Wall clock time and date at job start Mon Mar 30 2020 02:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.51094 * 2 1 4 4 C 1.53299 * 109.50872 * 239.90297 * 2 1 3 5 5 N 1.47153 * 108.38431 * 187.72067 * 4 2 1 6 6 C 1.36930 * 120.98230 * 230.55431 * 5 4 2 7 7 H 1.07997 * 120.00044 * 26.56679 * 6 5 4 8 8 C 1.38817 * 120.00140 * 206.55761 * 6 5 4 9 9 N 1.31616 * 119.99825 * 15.43410 * 8 6 5 10 10 Si 1.86800 * 120.00331 * 195.42856 * 8 6 5 11 11 H 1.48500 * 109.47122 * 0.02562 * 10 8 6 12 12 H 1.48489 * 109.47060 * 120.00476 * 10 8 6 13 13 H 1.48500 * 109.47088 * 240.00730 * 10 8 6 14 14 C 1.47157 * 118.03438 * 50.53612 * 5 4 2 15 15 C 1.53291 * 108.41395 * 309.44377 * 14 5 4 16 16 H 1.09005 * 109.51611 * 172.24847 * 15 14 5 17 17 C 1.50704 * 109.51583 * 292.39918 * 15 14 5 18 18 N 1.34776 * 119.99778 * 301.01420 * 17 15 14 19 19 O 1.21282 * 120.00078 * 121.01839 * 17 15 14 20 20 O 1.42957 * 109.55706 * 120.13227 * 2 1 3 21 21 H 1.09001 * 109.47320 * 180.10240 * 1 2 3 22 22 H 1.09005 * 109.47000 * 300.09681 * 1 2 3 23 23 H 1.08999 * 109.47742 * 60.09345 * 1 2 3 24 24 H 1.08999 * 109.68177 * 68.00050 * 4 2 1 25 25 H 1.08994 * 109.67979 * 307.44332 * 4 2 1 26 26 H 0.97003 * 120.00113 * 179.97438 * 9 8 6 27 27 H 1.08994 * 109.68291 * 69.18355 * 14 5 4 28 28 H 1.09000 * 109.68201 * 189.70261 * 14 5 4 29 29 H 0.97001 * 120.00218 * 0.02562 * 18 17 15 30 30 H 0.97002 * 120.00293 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0419 -0.7246 -1.2502 5 7 3.5012 -0.8746 -1.1348 6 6 4.3317 -0.4950 -2.1552 7 1 4.0226 0.2771 -2.8442 8 6 5.5709 -1.1026 -2.3040 9 7 5.8306 -2.2301 -1.6767 10 14 6.8700 -0.3199 -3.3946 11 1 6.3333 0.9340 -3.9818 12 1 8.0753 -0.0104 -2.5845 13 1 7.2340 -1.2610 -4.4842 14 6 4.0417 -1.4441 0.1098 15 6 3.4331 -0.6846 1.2942 16 1 3.7123 -1.1778 2.2253 17 6 3.9461 0.7325 1.3006 18 7 5.2701 0.9695 1.3866 19 8 3.1675 1.6596 1.2285 20 8 2.0085 -0.6762 1.1651 21 1 -0.3634 -1.0277 0.0018 22 1 -0.3633 0.5154 0.8892 23 1 -0.3634 0.5124 -0.8908 24 1 1.8021 -0.1392 -2.1378 25 1 1.5763 -1.7076 -1.3212 26 1 6.6965 -2.6549 -1.7810 27 1 3.7774 -2.4994 0.1758 28 1 5.1262 -1.3357 0.1225 29 1 5.8928 0.2280 1.4440 30 1 5.6003 1.8815 1.3904 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306327473.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:01 Heat of formation + Delta-G solvation = -82.486684 kcal Electronic energy + Delta-G solvation = -15492.368516 eV Core-core repulsion = 12901.501031 eV Total energy + Delta-G solvation = -2590.867484 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.36540 -38.81359 -36.42813 -34.81196 -33.70858 -32.83885 -29.72848 -27.46510 -25.84938 -23.56116 -22.62204 -20.85888 -18.99043 -18.45357 -17.38022 -17.18150 -16.75394 -16.29563 -15.88373 -15.50823 -15.09757 -14.63643 -14.50329 -13.50427 -13.24592 -13.14905 -12.99520 -12.77232 -12.64211 -12.41250 -12.11232 -11.88491 -11.74665 -10.96862 -10.71483 -10.57035 -10.08095 -8.71003 -7.91188 -5.37708 1.44176 1.48562 1.57877 1.66804 2.46631 2.66484 2.84647 3.22622 3.54005 4.01621 4.06151 4.27457 4.37842 4.49245 4.66740 4.74336 4.81400 4.96727 5.11090 5.22205 5.37804 5.47143 5.59174 5.96906 6.19853 6.30689 6.49971 7.06834 7.38164 7.71831 8.27994 9.14934 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.033488 B = 0.012662 C = 0.011018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.921013 B = 2210.736180 C = 2540.751974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.051 3.949 3 H 0.070 0.930 4 C 0.114 3.886 5 N -0.611 5.611 6 C -0.263 4.263 7 H 0.057 0.943 8 C -0.035 4.035 9 N -0.928 5.928 10 Si 0.964 3.036 11 H -0.278 1.278 12 H -0.279 1.279 13 H -0.293 1.293 14 C 0.159 3.841 15 C 0.046 3.954 16 H 0.150 0.850 17 C 0.511 3.489 18 N -0.830 5.830 19 O -0.583 6.583 20 O -0.373 6.373 21 H 0.064 0.936 22 H 0.063 0.937 23 H 0.084 0.916 24 H 0.060 0.940 25 H 0.022 0.978 26 H 0.255 0.745 27 H 0.020 0.980 28 H 0.093 0.907 29 H 0.412 0.588 30 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.789 2.971 5.704 6.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.007 4.007 3 H 0.088 0.912 4 C -0.012 4.012 5 N -0.335 5.335 6 C -0.392 4.392 7 H 0.075 0.925 8 C -0.231 4.231 9 N -0.574 5.574 10 Si 0.792 3.208 11 H -0.203 1.203 12 H -0.205 1.205 13 H -0.220 1.220 14 C 0.033 3.967 15 C -0.016 4.016 16 H 0.167 0.833 17 C 0.297 3.703 18 N -0.394 5.394 19 O -0.464 6.464 20 O -0.291 6.291 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.103 0.897 24 H 0.079 0.921 25 H 0.040 0.960 26 H 0.065 0.935 27 H 0.038 0.962 28 H 0.111 0.889 29 H 0.242 0.758 30 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -2.412 3.238 5.753 7.029 hybrid contribution 1.390 0.214 -0.903 1.672 sum -1.022 3.453 4.850 6.041 Atomic orbital electron populations 1.21644 0.91181 1.02843 1.02958 1.22981 0.96148 0.96661 0.84915 0.91225 1.21789 0.84877 0.97553 0.96958 1.44276 1.00799 1.74085 1.14333 1.19396 0.98129 1.14129 1.07574 0.92485 1.25608 1.01021 0.95843 1.00659 1.70107 1.22990 1.16932 1.47371 0.85278 0.79447 0.77706 0.78375 1.20312 1.20505 1.22026 1.21308 0.99430 0.93353 0.82631 1.23094 0.83120 0.92531 1.02901 0.83275 1.21458 0.83235 0.92081 0.73489 1.43648 1.06977 1.12922 1.75847 1.90549 1.56844 1.47120 1.51927 1.87846 1.19191 1.77024 1.45042 0.91738 0.91749 0.89712 0.92116 0.96018 0.93515 0.96165 0.88852 0.75753 0.76418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 9.57 71.98 0.69 -3.34 16 2 C 0.05 2.09 2.94 30.69 0.09 2.18 16 3 H 0.07 3.19 5.22 -2.39 -0.01 3.18 16 4 C 0.11 5.09 6.02 86.36 0.52 5.61 16 5 N -0.61 -30.63 2.81 -697.55 -1.96 -32.59 16 6 C -0.26 -14.18 9.65 84.04 0.81 -13.37 16 7 H 0.06 3.13 7.87 -2.91 -0.02 3.11 16 8 C -0.04 -1.85 4.98 84.86 0.42 -1.43 16 9 N -0.93 -50.37 11.07 21.65 0.24 -50.13 16 10 Si 0.96 42.72 29.58 68.60 2.03 44.75 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 12 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 13 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 14 C 0.16 7.22 4.78 86.35 0.41 7.63 16 15 C 0.05 1.78 3.75 29.95 0.11 1.89 16 16 H 0.15 4.58 8.14 -2.38 -0.02 4.56 16 17 C 0.51 19.90 6.93 87.66 0.61 20.51 16 18 N -0.83 -25.40 8.71 -173.53 -1.51 -26.91 16 19 O -0.58 -26.36 14.61 15.96 0.23 -26.13 16 20 O -0.37 -15.46 10.08 -129.98 -1.31 -16.77 16 21 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 22 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 23 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 24 H 0.06 2.64 7.96 -2.39 -0.02 2.62 16 25 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.26 13.30 8.31 -92.71 -0.77 12.52 16 27 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.09 4.35 5.29 -2.39 -0.01 4.34 16 29 H 0.41 11.02 8.12 -92.71 -0.75 10.27 16 30 H 0.40 10.90 8.93 -92.71 -0.83 10.07 16 Total: -1.00 -65.57 247.36 0.97 -64.60 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: -0.41 Total: 23.50 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: 3.67 Total: 19.68 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -3.23 Total: -109.63 kcal Atomic # 8 Polarization: -41.82 SS G_CDS: -1.08 Total: -42.90 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -65.57 0.97 -64.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306327473.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.888 kcal (2) G-P(sol) polarization free energy of solvation -65.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds