Wall clock time and date at job start Mon Mar 30 2020 02:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.51516 * 2 1 4 4 C 1.52877 * 109.58291 * 239.98021 * 2 1 3 5 5 N 1.47156 * 108.60855 * 187.92431 * 4 2 1 6 6 C 1.36931 * 120.98310 * 230.50178 * 5 4 2 7 7 H 1.08003 * 119.99927 * 26.46307 * 6 5 4 8 8 C 1.38814 * 120.00066 * 206.46504 * 6 5 4 9 9 N 1.31615 * 119.99814 * 16.40714 * 8 6 5 10 10 Si 1.86802 * 119.99888 * 196.68348 * 8 6 5 11 11 H 1.48500 * 109.47129 * 179.72450 * 10 8 6 12 12 H 1.48497 * 109.46996 * 299.72297 * 10 8 6 13 13 H 1.48502 * 109.47007 * 59.72300 * 10 8 6 14 14 C 1.47151 * 118.03415 * 50.22714 * 5 4 2 15 15 C 1.53296 * 108.38656 * 309.71950 * 14 5 4 16 16 H 1.09001 * 109.50654 * 292.32699 * 15 14 5 17 17 C 1.50701 * 109.51410 * 172.22597 * 15 14 5 18 18 N 1.34771 * 119.99892 * 64.99742 * 17 15 14 19 19 O 1.21273 * 119.99686 * 244.99621 * 17 15 14 20 20 O 1.42959 * 109.50968 * 120.10007 * 2 1 3 21 21 H 1.08999 * 109.47452 * 299.89967 * 1 2 3 22 22 H 1.09008 * 109.47307 * 59.90133 * 1 2 3 23 23 H 1.09004 * 109.47249 * 179.89407 * 1 2 3 24 24 H 1.09002 * 109.61907 * 68.10212 * 4 2 1 25 25 H 1.09002 * 109.52966 * 307.68996 * 4 2 1 26 26 H 0.96999 * 119.99878 * 180.02562 * 9 8 6 27 27 H 1.09007 * 109.68211 * 69.43969 * 14 5 4 28 28 H 1.08995 * 109.68433 * 189.95378 * 14 5 4 29 29 H 0.97003 * 120.00112 * 0.02562 * 18 17 15 30 30 H 0.97001 * 119.99876 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0424 -0.7206 -1.2471 5 7 3.5012 -0.8768 -1.1331 6 6 4.3325 -0.4985 -2.1534 7 1 4.0254 0.2752 -2.8415 8 6 5.5699 -1.1095 -2.3032 9 7 5.8197 -2.2483 -1.6926 10 14 6.8831 -0.3113 -3.3653 11 1 8.1062 -1.1534 -3.3563 12 1 6.3822 -0.1809 -4.7571 13 1 7.2047 1.0347 -2.8268 14 6 4.0406 -1.4458 0.1121 15 6 3.4312 -0.6850 1.2952 16 1 3.8036 0.3394 1.2999 17 6 3.8152 -1.3662 2.5834 18 7 5.1072 -1.4075 2.9646 19 8 2.9617 -1.8772 3.2769 20 8 2.0074 -0.6758 1.1658 21 1 -0.3634 0.5123 0.8909 22 1 -0.3634 0.5154 -0.8891 23 1 -0.3634 -1.0277 -0.0019 24 1 1.8043 -0.1325 -2.1334 25 1 1.5728 -1.7016 -1.3199 26 1 6.6845 -2.6750 -1.7970 27 1 3.7755 -2.5011 0.1786 28 1 5.1252 -1.3383 0.1252 29 1 5.7899 -0.9984 2.4101 30 1 5.3544 -1.8457 3.7940 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306327471.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:58 Heat of formation + Delta-G solvation = -87.707265 kcal Electronic energy + Delta-G solvation = -15072.617294 eV Core-core repulsion = 12481.523428 eV Total energy + Delta-G solvation = -2591.093866 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.06678 -39.39016 -36.42243 -34.80681 -33.81812 -32.93196 -29.83098 -27.49414 -25.99278 -23.66748 -21.95628 -21.24954 -19.07221 -18.45265 -17.87184 -17.09336 -16.83872 -16.26482 -15.91625 -15.59207 -15.18452 -14.74322 -14.55197 -13.62383 -13.34593 -13.17004 -13.02581 -12.72555 -12.41984 -12.32828 -12.16332 -11.99868 -11.51757 -10.95006 -10.75284 -10.70403 -10.54602 -8.78821 -7.92136 -5.40925 1.48408 1.52265 1.54576 1.60116 2.12999 2.48674 3.11443 3.25009 3.51987 3.95040 4.05558 4.07998 4.28999 4.34932 4.50430 4.72412 4.81191 4.95663 5.05333 5.14159 5.33546 5.38632 5.60153 5.85562 6.17644 6.27155 6.43221 7.02686 7.28394 7.69308 8.25839 9.14680 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.027975 B = 0.011956 C = 0.008921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.665267 B = 2341.300167 C = 3137.777534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.070 3.930 3 H 0.063 0.937 4 C 0.111 3.889 5 N -0.612 5.612 6 C -0.271 4.271 7 H 0.076 0.924 8 C -0.044 4.044 9 N -0.935 5.935 10 Si 0.974 3.026 11 H -0.294 1.294 12 H -0.279 1.279 13 H -0.272 1.272 14 C 0.171 3.829 15 C 0.054 3.946 16 H 0.093 0.907 17 C 0.532 3.468 18 N -0.824 5.824 19 O -0.578 6.578 20 O -0.383 6.383 21 H 0.069 0.931 22 H 0.097 0.903 23 H 0.054 0.946 24 H 0.078 0.922 25 H 0.013 0.987 26 H 0.255 0.745 27 H -0.007 1.007 28 H 0.090 0.910 29 H 0.416 0.584 30 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.727 6.198 4.218 7.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.012 3.988 3 H 0.081 0.919 4 C -0.015 4.015 5 N -0.335 5.335 6 C -0.401 4.401 7 H 0.094 0.906 8 C -0.240 4.240 9 N -0.580 5.580 10 Si 0.802 3.198 11 H -0.220 1.220 12 H -0.205 1.205 13 H -0.197 1.197 14 C 0.044 3.956 15 C -0.009 4.009 16 H 0.111 0.889 17 C 0.316 3.684 18 N -0.390 5.390 19 O -0.457 6.457 20 O -0.302 6.302 21 H 0.088 0.912 22 H 0.116 0.884 23 H 0.073 0.927 24 H 0.097 0.903 25 H 0.031 0.969 26 H 0.064 0.936 27 H 0.011 0.989 28 H 0.108 0.892 29 H 0.247 0.753 30 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -2.376 5.754 4.620 7.752 hybrid contribution 1.360 -0.066 -0.698 1.530 sum -1.016 5.688 3.922 6.984 Atomic orbital electron populations 1.21699 0.90642 1.02860 1.03680 1.22724 0.96388 0.94962 0.84742 0.91921 1.21762 0.84409 0.97750 0.97537 1.44336 1.01213 1.74104 1.13892 1.19541 0.98068 1.14624 1.07836 0.90626 1.25850 1.01689 0.95676 1.00779 1.70165 1.23235 1.16527 1.48062 0.85249 0.78056 0.77892 0.78644 1.21980 1.20493 1.19725 1.21037 0.98989 0.92404 0.83154 1.22647 0.83993 1.00548 0.93693 0.88946 1.20278 0.83437 0.78765 0.85930 1.43464 1.07035 1.60528 1.27998 1.90664 1.51012 1.47822 1.56202 1.87887 1.19234 1.78525 1.44586 0.91185 0.88448 0.92664 0.90318 0.96921 0.93628 0.98875 0.89238 0.75300 0.75306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.57 71.98 0.69 -2.97 16 2 C 0.07 2.56 3.39 30.55 0.10 2.66 16 3 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 4 C 0.11 4.67 6.00 86.21 0.52 5.19 16 5 N -0.61 -30.39 3.05 -698.33 -2.13 -32.52 16 6 C -0.27 -14.20 9.64 84.03 0.81 -13.39 16 7 H 0.08 3.79 7.88 -2.91 -0.02 3.77 16 8 C -0.04 -2.31 4.95 84.86 0.42 -1.89 16 9 N -0.93 -52.14 11.14 21.65 0.24 -51.90 16 10 Si 0.97 41.80 29.59 68.60 2.03 43.83 16 11 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 12 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 13 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 14 C 0.17 8.17 4.69 86.35 0.40 8.57 16 15 C 0.05 2.19 3.19 29.95 0.10 2.29 16 16 H 0.09 3.39 8.14 -2.39 -0.02 3.38 16 17 C 0.53 20.37 7.45 87.66 0.65 21.02 16 18 N -0.82 -22.57 8.84 -173.55 -1.53 -24.11 16 19 O -0.58 -26.39 17.34 15.96 0.28 -26.12 16 20 O -0.38 -16.34 9.57 -130.01 -1.24 -17.58 16 21 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 23 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.08 3.03 7.96 -2.39 -0.02 3.01 16 25 H 0.01 0.57 8.14 -2.39 -0.02 0.56 16 26 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 27 H -0.01 -0.38 8.14 -2.38 -0.02 -0.39 16 28 H 0.09 4.39 6.16 -2.39 -0.01 4.38 16 29 H 0.42 9.80 8.83 -92.71 -0.82 8.99 16 30 H 0.41 9.25 8.93 -92.71 -0.83 8.42 16 Total: -1.00 -68.58 254.78 0.84 -67.74 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -0.49 Total: 19.18 kcal Atomic # 6 Polarization: 17.79 SS G_CDS: 3.69 Total: 21.48 kcal Atomic # 7 Polarization: -105.10 SS G_CDS: -3.42 Total: -108.53 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -0.97 Total: -43.70 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -68.58 0.84 -67.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306327471.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.969 kcal (2) G-P(sol) polarization free energy of solvation -68.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds