Wall clock time and date at job start Mon Mar 30 2020 02:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.51516 * 2 1 4 4 C 1.52877 * 109.58291 * 239.98021 * 2 1 3 5 5 N 1.47156 * 108.60855 * 187.92431 * 4 2 1 6 6 C 1.36931 * 120.98310 * 230.50178 * 5 4 2 7 7 H 1.08003 * 119.99927 * 26.46307 * 6 5 4 8 8 C 1.38814 * 120.00066 * 206.46504 * 6 5 4 9 9 N 1.31615 * 119.99814 * 16.40714 * 8 6 5 10 10 Si 1.86802 * 119.99888 * 196.68348 * 8 6 5 11 11 H 1.48500 * 109.47129 * 179.72450 * 10 8 6 12 12 H 1.48497 * 109.46996 * 299.72297 * 10 8 6 13 13 H 1.48502 * 109.47007 * 59.72300 * 10 8 6 14 14 C 1.47151 * 118.03415 * 50.22714 * 5 4 2 15 15 C 1.53296 * 108.38656 * 309.71950 * 14 5 4 16 16 H 1.09001 * 109.50654 * 292.32699 * 15 14 5 17 17 C 1.50701 * 109.51410 * 172.22597 * 15 14 5 18 18 N 1.34771 * 119.99892 * 64.99742 * 17 15 14 19 19 O 1.21273 * 119.99686 * 244.99621 * 17 15 14 20 20 O 1.42959 * 109.50968 * 120.10007 * 2 1 3 21 21 H 1.08999 * 109.47452 * 299.89967 * 1 2 3 22 22 H 1.09008 * 109.47307 * 59.90133 * 1 2 3 23 23 H 1.09004 * 109.47249 * 179.89407 * 1 2 3 24 24 H 1.09002 * 109.61907 * 68.10212 * 4 2 1 25 25 H 1.09002 * 109.52966 * 307.68996 * 4 2 1 26 26 H 0.96999 * 119.99878 * 180.02562 * 9 8 6 27 27 H 1.09007 * 109.68211 * 69.43969 * 14 5 4 28 28 H 1.08995 * 109.68433 * 189.95378 * 14 5 4 29 29 H 0.97003 * 120.00112 * 0.02562 * 18 17 15 30 30 H 0.97001 * 119.99876 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0424 -0.7206 -1.2471 5 7 3.5012 -0.8768 -1.1331 6 6 4.3325 -0.4985 -2.1534 7 1 4.0254 0.2752 -2.8415 8 6 5.5699 -1.1095 -2.3032 9 7 5.8197 -2.2483 -1.6926 10 14 6.8831 -0.3113 -3.3653 11 1 8.1062 -1.1534 -3.3563 12 1 6.3822 -0.1809 -4.7571 13 1 7.2047 1.0347 -2.8268 14 6 4.0406 -1.4458 0.1121 15 6 3.4312 -0.6850 1.2952 16 1 3.8036 0.3394 1.2999 17 6 3.8152 -1.3662 2.5834 18 7 5.1072 -1.4075 2.9646 19 8 2.9617 -1.8772 3.2769 20 8 2.0074 -0.6758 1.1658 21 1 -0.3634 0.5123 0.8909 22 1 -0.3634 0.5154 -0.8891 23 1 -0.3634 -1.0277 -0.0019 24 1 1.8043 -0.1325 -2.1334 25 1 1.5728 -1.7016 -1.3199 26 1 6.6845 -2.6750 -1.7970 27 1 3.7755 -2.5011 0.1786 28 1 5.1252 -1.3383 0.1252 29 1 5.7899 -0.9984 2.4101 30 1 5.3544 -1.8457 3.7940 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306327471.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:00 Heat of formation + Delta-G solvation = -63.281305 kcal Electronic energy + Delta-G solvation = -15071.558105 eV Core-core repulsion = 12481.523428 eV Total energy + Delta-G solvation = -2590.034677 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.44977 -37.77123 -34.57494 -33.30903 -32.25492 -31.05647 -28.18065 -25.75246 -24.22320 -21.95717 -20.41294 -19.58808 -17.42134 -16.75345 -16.27687 -15.42976 -15.18431 -14.58827 -14.18375 -13.92354 -13.51255 -13.00734 -12.73242 -12.10670 -11.89661 -11.85429 -11.23743 -10.96138 -10.70555 -10.43207 -10.38290 -10.30586 -9.82082 -9.32813 -9.27938 -9.01654 -8.61842 -6.82966 -5.92582 -3.36737 3.07782 3.29967 3.36049 3.36701 3.57418 4.35348 4.65189 5.15486 5.27499 5.41068 5.56558 5.71543 5.77622 5.95925 5.99244 6.10702 6.34165 6.41937 6.53641 6.78261 6.96386 7.10133 7.32251 7.61226 7.64180 7.90191 8.23881 8.68967 9.01906 9.64654 10.22814 11.15762 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.027975 B = 0.011956 C = 0.008921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.665267 B = 2341.300167 C = 3137.777534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.070 3.930 3 H 0.052 0.948 4 C 0.115 3.885 5 N -0.593 5.593 6 C -0.257 4.257 7 H 0.071 0.929 8 C 0.003 3.997 9 N -0.903 5.903 10 Si 0.907 3.093 11 H -0.289 1.289 12 H -0.281 1.281 13 H -0.283 1.283 14 C 0.158 3.842 15 C 0.047 3.953 16 H 0.074 0.926 17 C 0.532 3.468 18 N -0.852 5.852 19 O -0.539 6.539 20 O -0.364 6.364 21 H 0.056 0.944 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.029 0.971 26 H 0.257 0.743 27 H 0.033 0.967 28 H 0.099 0.901 29 H 0.404 0.596 30 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.920 4.664 4.340 6.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.011 3.989 3 H 0.070 0.930 4 C -0.011 4.011 5 N -0.317 5.317 6 C -0.386 4.386 7 H 0.088 0.912 8 C -0.196 4.196 9 N -0.547 5.547 10 Si 0.736 3.264 11 H -0.215 1.215 12 H -0.207 1.207 13 H -0.209 1.209 14 C 0.031 3.969 15 C -0.015 4.015 16 H 0.092 0.908 17 C 0.317 3.683 18 N -0.417 5.417 19 O -0.415 6.415 20 O -0.283 6.283 21 H 0.075 0.925 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.117 0.883 29 H 0.233 0.767 30 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -2.590 4.198 4.735 6.837 hybrid contribution 1.429 0.431 -0.698 1.648 sum -1.161 4.629 4.037 6.251 Atomic orbital electron populations 1.21686 0.93681 1.02624 1.01619 1.22562 0.94070 0.95325 0.86926 0.92956 1.21593 0.86186 0.97966 0.95369 1.44044 0.99786 1.74150 1.13688 1.19184 0.97494 1.14529 1.07388 0.91177 1.25084 0.99868 0.95322 0.99312 1.70011 1.22996 1.15238 1.46502 0.86302 0.81090 0.78655 0.80335 1.21507 1.20749 1.20889 1.21311 0.99463 0.94198 0.81919 1.22752 0.84255 1.00056 0.94482 0.90806 1.20391 0.82382 0.79091 0.86469 1.43717 1.08513 1.61884 1.27605 1.90682 1.49598 1.46048 1.55159 1.87880 1.18937 1.77956 1.43549 0.92450 0.91334 0.91965 0.91746 0.95284 0.93308 0.94869 0.88287 0.76693 0.77094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.57 37.16 0.36 -1.74 16 2 C 0.07 1.33 3.39 -26.80 -0.09 1.24 16 3 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.12 2.46 6.00 -3.75 -0.02 2.43 16 5 N -0.59 -14.75 3.05 -172.08 -0.53 -15.27 16 6 C -0.26 -6.79 9.64 -15.06 -0.15 -6.93 16 7 H 0.07 1.80 7.88 -52.48 -0.41 1.39 16 8 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 9 N -0.90 -24.99 11.14 55.49 0.62 -24.37 16 10 Si 0.91 20.59 29.59 -169.99 -5.03 15.56 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 14 C 0.16 3.73 4.69 -3.53 -0.02 3.71 16 15 C 0.05 0.98 3.19 -27.73 -0.09 0.89 16 16 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 17 C 0.53 10.36 7.45 -10.99 -0.08 10.28 16 18 N -0.85 -12.27 8.84 31.22 0.28 -11.99 16 19 O -0.54 -12.37 17.34 -14.27 -0.25 -12.62 16 20 O -0.36 -7.89 9.57 -55.07 -0.53 -8.42 16 21 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.06 1.28 7.96 -51.93 -0.41 0.87 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 27 H 0.03 0.88 8.14 -51.92 -0.42 0.45 16 28 H 0.10 2.41 6.16 -51.93 -0.32 2.09 16 29 H 0.40 5.10 8.83 -40.82 -0.36 4.74 16 30 H 0.40 4.81 8.93 -40.82 -0.36 4.45 16 LS Contribution 254.78 15.07 3.84 3.84 Total: -1.00 -32.13 254.78 -5.74 -37.87 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -3.97 Total: 5.53 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -0.18 Total: 9.88 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: 0.37 Total: -51.63 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.77 Total: -21.04 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -32.13 -5.74 -37.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306327471.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.416 kcal (2) G-P(sol) polarization free energy of solvation -32.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds