Wall clock time and date at job start Mon Mar 30 2020 02:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47145 * 2 1 4 4 O 1.41454 * 124.16278 * 255.00549 * 3 2 1 5 5 C 1.44528 * 107.87831 * 198.78143 * 4 3 2 6 6 C 1.54605 * 102.32254 * 333.08836 * 5 4 3 7 7 H 1.09004 * 110.73521 * 266.75314 * 6 5 4 8 8 N 1.46493 * 110.73690 * 143.61800 * 6 5 4 9 9 C 1.46494 * 120.00415 * 302.47914 * 8 6 5 10 10 C 1.36940 * 120.00011 * 122.47835 * 8 6 5 11 11 H 1.08001 * 120.00090 * 22.95081 * 10 8 6 12 12 C 1.38812 * 120.00295 * 202.95707 * 10 8 6 13 13 N 1.31619 * 119.99939 * 11.58489 * 12 10 8 14 14 Si 1.86799 * 120.00231 * 191.59308 * 12 10 8 15 15 H 1.48503 * 109.47122 * 89.99617 * 14 12 10 16 16 H 1.48496 * 109.47156 * 209.99258 * 14 12 10 17 17 H 1.48496 * 109.47152 * 329.99830 * 14 12 10 18 18 C 1.34775 * 124.15602 * 75.00360 * 3 2 1 19 19 O 1.21275 * 126.24654 * 358.82646 * 18 3 2 20 20 H 1.09002 * 109.47020 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46430 * 299.99508 * 1 2 3 22 22 H 1.08992 * 109.47495 * 59.99454 * 1 2 3 23 23 H 1.09007 * 109.46591 * 240.00933 * 2 1 3 24 24 H 1.08992 * 109.47495 * 120.00546 * 2 1 3 25 25 H 1.08997 * 110.95099 * 214.88039 * 5 4 3 26 26 H 1.08995 * 110.85394 * 91.24784 * 5 4 3 27 27 H 1.09001 * 109.47310 * 93.86878 * 9 8 6 28 28 H 1.09000 * 109.47402 * 213.87397 * 9 8 6 29 29 H 1.09007 * 109.46859 * 333.87458 * 9 8 6 30 30 H 0.96999 * 120.00307 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 8 2.5687 2.0292 -1.1306 5 6 3.3254 3.1688 -0.6643 6 6 2.6162 3.5141 0.6654 7 1 1.8444 4.2674 0.5069 8 7 3.5841 3.9687 1.6667 9 6 4.7034 3.1043 2.0489 10 6 3.4426 5.2017 2.2454 11 1 2.4744 5.6797 2.2681 12 6 4.5436 5.8373 2.8029 13 7 5.7546 5.3724 2.5799 14 14 4.3065 7.3522 3.8697 15 1 4.1398 6.9389 5.2863 16 1 5.4950 8.2342 3.7481 17 1 3.0963 8.0877 3.4231 18 6 1.9985 2.1909 1.0773 19 8 1.5661 1.9125 2.1756 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3632 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8898 23 1 1.8933 -0.5137 -0.8902 24 1 1.8934 -0.5139 0.8898 25 1 3.2539 3.9984 -1.3677 26 1 4.3663 2.8978 -0.4884 27 1 5.5767 3.3526 1.4458 28 1 4.9352 3.2549 3.1033 29 1 4.4310 2.0621 1.8821 30 1 6.5239 5.8163 2.9697 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306296954.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:18 Heat of formation + Delta-G solvation = 8.383480 kcal Electronic energy + Delta-G solvation = -14986.000433 eV Core-core repulsion = 12399.073375 eV Total energy + Delta-G solvation = -2586.927058 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.98250 -36.77212 -35.56032 -33.79944 -31.49358 -29.52716 -28.39973 -26.11461 -23.96140 -23.34509 -20.79591 -19.78882 -17.22585 -16.77993 -16.07335 -15.61777 -14.63395 -14.46544 -13.75162 -13.68717 -13.48053 -13.18430 -12.75948 -12.64601 -12.10427 -11.93104 -11.38547 -11.13888 -10.93900 -10.89807 -10.55932 -10.33808 -10.13788 -9.97725 -9.37824 -8.61236 -8.26487 -6.92746 -5.84246 -3.32988 2.30801 3.02015 3.35993 3.42416 3.43580 4.31946 4.57333 5.03082 5.16177 5.19361 5.23935 5.39474 5.47599 5.54490 5.69067 5.78011 5.91802 6.13040 6.21864 6.36662 6.63602 6.70293 7.27784 7.57881 7.64071 7.72598 8.22217 8.57542 9.08590 9.67538 10.15026 11.21097 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.054693 B = 0.008491 C = 0.008096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.830252 B = 3296.867277 C = 3457.586838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.142 3.858 3 N -0.498 5.498 4 O -0.166 6.166 5 C 0.010 3.990 6 C 0.129 3.871 7 H 0.110 0.890 8 N -0.569 5.569 9 C 0.162 3.838 10 C -0.264 4.264 11 H 0.073 0.927 12 C 0.008 3.992 13 N -0.905 5.905 14 Si 0.913 3.087 15 H -0.286 1.286 16 H -0.290 1.290 17 H -0.277 1.277 18 C 0.496 3.504 19 O -0.504 6.504 20 H 0.069 0.931 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.109 0.891 26 H 0.081 0.919 27 H 0.036 0.964 28 H 0.052 0.948 29 H -0.006 1.006 30 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.648 -7.354 -6.767 11.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.022 3.978 3 N -0.281 5.281 4 O -0.169 6.169 5 C -0.069 4.069 6 C 0.014 3.986 7 H 0.128 0.872 8 N -0.290 5.290 9 C 0.018 3.982 10 C -0.393 4.393 11 H 0.091 0.909 12 C -0.191 4.191 13 N -0.549 5.549 14 Si 0.743 3.257 15 H -0.212 1.212 16 H -0.216 1.216 17 H -0.203 1.203 18 C 0.282 3.718 19 O -0.378 6.378 20 H 0.087 0.913 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.104 0.896 24 H 0.100 0.900 25 H 0.127 0.873 26 H 0.099 0.901 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.013 0.987 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.723 -7.553 -6.306 11.383 hybrid contribution 0.187 0.888 0.439 1.008 sum -5.536 -6.665 -5.867 10.464 Atomic orbital electron populations 1.22210 0.95474 1.02224 1.03063 1.21395 0.94218 0.79083 1.03096 1.50343 1.61772 1.11540 1.04447 1.90867 1.69323 1.43769 1.12914 1.24733 0.96593 0.87247 0.98373 1.21610 0.94397 0.93385 0.89179 0.87197 1.43659 1.26739 1.16295 1.42313 1.20860 0.89171 0.87685 1.00472 1.19262 0.93894 0.93621 1.32502 0.90919 1.25046 0.94935 0.98432 1.00676 1.70065 0.97233 1.41630 1.45997 0.86125 0.77138 0.81958 0.80526 1.21242 1.21587 1.20269 1.22428 0.78161 0.88252 0.82949 1.90677 1.47481 1.78818 1.20793 0.91262 0.91720 0.92116 0.89634 0.90025 0.87263 0.90059 0.94562 0.92962 0.98699 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 10.13 37.16 0.38 -1.68 16 2 C 0.14 1.93 6.94 -4.04 -0.03 1.90 16 3 N -0.50 -8.84 3.73 -59.91 -0.22 -9.06 16 4 O -0.17 -2.88 12.38 -11.40 -0.14 -3.02 16 5 C 0.01 0.17 7.77 38.00 0.30 0.47 16 6 C 0.13 2.75 3.58 -67.74 -0.24 2.50 16 7 H 0.11 2.24 7.93 -51.93 -0.41 1.83 16 8 N -0.57 -14.48 2.92 -173.26 -0.51 -14.99 16 9 C 0.16 4.10 7.75 59.84 0.46 4.56 16 10 C -0.26 -7.24 9.61 -15.06 -0.14 -7.39 16 11 H 0.07 1.95 7.84 -52.49 -0.41 1.54 16 12 C 0.01 0.22 5.12 -17.43 -0.09 0.13 16 13 N -0.91 -25.85 10.64 55.49 0.59 -25.26 16 14 Si 0.91 21.71 29.57 -169.99 -5.03 16.68 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 18 C 0.50 10.49 6.59 -10.48 -0.07 10.42 16 19 O -0.50 -12.11 17.76 5.56 0.10 -12.01 16 20 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 24 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 26 H 0.08 1.55 7.09 -51.93 -0.37 1.18 16 27 H 0.04 0.94 7.35 -51.93 -0.38 0.56 16 28 H 0.05 1.43 7.21 -51.93 -0.37 1.06 16 29 H -0.01 -0.13 7.18 -51.93 -0.37 -0.50 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 257.52 15.07 3.88 3.88 Total: -1.00 -31.18 257.52 -4.75 -35.93 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -3.99 Total: -3.08 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 0.56 Total: 10.92 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -0.14 Total: -49.30 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.04 Total: -15.03 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.18 -4.75 -35.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306296954.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.315 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds