -0.02 1.67 16 29 H 0.03 1.23 6.58 -2.39 -0.02 1.22 16 30 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -71.65 257.42 4.03 -67.62 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: 1.13 Total: 4.77 kcal Atomic # 6 Polarization: 16.85 SS G_CDS: 4.94 Total: 21.79 kcal Atomic # 7 Polarization: -103.36 SS G_CDS: -3.54 Total: -106.90 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -0.53 Total: -34.05 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -71.65 4.03 -67.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306296948.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.472 kcal (2) G-P(sol) polarization free energy of solvation -71.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds