Wall clock time and date at job start Mon Mar 30 2020 02:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47145 * 2 1 4 4 O 1.41454 * 124.16278 * 255.00549 * 3 2 1 5 5 C 1.44528 * 107.87831 * 198.78143 * 4 3 2 6 6 C 1.54605 * 102.32254 * 333.08836 * 5 4 3 7 7 H 1.09004 * 110.73521 * 266.75314 * 6 5 4 8 8 N 1.46493 * 110.73690 * 143.61800 * 6 5 4 9 9 C 1.46494 * 120.00415 * 302.47914 * 8 6 5 10 10 C 1.36940 * 120.00011 * 122.47835 * 8 6 5 11 11 H 1.08001 * 120.00090 * 22.95081 * 10 8 6 12 12 C 1.38812 * 120.00295 * 202.95707 * 10 8 6 13 13 N 1.31619 * 119.99939 * 11.58489 * 12 10 8 14 14 Si 1.86799 * 120.00231 * 191.59308 * 12 10 8 15 15 H 1.48503 * 109.47122 * 89.99617 * 14 12 10 16 16 H 1.48496 * 109.47156 * 209.99258 * 14 12 10 17 17 H 1.48496 * 109.47152 * 329.99830 * 14 12 10 18 18 C 1.34775 * 124.15602 * 75.00360 * 3 2 1 19 19 O 1.21275 * 126.24654 * 358.82646 * 18 3 2 20 20 H 1.09002 * 109.47020 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46430 * 299.99508 * 1 2 3 22 22 H 1.08992 * 109.47495 * 59.99454 * 1 2 3 23 23 H 1.09007 * 109.46591 * 240.00933 * 2 1 3 24 24 H 1.08992 * 109.47495 * 120.00546 * 2 1 3 25 25 H 1.08997 * 110.95099 * 214.88039 * 5 4 3 26 26 H 1.08995 * 110.85394 * 91.24784 * 5 4 3 27 27 H 1.09001 * 109.47310 * 93.86878 * 9 8 6 28 28 H 1.09000 * 109.47402 * 213.87397 * 9 8 6 29 29 H 1.09007 * 109.46859 * 333.87458 * 9 8 6 30 30 H 0.96999 * 120.00307 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 8 2.5687 2.0292 -1.1306 5 6 3.3254 3.1688 -0.6643 6 6 2.6162 3.5141 0.6654 7 1 1.8444 4.2674 0.5069 8 7 3.5841 3.9687 1.6667 9 6 4.7034 3.1043 2.0489 10 6 3.4426 5.2017 2.2454 11 1 2.4744 5.6797 2.2681 12 6 4.5436 5.8373 2.8029 13 7 5.7546 5.3724 2.5799 14 14 4.3065 7.3522 3.8697 15 1 4.1398 6.9389 5.2863 16 1 5.4950 8.2342 3.7481 17 1 3.0963 8.0877 3.4231 18 6 1.9985 2.1909 1.0773 19 8 1.5661 1.9125 2.1756 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3632 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8898 23 1 1.8933 -0.5137 -0.8902 24 1 1.8934 -0.5139 0.8898 25 1 3.2539 3.9984 -1.3677 26 1 4.3663 2.8978 -0.4884 27 1 5.5767 3.3526 1.4458 28 1 4.9352 3.2549 3.1033 29 1 4.4310 2.0621 1.8821 30 1 6.5239 5.8163 2.9697 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306296954.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:18 Heat of formation + Delta-G solvation = -13.030430 kcal Electronic energy + Delta-G solvation = -14986.929010 eV Core-core repulsion = 12399.073375 eV Total energy + Delta-G solvation = -2587.855635 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56631 -38.40786 -37.39727 -35.15374 -33.43340 -30.96175 -30.04741 -28.16949 -25.44813 -24.94067 -22.44506 -21.34964 -19.13986 -18.27129 -17.74701 -17.36942 -16.27442 -16.13901 -15.43237 -15.13789 -14.94014 -14.75647 -14.51183 -14.19253 -13.80325 -13.12582 -13.00150 -12.86782 -12.72791 -12.54560 -12.18059 -12.15193 -11.94939 -11.83986 -11.12896 -10.62550 -9.73337 -8.93467 -7.92255 -5.43753 0.91156 1.35968 1.47300 1.50251 1.58291 2.44320 2.96310 3.22231 3.37036 3.70229 3.86693 4.08647 4.15269 4.22678 4.42900 4.59436 4.68001 4.73013 4.77920 4.93088 5.17602 5.23605 5.37368 5.50170 5.59494 6.13924 6.18695 6.92865 7.04246 7.65905 8.10422 9.12058 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.054693 B = 0.008491 C = 0.008096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.830252 B = 3296.867277 C = 3457.586838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.130 3.870 3 N -0.490 5.490 4 O -0.155 6.155 5 C 0.025 3.975 6 C 0.117 3.883 7 H 0.116 0.884 8 N -0.586 5.586 9 C 0.183 3.817 10 C -0.278 4.278 11 H 0.074 0.926 12 C -0.041 4.041 13 N -0.933 5.933 14 Si 0.975 3.025 15 H -0.290 1.290 16 H -0.288 1.288 17 H -0.265 1.265 18 C 0.492 3.508 19 O -0.542 6.542 20 H 0.103 0.897 21 H 0.037 0.963 22 H 0.064 0.936 23 H 0.118 0.882 24 H 0.082 0.918 25 H 0.139 0.861 26 H 0.072 0.928 27 H 0.025 0.975 28 H 0.020 0.980 29 H 0.007 0.993 30 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.468 -7.749 -8.012 12.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.012 3.988 3 N -0.271 5.271 4 O -0.158 6.158 5 C -0.053 4.053 6 C 0.004 3.996 7 H 0.134 0.866 8 N -0.309 5.309 9 C 0.038 3.962 10 C -0.407 4.407 11 H 0.092 0.908 12 C -0.237 4.237 13 N -0.578 5.578 14 Si 0.803 3.197 15 H -0.217 1.217 16 H -0.214 1.214 17 H -0.189 1.189 18 C 0.278 3.722 19 O -0.419 6.419 20 H 0.122 0.878 21 H 0.056 0.944 22 H 0.083 0.917 23 H 0.136 0.864 24 H 0.100 0.900 25 H 0.156 0.844 26 H 0.090 0.910 27 H 0.043 0.957 28 H 0.039 0.961 29 H 0.026 0.974 30 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.573 -7.987 -7.612 12.843 hybrid contribution 0.383 0.914 0.760 1.249 sum -6.190 -7.074 -6.852 11.632 Atomic orbital electron populations 1.22159 0.94021 1.04121 1.01879 1.21849 0.95407 0.76806 1.04721 1.50473 1.60502 1.12470 1.03630 1.90893 1.69065 1.43489 1.12364 1.24575 0.95564 0.88177 0.97021 1.21862 0.94006 0.93954 0.89791 0.86600 1.43745 1.27382 1.15902 1.43828 1.20520 0.89135 0.88330 0.98186 1.19562 0.94036 0.94267 1.32814 0.90797 1.25801 0.94718 1.01296 1.01922 1.70192 0.97736 1.42898 1.46933 0.85152 0.77393 0.78807 0.78362 1.21690 1.21442 1.18949 1.22209 0.78125 0.88718 0.83178 1.90653 1.49266 1.79595 1.22369 0.87848 0.94400 0.91686 0.86412 0.89971 0.84374 0.91009 0.95718 0.96089 0.97425 0.93758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 10.13 71.98 0.73 -2.78 16 2 C 0.13 3.19 6.94 86.38 0.60 3.79 16 3 N -0.49 -16.39 3.73 -461.86 -1.72 -18.11 16 4 O -0.16 -4.96 12.38 -38.46 -0.48 -5.43 16 5 C 0.03 0.86 7.77 72.53 0.56 1.42 16 6 C 0.12 4.88 3.58 45.12 0.16 5.04 16 7 H 0.12 4.62 7.93 -2.39 -0.02 4.60 16 8 N -0.59 -29.92 2.92 -702.08 -2.05 -31.98 16 9 C 0.18 9.37 7.75 127.77 0.99 10.36 16 10 C -0.28 -15.27 9.61 84.03 0.81 -14.46 16 11 H 0.07 3.95 7.84 -2.91 -0.02 3.93 16 12 C -0.04 -2.28 5.12 84.86 0.43 -1.85 16 13 N -0.93 -53.87 10.64 21.65 0.23 -53.64 16 14 Si 0.98 44.65 29.57 68.60 2.03 46.68 16 15 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 16 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 17 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 18 C 0.49 20.43 6.59 87.99 0.58 21.01 16 19 O -0.54 -26.14 17.76 -3.01 -0.05 -26.20 16 20 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 21 H 0.04 1.02 8.09 -2.39 -0.02 1.00 16 22 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.12 2.17 8.14 -2.38 -0.02 2.15 16 24 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.14 3.92 8.14 -2.39 -0.02 3.90 16 26 H 0.07 2.63 7.09 -2.39 -0.02 2.61 16 27 H 0.02 1.30 7.35 -2.39 -0.02 1.29 16 28 H 0.02 1.16 7.21 -2.39 -0.02 1.14 16 29 H 0.01 0.35 7.18 -2.38 -0.02 0.33 16 30 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -66.69 257.52 3.95 -62.74 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: 1.12 Total: 3.40 kcal Atomic # 6 Polarization: 17.66 SS G_CDS: 4.87 Total: 22.52 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -3.54 Total: -103.72 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -0.53 Total: -31.63 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -66.69 3.95 -62.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306296954.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.713 kcal (2) G-P(sol) polarization free energy of solvation -66.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds